Analysis of Seed Hair Formation Related Genes by EST Profiling in Carrot (Daucus carota var. sativa)
![]() ![]() ![]() |
Hwang, Eun-Mi
(Department of Horticultural Biotechnology, Kyung Hee University)
Oh, Gyu-Dong (Department of Horticultural Biotechnology, Kyung Hee University) Shim, Eun-Jo (Department of Horticultural Biotechnology, Kyung Hee University) Jeon, Sang-Jin (Breeding Research Institute, Carrotop Seed Co.) Park, Young-Doo (Department of Horticultural Biotechnology, Kyung Hee University) |
1 | Arioli, T., L. Peng, A.S. Betzner, J. Burn, W. Wittke, W. Herth, C. Camilleri, H. Hofte, J. Plazinski, R. Birch, A. Cork, J. Glover, J. Redmond, and R.E. Williamson. 1998. Molecular analysis of cellulose biosynthesis in Arabidopsis. Science 279:717-720. DOI |
2 | Arpat, A.B., M. Waugh, J.P. Sullivan, M. Gonzales, D. Frisch, D. Main, T. Wood, A. Leslie, R.A. Wing, and T.A. Wilkins. 2004. Functional genomics of cell elongation in developing cotton fibers. Plant Mol. Biol. 54:911-929. DOI ScienceOn |
3 | Basra, A.S. and C.P. Malik. 1984. Development of the cotton fiber. Int. Rev. Cytol. 89:65-113. DOI |
4 | Zrenner, R., M. Salanoubat, L. Willimitzer, and U. Sonnewald. 1995. Evidence of the crucial role of sucrose synthase for sink strength using transgenic potato plants (Solanum tuberosum L.). Plant J. 7:97-107. DOI ScienceOn |
5 | Ruan, Y.L. and P.S. Chourey. 1998. A fiberless seed mutation in cotton is associated with lack of fiber cell initiation in ovule epidermis and alterations in sucrose synthase expression and carbon partitioning in developing seeds. Plant Physiol. 118: 399-406. DOI |
6 | Adams, M.D., A.R. Kerlavage, R.D. Fleischmann, R.A. Fuldner, C.J. Bult, N.H. Lee, E.F. Kirkness, K.G. Weinstock, J.D. Gocayne, O. White, G. Sutton, J.A. Blake, R.C. Brandon, M.W. Chiu, R.A. Clayton, R.T. Cline, M.D. Cotton, J.E. Hughes, L.D. Fine, L.M. Fitzgerald, W.M. FitzHugh, J.L. Fritchman, N.S.M. Geoghagen, A. Glodek, C.L. Gnehm, M.C. Hanna, E. Hedblom, P.S. Hinkle Jr., J.M. Kelley, K.M. Klimek, J.C. Kelley, L.I. Liu, S.M. Marmaros, J.M. Merrick, R.F. Moreno-Palanques, L.A. McDonald, D.T. Nguyen, S.M. Pellegrino, C.A. Phillips, S.E. Ryder, J.L. Scott, D.M. Saudek, R. Shirley, K.V. Small, T.A. Spriggs, T.R. Utterback, J.F. Weidman, Y. Li, R. Barthlow, D.P. Bednarik, L. Cao, M.A. Cepeda, T.A. Coleman, E.J. Collins, D. Dimke, P. Feng, A. Ferrie, C. Fischer, G.A. Hastings, W.W. He, J.S. Hu, K.A. Huddleston, J.M. Greene, J. Gruber, P. Hudson, A. Kim, D.L. Kozak, C. Kunsch, H.J. Ji, H.D. Li, P.S. Meissner, H. Olsen, L. Raymond, Y.F. Wei, J. Wing, C. Xu, G.L. Yu, S.M. Ruben, P.J. Dillon, M.R. Fannon, C.A. Rosen, W.A. Haseltine, C. Fields, C.M. Fraser, and J.C. Venter. 1995. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377:173-174. DOI ScienceOn |
7 | Uchimiya, H., S. Kiou, T. Shimazaki, S. Aotsuka, S. Takamatsu, R. Nishi, H. Hashimoto, Y. Matsubayashi, N. Kidou, M. Umeda, and A. Kato. 1992. Random sequencing of cDNA libraries reveals a variety of expressed genes in cultured cells of rice. Plant J. 2:1005-1009. DOI |
8 | Wanjie, S.W., R. Welti, R.A. Moreau, and K.D. Chapman. 2005. Identification and quantification of glycerolipids in cotton fibers: reconciliation with metabolic pathway predictions from DNA databases. Lipids 40:773-785. DOI ScienceOn |
9 | Yves, A.G., S. Bourot, T. Arioli, E.S. Dennis, and J.L. Danny. 2009. Transcript profiling during fiber development identifies pathways in secondary metabolism and cell wall structure that may contribute to cotton fiber quality. Plant Cell Physiol. 50:1364-1381. DOI ScienceOn |
10 | Zhang, L., X.L. Ma, Q. Zhang, C.L. Ma, P.P. Wang, Y.F. Sun, Y.X. Zhao, and H. Zhang. 2001. Expressed sequence tags from a NaCl-treated Suaeda salsa cDNA library. Gene 267:193-200. DOI ScienceOn |
11 | Ruan, Y.L., P.S. Chourey, D.P. Delmer, and L. Perez-Grau. 1997. The differential expression of sucrose synthase in relation to diverse patterns of carbon partitioning in developing cotton seed. Plant Physiol. 115:375-385. |
12 | Somerville, C. 2006. Cellulose synthesis in higher plants. Ann.Rev. Cell Dev. Biol. 22:53-78. DOI ScienceOn |
13 | Ronning, C.M., S.S. Stegalkina, R.A. Ascenzi, O. Bougri, A.L. Hart, T.R. Utterbach, S.E. Vanaken, S.B. Riedmuller, J.A. White, J. Cho, G.M. Pertea, Y. Lee, S. Karamycheva, R. Sultana, J. Tsai, J. Quackenbush, H.M. Griffiths, S. Restrepo, C.D. Smart, W.E. Fry, R. Van Der Hoeven, S. Tanksley, P. Zhang, H. Jin, M.L. Yamamoto, B.J. Baker, and C.R. Buell. 2003. Comparative analyses of potato expressed sequence tag libraries. Plant Physiol. 131:419-429. DOI ScienceOn |
14 | Park, Y., M.S. Cho, Y.S. Kim, and S.G. Park. 2002. A promising carrot mutant, spineless seeds. J. Kor. Soc. Hort. Sci. 43: 707-709. |
15 | Pavy, N., C. Paule, L. Parsons, J.A. Crow, M.J. Morency, J. Cooke, J.E. Johnson, E. Noumen, C. Guillet-Claude, Y. Butterfield, S. Barber, G. Yang, J. Liu, J. Stott, R. Kirkpatrick, A. Siddiqui, R. Holt, M. Marra, A. Seguin, E. Retzel, J. Bousquet, and J. MacKay. 2005. Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters. BMC Genomics 6:144. DOI |
16 | Pear, J.R., Y. Kawagoe, W.E. Schreckengost, D.P. Delmer, and D.M. Stalker. 1996. Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. Proc. Natl. Acad. Sci. USA. 93:12637-12642. DOI ScienceOn |
17 | Nolte, K.D., D.L. Hendrix, J.W. Radin, and K.E. Koch. 1995. Sucrose synthase localization during initiation of seed development and trichome differentiation in cotton ovules. Plant Physiol. 109:1285-1293. |
18 | Gou, J.Y., L.J. Wang, S.P. Chen, W.L. Hu, and X.Y. Chen. 2007. Gene expression and metabolite profiles of cotton fiber during cell elongation and secondary cell wall synthesis. Cell Res. 17:422-434. |
19 | Lee, P.S. and K.H. Lee. 2000. Genomic analysis. Curr. Opin. Biotechnol. 11:171-175. DOI ScienceOn |
20 | Menon, A.R.S. and Y. Dave. 1989. Micromorphology of hairs and spines on ovary and fruit of Daucus carota L. var. sativa (The cultivated carrot). Bot. Mat. Tokyo 102:503-509. DOI |
21 | Applequist, W.L., R. Cronn, and J.F. Wendel. 2001. Comparative development of fiber in wild and cultivated cotton. Evol. Dev. 3:3-17. DOI ScienceOn |
22 | Ogihara, Y., K. Mochida, Y. Nemoto, K. Murai, Y. Yamazaki, I.T. Shin, and Y. Kohara. 2003. Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J. 33:1001-1011. DOI ScienceOn |
23 | Chourey, P.S. and O.E. Nelson. 1976. The enzymatic deficiency conditioned by the shrunken 1 mutation in maize. Biochem. Genet. 14:1041-1055. DOI ScienceOn |
24 | Ewing, R.M., A.B. Kahla, O. Poirot, F. Lopez, S. Audic, and J.M. Claverie. 1999. Large-scale statistics analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 9:950-959. DOI ScienceOn |
25 | Betancur, L., B. Singh, R.A. Rapp, J.F. Wendel, M.D. Marks, A.W. Roberts, and C.H. Haigler. 2010. Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. J. Integr. Plant Biol. 52:205-220. DOI ScienceOn |
26 | Boguski, M.S. and G.D. Schuler. 1995. EST ablishing a human transcript map. Nat. Genet. 10:369-371. DOI ScienceOn |
27 | Brett, C.T. and K.W. Waldron. 1996. Physiology and Biochemistry of Plant Cell Walls, 2nd ed. Chapman and Hall. London. |
28 | Brown, D.M., L.A. Zeef, J. Ellis, R. Goodacre, and S.R. Turner. 2005. Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17:2281-2295. DOI ScienceOn |
29 | Amor, Y., C.H. Haigler, S. Johnson, M. Wainscott, and D.P. Delmer. 1995. A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants. Proc. Natl. Acad. Sci. USA. 92:9353-9357. DOI ScienceOn |
![]() |