• Title/Summary/Keyword: knowledge mapping

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Non-Invasive in vivo Loss Tangent Imaging: Thermal Sensitivity Estimation at the Larmor Frequency

  • Choi, Narae;Kim, Min-Oh;Shin, Jaewook;Lee, Joonsung;Kim, Dong-Hyun
    • Investigative Magnetic Resonance Imaging
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    • v.20 no.1
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    • pp.36-43
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    • 2016
  • Visualization of the tissue loss tangent property can provide distinct contrast and offer new information related to tissue electrical properties. A method for non-invasive imaging of the electrical loss tangent of tissue using magnetic resonance imaging (MRI) was demonstrated, and the effect of loss tangent was observed through simulations assuming a hyperthermia procedure. For measurement of tissue loss tangent, radiofrequency field maps ($B_1{^+}$ complex map) were acquired using a double-angle actual flip angle imaging MRI sequence. The conductivity and permittivity were estimated from the complex valued $B_1{^+}$ map using Helmholtz equations. Phantom and ex-vivo experiments were then performed. Electromagnetic simulations of hyperthermia were carried out for observation of temperature elevation with respect to loss tangent. Non-invasive imaging of tissue loss tangent via complex valued $B_1{^+}$ mapping using MRI was successfully conducted. Simulation results indicated that loss tangent is a dominant factor in temperature elevation in the high frequency range during hyperthermia. Knowledge of the tissue loss tangent value can be a useful marker for thermotherapy applications.

Application of genomics into rice breeding

  • Ando, Ikuo
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.13-13
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    • 2017
  • By the progress of genome sequencing, infrastructures for marker-assisted breeding (MAB) of rice came to be established. Fine mapping and gene isolation have been conducted using the breeding materials derived from natural variations and artificial mutants. Such genetic analysis by the genome-wide dense markers provided us the knowledge about the many genes controlling important traits. We identified several genes or quantitative trait loci (QTL) for heading date, blast resistance, eating quality, high-temperature stress tolerance, and so on. NILs of each gene controlling heading date contribute to elongate the rice harvest period. Determination of precise gene location of blast resistance gene pi21, allowed us to overcome linkage drag, co-introduction of undesirable eating quality. We could also breed the first practical rice cultivar in Japan with a brown planthopper resistance gene bph11 in the genetic back-ground of an elite cultivar. Discovery of major and minor QTLs for good eating quality allowed us to fine-tune of eating quality according to the rice planting area or usage of rice grain. Many rice cultivars have bred efficiently by MAB for several traits, or by marker-assisted backcross breeding through chromosome segment substitution lines (CSSLs) using genetically diverse accessions. We are also systematically supporting the crop breeding of other sectors by MAB or by providing resources such as CSSLs. It is possible to pyramid many genes for important traits by using MAB, but is still difficult to improve the yielding ability. We are performing a Genomic Selection (GS) for improvement of rice biomass and grain yield. We are also trying to apply the genome editing technology for high yield rice breeding.

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A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages

  • Park, Seung-Jin;Kim, Jong-Hwan;Yoon, Byung-Ha;Kim, Seon-Young
    • Genomics & Informatics
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    • v.15 no.1
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    • pp.11-18
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    • 2017
  • Nowadays, huge volumes of chromatin immunoprecipitation-sequencing (ChIP-Seq) data are generated to increase the knowledge on DNA-protein interactions in the cell, and accordingly, many tools have been developed for ChIP-Seq analysis. Here, we provide an example of a streamlined workflow for ChIP-Seq data analysis composed of only four packages in Bioconductor: dada2, QuasR, mosaics, and ChIPseeker. 'dada2' performs trimming of the high-throughput sequencing data. 'QuasR' and 'mosaics' perform quality control and mapping of the input reads to the reference genome and peak calling, respectively. Finally, 'ChIPseeker' performs annotation and visualization of the called peaks. This workflow runs well independently of operating systems (e.g., Windows, Mac, or Linux) and processes the input fastq files into various results in one run. R code is available at github: https://github.com/ddhb/Workflow_of_Chipseq.git.

OWL Authoring System for building Web Ontology (웹 온톨로지 구축을 위한 OWL 저작 시스템)

  • Lee Moohun;Cho Hyunkyu;Cho Hyeonsung;Cho Sunghoon;Jang Changbok;Choi Euiin
    • The Journal of Society for e-Business Studies
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    • v.10 no.3
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    • pp.21-36
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    • 2005
  • Current web search includes a lot of different results with information that user does not want, because it searches information using keyword mapping. Ontology can describe the correct meaning of web resource and relationships between web resources. And we can extract suitable information that user wants using Ontology Accordingly, we need the ontology to represent knowledge. W3C announced OWL(Web Ontology Language), meaning description technology for such web resource. However, the development of a special tool that can effectively compose and edit OWL is inactive. In this paper, we designed and developed an OWL authoring system that can effectively provide the generation and edit about OWL.

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Constrained Independent Component Analysis Based Extraction and Mapping of the Brain Alpha Activity in EEG

  • Ahn, S.H.;Rasheed, T.;Lee, W.H.;Kim, T.S.;Cho, M.H.;Lee, S.Y..
    • Journal of Biomedical Engineering Research
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    • v.29 no.5
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    • pp.355-363
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    • 2008
  • In order to extract only the alpha activity related signals from EEG recordings, we have applied Constrained Independent Component Analysis (cICA), a new extension of ICA in which some a priori knowledge of the alpha activity is utilized to extract only desired components. Its extraction (or filtering) performance has been compared to that of the conventional band-pass filtering via the scalp alpha power maps and cortical source maps of the alpha activity. Our results demonstrate that the alpha power maps and cortical source maps from the cICA-extracted alpha signals reveal more focalized alpha generating regions of the brain than those from the band-pass filtered alpha EEG signals. Furthermore they match more closely the activated regions of the brain mapped using fMRI, validating our results. We believe that the cICA-based filtering approach of EEG signals is a more effective means of extracting a specific brain activity reflected in EEG signals that will result in more accurate source localization or imaging maps.

Analytic Study of Acquiring KANSEI Information Regarding the Recognition of Shape Models

  • Wang, Shao-Chi;Hiroshi Kubo;Hiromitsu Kikita;Takashi Uozumi;Tohru Ifukube
    • Proceedings of the Korean Society for Emotion and Sensibility Conference
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    • 2002.05a
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    • pp.266-269
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    • 2002
  • This paper explores a fundamental study of acquiring the users' KANSEI information regarding the recognition of shape models. Since there are many differences such as background differences and knowledge differences among users, they will produce different evaluations based on their KANSEI even when an identical shape model is presented. Cluster analysis is proved to be available for catching a group tendency and for constructing a mapping relation between a description of the shape model and the HANSEl database. In order to investigate an analogical relation and a mutual influence in our consciousness, first, we made a questionnaire that asked subjects to represent images having different colors and shape cones by using 4 pairs of adjectives (KANSEI words). Next, based on the cluster analysis of the questionnaire using a fuzzy set theory, we proposed a hypothesis showing how the analogical relation and the mutual influence work in our mind while viewing the shape models. Furthermore, how the properties of KANSEI depend on their descriptions was also investigated by virtue of the cluster analysis. This work will be valuable to construct a personal KANSEI database regarding the Shape Model Processing System.

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The Position Control of Excavator's Attachment using Multi-layer Neural Network (다층 신경 회로망을 이용한 굴삭기의 위치 제어)

  • Seo, Sam-Joon;Kwon, Dai-Ik;Seo, Ho-Joon;Park, Gwi-Tae;Kim, Dong-Sik
    • Proceedings of the KIEE Conference
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    • 1995.07b
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    • pp.705-709
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    • 1995
  • The objective of this study is to design a multi-layer neural network which controls the position of excavator's attachment. In this paper, a dynamic controller has been developed based on an error back-propagation(BP) neural network. Since the neural network can model an arbitrary nonlinear mapping, it was used as a commanded feedforward input generator. A PD feedback controller is used in parallel with the feedforward neural network to train the system. The neural network was trained by the current state of the excavator as well as the PD feedback error. By using the BP network as a feedforward controller, no a priori knowledge on system dynamics is need. Computer simulation results demonstrate such powerful characteristics of the proposed controller as adaptation to changing environment, robustness to disturbancen and performance improvement with the on-line learning in the position control of excavator attachment.

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QUANTIFYING DARK GAS

  • LI, DI;XU, DUO;HEILES, CARL;PAN, ZHICHEN;TANG, NINGYU
    • Publications of The Korean Astronomical Society
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    • v.30 no.2
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    • pp.75-78
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    • 2015
  • A growing body of evidence has been supporting the existence of so-called "dark molecular gas" (DMG), which is invisible in the most common tracer of molecular gas, i.e., CO rotational emission. DMG is believed to be the main gas component of the intermediate extinction region from Av~0.05-2, roughly corresponding to the self-shielding threshold of $H_2$ and $^{13}CO$. To quantify DMG relative to $H{\small{I}}$ and CO, we are pursuing three observational techniques; $H{\small{I}}$ self-absorption, OH absorption, and THz $C^+$ emission. In this paper, we focus on preliminary results from a CO and OH absorption survey of DMG candidates. Our analysis shows that the OH excitation temperature is close to that of the Galactic continuum background and that OH is a good DMG tracer co-existing with molecular hydrogen in regions without CO. Through systematic "absorption mapping" by the Square Kilometer Array (SKA) and ALMA, we will have unprecedented, comprehensive knowledge of the ISM components including DMG in terms of their temperature and density, which will impact our understanding of galaxy evolution and star formation profoundly.

The Development of Information Science in Ibero-America

  • Araujo, Carlos Alberto Avila
    • Journal of Information Science Theory and Practice
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    • v.7 no.4
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    • pp.6-19
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    • 2019
  • The purpose of this article is to problematize the existence of a possible Ibero-American informational thinking. It was initially observed that a relative absence of Ibero-America in the international presentations and mappings of information science exists. Below, the reality of the 22 countries that compose Ibero-America is discussed, a region that can be understood from a sociocultural and geopolitical perspective. Then, a mapping of the information science research in these countries is made. The main research topics found are: epistemological studies, relationships with library science, information literacy, representation and organization, bibliometric studies, information management, user studies, technological dimensions, and relationships with archival science and museum studies. Finally, a general epistemological configuration of information science is presented at a global level, highlighting the great trends of study of information that marked the decades of the 1960s and 1970s (physical model), 1980s and 1990s (cognitive model), and the 21st century (sociocultural model), and which manifested themselves in the different subareas that make up the field. The most recent research in information science, in addition to addressing information transfer (physical dimension) and its relationship with data and knowledge (cognitive dimension), has also incorporated aspects related to the social effects of information, its role in the constitution of identities and culture, and the importance of its material conformations. Such expansion reflects attempts to address the complexity of informational phenomena. Therefore, it is concluded that it is important to place the specific contributions of Ibero-America in this context.

Active Noise Control by ANFIS for Unpredictable Secondary Path (불예측적 이차경로에 대한 ANFIS를 이용한 능동소음제어)

  • Kim, Eung-Ju;Choi, Won-Seock;Kim, Beom-Soo;Lim, Myo-Taeg
    • Proceedings of the KIEE Conference
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    • 2001.07d
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    • pp.1964-1966
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    • 2001
  • Active Noise control(ANC) is rapidly becoming the most effective way to reduce noises that can otherwise be very difficult and expensive to control. This research presents ANFIS (Adaptive Network Fuzzy Inference System) controller for adaptively noise cancelling in a duct. ANC system generates secondary control sound pressure with same amplitude and with opposite phase as noise to be eliminated. ANFIS controller is trained to optimize its parameters for adaptively cancelling noise. That is ANFIS train its parameters by gradient descent and LSE method so called hybrid method. This paper present ANFIS in active noise control which provides an improvement convergence speed and limitation of linearity condition. It can model nonlinear functions of arbitrary complexity and ANFIS can construct an input-ouput mapping based on both human knowledge in the form of Takagi and Sugeno's fuzzy if-then rules and stipulated input-output data pairs. This paper also shows that the proposed ANFIS active noise control system successfully cancelled noise.

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