• 한국문헌정보학회지
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• 제54권2호
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• pp.197-223
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• 2020

이 연구에서는 지적구조 분석기법인 저자프로파일링 기법과 저자동시인용 분석기법의 장점을 결합한 새로운 방안으로 인용가중 저자프로파일링(citation-weighted author profiling) 기법을 개발하였다. 기존의 저자프로파일링 기법에서는 저자가 주로 연구한 주제를 반영하는 단어를 분석하지만, 인용을 고려한 저자프로파일링 기법에서는 인용이 많이 된 논문에 출현한 단어를 분석함으로써 저자가 주로 영향을 끼친 주제를 파악하는데 도움이 된다. 이를 통해 기존 저자 프로파일링 기법의 장점인 세부적인 주제 파악이 가능함과 동시에 저자동시인용 분석 기법과 같이 저자의 영향력을 측정할 수 있다. 제안한 인용가중 저자프로파일링 기법을 국내 학교도서관 연구의 지적구조를 분석하는데 적용해본 결과, 각 저자의 인용 영향력이 높은 주요 주제를 세부적으로 파악할 수 있었고 시기별 영향력의 변화도 명확하게 드러났다. 인용가중 저자프로파일링 기법은 저자가 얼마나 많은 논문을 발표했는가라는 연구 생산성 관점이 아니라, 어떤 주제에 관해서 얼마나 많이 인용되었는가라는 연구 영향력 관점에서 세부 주제를 파악할 수 있는 기법으로 활용될 것으로 기대된다.

• Applied Microscopy
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• 제42권3호
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• pp.158-163
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• 2012

Detailed comparison of low-voltage scanning electron microscopy and electron holography techniques for two-dimensional (2D) dopant profiling was carried out with using the same multilayered p-n junction specimen. The dopant profiles obtained from two methods are in good agreement with each other. It demonstrates that reliability of dopant profile measurement can be increased through precise comparison of 2D profiles obtained from various microscopic techniques.

• BMB Reports
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• 제45권7호
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• pp.377-389
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• 2012

Food fermentations have enhanced human health since the dawn of time and remain a prevalent means of food processing and preservation. Due to their cultural and nutritional importance, many of these foods have been studied in detail using molecular tools, leading to enhancements in quality and safety. Furthermore, recent advances in high-throughput sequencing technology are revolutionizing the study of food microbial ecology, deepening insight into complex fermentation systems. This review provides insight into novel applications of select molecular techniques, particularly next-generation sequencing technology, for analysis of microbial communities in fermented foods. We present a guideline for integrated molecular analysis of food microbial ecology and a starting point for implementing next-generation analysis of food systems.

• 원예과학기술지
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• 제28권6호
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• pp.1039-1050
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• 2010

당근은 서양뿐만 아니라 중국 및 한국과 같은 아시아 전역에서 요리로 많이 이용되는 유용한 작물 중 하나이다. 그러나 당근 종자 표면에는 모(毛)가 존재하고 이 종모는 발아율을 증가시키기 위해 제거해야 한다. 더욱이 종모 처리는 시간과 인력 및 자본의 소비와 같은 추가적인 손실을 동반하였다. 이러한 문제점을 방지하기 위해 단모종자를 이용하여 모형성과 관련된 유전자의 연구가 필요하다. 당근 종모의 발달은 2차 세포벽의 합성단계 동안 cellulose의 합성 과정과 연관되어 있음을 바탕으로, EST profiling을 통해 종모와 관련된 유전자를 탐색하고자 하였다. 당근 종모 형성에 관련된 유전자 발현을 조사하기 위해, 성숙 초기 단계의 단모종자 659-1개체와 유모종자 677-14개체를 이용하여 cDNA library를 구축하였다. 단모종자 659-1개체와 유모종자 677-14개체에서 확보된 EST 염기서열의 NCBI database BLASTX 분석을 통한 EST profiling 결과, 172개와 224개의 unigene은 이미 알려진 단백질 염기서열과 상동성을 보였으며 나머지 233개와 192개의 unigene은 확인되지 않는 유전자들이었다. EST는 추정되는 기능에 따라 16개의 category로 그룹화되었다. 전체 EST 중 29개의 unigene이 2차 세포벽 합성 단계 동안 cellulose의 합성 pathway상의 종모 형성을 조절하는 유전자로 추정되며, 실제로 종모 발달과 관련된 14개의 unigene이 유모종자 계통에서만 발견되었다.

• Journal of Ginseng Research
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• 제38권4호
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• pp.278-288
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• 2014

Background: Panax ginseng Meyer is a traditional medicinal plant famous for its strong therapeutic effects and serves as an important herbal medicine. To understand and manipulate genes involved in secondary metabolic pathways including ginsenosides, transcriptome profiling of P. ginseng is essential. Methods: RNA-seq analysis of adventitious roots of two P. ginseng cultivars, Chunpoong (CP) and Cheongsun (CS), was performed using the Illumina HiSeq platform. After transcripts were assembled, expression profiling was performed. Results: Assemblies were generated from ~85 million and ~77 million high-quality reads from CP and CS cultivars, respectively. A total of 35,527 and 27,716 transcripts were obtained from the CP and CS assemblies, respectively. Annotation of the transcriptomes showed that approximately 90% of the transcripts had significant matches in public databases.We identified several candidate genes involved in ginsenoside biosynthesis. In addition, a large number of transcripts (17%) with different gene ontology designations were uniquely detected in adventitious roots compared to normal ginseng roots. Conclusion: This study will provide a comprehensive insight into the transcriptome of ginseng adventitious roots, and a way for successful transcriptome analysis and profiling of resource plants with less genomic information. The transcriptome profiling data generated in this study are available in our newly created adventitious root transcriptome database (http://im-crop.snu.ac.kr/transdb/index.php) for public use.

• 한국자기공명학회논문지
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• 제17권1호
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• pp.1-10
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• 2013

Metabolomics is the study which detects the changes of metabolites level. Metabolomics is a terminal view of the biological system. The end products of the metabolism, metabolites, reflect the responses to external environment. Therefore metabolomics gives the additional information about understanding the metabolic pathways. These metabolites can be used as biomarkers that indicate the disease or external stresses such as exposure to toxicant. Many kinds of biological samples are used in metabolomics, for example, cell, tissue, and bio fluids. NMR spectroscopy is one of the tools of metabolomics. NMR data are analyzed by multivariate statistical analysis and target profiling technique. Recently, NMR-based metabolomics is a growing field in various studies such as disease diagnosis, forensic science, and toxicity assessment.

• Journal of Microbiology and Biotechnology
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• 제25권2호
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• pp.217-226
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• 2015

Metabolite profiles of seven commercial vinegars and two traditional vinegars were performed by gas chromatography time-of-flight mass spectrometry with multivariate statistical analysis. During alcohol fermentation, yeast, nuruk, and koji were used as sugars for nutrients and as fermentation substrates. Commercial and traditional vinegars were significantly separated in the principal component analysis and orthogonal partial least square discriminant analysis. Six sugars and sugar alcohols, three organic acids, and two other components were selected as different metabolites. Target analysis by ultra-performance liquid chromatography quadruple-time-of-flight mass spectrometry and liquid chromatography-ion trap-mass spectrometry/mass spectrometry were used to detect several metabolites having antioxidant activity, such as cyanidin-3-xylosylrutinoside, cyanidin-3-rutinoside, and quercetin, which were mainly detected in Rural Korean Black raspberry vinegar (RKB). These metabolites contributed to the highest antioxidant activity measured in RKB among the nine vinegars. This study revealed that MS-based metabolite profiling was useful in helping to understand the metabolite differences between commercial and traditional vinegars and to evaluate the association between active compounds of vinegar and antioxidant activity.

• Journal of Microbiology and Biotechnology
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• 제23권2호
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• pp.177-183
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• 2013

Bacterial blight, an important and potentially destructive bacterial disease in rice caused by Xanthomonas oryzae pv. oryzae (Xoo), has recently developed resistance to the available antibiotics. In this study, mass spectrometry (MS)-based metabolite profiling and multivariate analysis were employed to investigate the correlation between timedependent metabolite changes and antimicrobial activities against Xoo over the course of Phomopsis longicolla S1B4 fermentation. Metabolites were clearly differentiated based on fermentation time into phase 1 (days 4-8) and phase 2 (days 10-20) in the principal component analysis (PCA) plot. The multivariate statistical analysis showed that the metabolites contributing significantly for phases 1 and 2 were deacetylphomoxanthone B, monodeacetylphomoxanthone B, fusaristatin A, and dicerandrols A, B, and C as identified by liquid chromatography-mass spectrometry (LC-MS), and dimethylglycine, isobutyric acid, pyruvic acid, ribofuranose, galactofuranose, fructose, arabinose, hexitol, myristic acid, and propylstearic acid were identified by gas chromatography-mass spectrometry (GC-MS)-based metabolite profiling. The most significantly different secondary metabolites, especially deacetylphomoxanthone B, monodeacetylphomoxanthone B, and dicerandrol A, B and C, were positively correlated with antibacterial activity against Xoo during fermentation.

• 인터넷정보학회논문지
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• 제21권2호
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• pp.91-97
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• 2020

최근 국방, 안보, 외교 분야 관련자를 대상으로 하는 피싱 공격이 급증하고 있다. 특히 해킹 공격조직 Kimsuky는 2013년 이후 피싱 공격을 통해 공공기관의 주요 정보 수집을 위한 활동을 하고 있다. 본 논문에서는 피싱 메일 공격조직에 대한 프로파일링 분석을 수행하였다. 이를 위해 피싱 메일 공격의 유형을 분류하고 해킹 공격조직의 공격방식에 대한 분석을 하였다. 상세한 프로파일링 분석을 통해 공격조직의 목적을 추정하고 대응방안을 제시하였다.

• Journal of Microbiology and Biotechnology
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• 제19권1호
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• pp.51-54
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• 2009

Myxobacteria, Gram-negative soil bacteria, are a well-known producer of bioactive secondary metabolites. Therefore, this study presents a methodological approach for the high-throughput screening of secondary metabolites from 4 wild-type Myxococcus xanthus strains. First, electrospray ionization mass spectrometry (ESI-MS) was performed using extracellular crude extracts. As a result, 22 metabolite peaks were detected, and the metabolite profiling was then conducted using the m/z value, retention time, and MS/MS fragmentation pattern analyses. Among the peaks, one unknown compound peak was identified as analogous to the myxalamid A, B, and C series. An analysis of the tandem mass spectrometric fragmentation patterns and HR-MS identified myxalamid K as a new compound derived from M. xanthus. In conclusion, LC-MS/MS-based chemical screening of diverse secondary metabolites would appear to be an effective approach for discovering unknown microbial secondary metabolites.