• Title/Summary/Keyword: identification of trees

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Mitochondrial Genome Sequence of Echinostoma revolutum from Red-Crowned Crane (Grus japonensis)

  • Ran, Rongkun;Zhao, Qi;Abuzeid, Asmaa M.I.;Huang, Yue;Liu, Yunqiu;Sun, Yongxiang;He, Long;Li, Xiu;Liu, Jumei;Li, Guoqing
    • Parasites, Hosts and Diseases
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    • v.58 no.1
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    • pp.73-79
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    • 2020
  • Echinostoma revolutum is a zoonotic food-borne intestinal trematode that can cause intestinal bleeding, enteritis, and diarrhea in human and birds. To identify a suspected E. revolutum trematode from a red-crowned crane (Grus japonensis) and to reveal the genetic characteristics of its mitochondrial (mt) genome, the internal transcribed spacer (ITS) and complete mt genome sequence of this trematode were amplified. The results identified the trematode as E. revolutum. Its entire mt genome sequence was 15,714 bp in length, including 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and one non-coding region (NCR), with 61.73% A+T base content and a significant AT preference. The length of the 22 tRNA genes ranged from 59 bp to 70 bp, and their secondary structure showed the typical cloverleaf and D-loop structure. The length of the large subunit of rRNA (rrnL) and the small subunit of rRNA (rrnS) gene was 1,011 bp and 742 bp, respectively. Phylogenetic trees showed that E. revolutum and E. miyagawai clustered together, belonging to Echinostomatidae with Hypoderaeum conoideum. This study may enrich the mitochondrial gene database of Echinostoma trematodes and provide valuable data for studying the molecular identification and phylogeny of some digenean trematodes.

Identification of Influencing Factors of Forest Scenic Beauty for Outdoor Recreation (야외휴양(野外休養)을 위한 산림풍치(山林風致)의 영향인자(影響因子) 구명(究明))

  • Song, Hyung Sop;Kim, Seong Il;Cho, Eung Hyouk
    • Journal of Korean Society of Forest Science
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    • v.81 no.3
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    • pp.287-298
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    • 1992
  • The main purpose of this study is to obtain information on the factors influencing forest scenic beauty in order to make and manage scenic forest of recreation areas. 62 slides were taken for the study. Each photograph was independently judged by college students in 10 different major fields, with a total 264 observers after reliability test in the study. The ratings were scaled using a computer program developed by Brown & Daniel(1990). The results of rating scale analysis indicate that respondents' major field difference affects visual preference for forest scenic beauty. Similarly, with different sexual, forest visit frequency, and community type in childhood, people tend to rate their preference differently. The respondents' rating scale of relative scenic beauty of near-view forest scenes can largely be explained in terms of forest physical characteristics of forest landscape. Bare ground area and stash area are represented negative esthetic effects, while DBH, number of trees per hectare, sky area showed positive esthetic effects. These 6 variables in the model can be accounted for 74% of total variance in perceived forest scenic beauty. With this study result, it can be concluded that forest physical characteristics are significantly related to visual preference for near-view forest scenes.

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Study on Location Characteristics and Establishment Time of Cherry-blossom Attractions in the Modern Era Busan (근대 부산에서 벚꽃 명소의 입지적 특성과 성립 시기에 관한 연구)

  • Kang, YoungJo
    • Journal of the Korean Institute of Landscape Architecture
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    • v.44 no.5
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    • pp.47-58
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    • 2016
  • In modern era Busan, newspaper articles about cherry blossom attractions from FuzanNippo and ChosenJiho have changed from places of landmark cherry trees to recreational activities under the cherry blossom. This means that the place characteristics of the cherry blossom attractions helped transform modern Busan. This study is to clarify the real image of the cherry blossom attractions where they were and when it was established in modern Busan. In order to discuss the location characteristics and the timing of identification as it changed from cherry-blossom viewing spots to picnic spots under the cherry blossom, current articles published in the FuzanNippo and ChosenJiho were collected. This study results are as follows: First of all, cherry blossom attractions are located in private gardens, gardens at hot spring inns, public lands such as schools, temples, reservoirs and malls such as Dongnae hot spring and the Midoricho red-light district. The location feature was that they were found at the edges of settlement environments, at the interface of city and natural spaces in modern Busan. Secondly, newspaper articles about cherry blossom attractions gradually changed from cherry blossom viewing spots to picnic spots under the cherry blossom, which became the peak of the cherry blossom attractions in modern Busan. The main focus of cherry blossom attractions changed from cherry-blossom viewing to picnicking under cherry blossoms around 1920. This means that the establishment of cherry blossom attractions can be seen around 1920. Articles of cherry-blossom viewing picked up sites not easy to access such as private gardens and reservoirs, articles about picnic spots under cherry blossoms noted public places that everyone could access. Cherry blossom attractions sites became spring resorts in modern Busan.

Identification and Ecological Characteristics of Bacterial Blossom Blight Pathogen of Kiwifruit (참다래 꽃썩음병균의 동정 및 발생생태)

  • Shin, Jong-Sup;Park, Jong-Kyu;Kim, Gyoung-Hee;Park, Jae-Young;Han, Hyo-Shim;Jung, Jae-Sung;Hur, Jae-Seoun;Koh, Young-Jin
    • Research in Plant Disease
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    • v.10 no.4
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    • pp.290-296
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    • 2004
  • Bacterial blossom blight is one of the most important diseases of kiwifruit (Actinidia deliciosa). The disease occurs during flowering in the late May and disease outbreaks associated with rainfall during the flowering season have resulted in a severe reduction in kiwifruit production. The causal organism isolated from diseased blossoms of kiwifruits was identified as Pseudomonas syringae pv, syringae based on the physiological and biochemical characteristics and pathogenicity test. Dead fruit stalks, dead pruned twigs, fallen leaves and soils mainly provided R syringae pv. syringae with overwintering places in the kiwifruit orchards, and the inocula also overwintered on buds, trunks, branches, and twigs on the kiwifruit trees. Among the overwintering places, the incula were detected in the highest frequencies from dead fruit stalks. The population density of P. syringae pv. syringae was speculated to be over $1{\times}10^4$cfu/ml for the bacterial infection, and the optimum temperature for the bacterial growth ranged 20 to $25^{\circ}C$. The highest population density of P. syringae pv. syringae on the overwintering places was detected in May and June when the daily average temperature coincided with the optimum temperature for bacterial growth of P. syringae pv. syringae.

Identification of ecological characteristics of Deciduous broad-leaved forest, Garasan(Mt.)·Nojasan(Mt.) at GeoJae (거제도 가라산·노자산 일대 낙엽활엽수림의 생태적 특성 규명)

  • Lee, Soo-Dong;Cho, Bong-Gyo;Lee, Gyounggyu;Yeum, Jung-Hun;Oh, Chung-Hyeon
    • Korean Journal of Environment and Ecology
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    • v.35 no.2
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    • pp.204-219
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    • 2021
  • This study was conducted to investigate and analyze the characteristics of the plant community structure of vegetation distributed on the western slope and ridge connecting Mt. Noja to Mt. Gara. This basic research was executed not only to restore and manage forest vegetation, but also to monitor the trend of change in the long term. As a result of classifying the communitise in 86 survey quadrats, the Pinus thunbergii-Platycarya strobilacea comm. and P. thunbergii-P. densiflora comm. were distributed around the lowlands. The Carpinus tschonoskii-Deciduous broad-leaved comm., Styrax japonicus-Deciduous broad-leaved comm., Acer pictum subsp. Mono-Deciduous broad-leaved comm., Deciduous broad-leaved comm., and Zelkova serrata comm. appeared in the valley and all stone areas. Quercus serrata comm., Q. serrata-S. japonicus comm., S. japonicus-Carpinus cordata comm., Euonymus oxyphyllus comm. were classified as being distributed on steep slopes with relatively high altitude. According to the succession trend of the forest, evergreen conifers will be transition to deciduous broad-leaved trees. However, deciduous broad-leaved arboreous forests, such as Carpinus tschonoskii, zelkova serrata, and Acer pictum subsp. Mono, were considered to maintain their current succession stage because not only the stratified structure was developed over about 50 years tree age, but also ecologically stabilized. As environmental factors, it was analyzed that altitude, pH, content of clay and silt, Mg++, Ca++, etc. directly or indirectly affect the distribution of plant communities.

Researches of pear tree (Pyrus spp.) genomics (배나무(Pyrus spp.) 유전체 연구 현황)

  • Oh, Youngjae;Shin, Hyunsuk;Kim, Keumsun;Han, Hyeondae;Kim, Yoon-Kyeong;Kim, Daeil
    • Journal of Plant Biotechnology
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    • v.42 no.4
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    • pp.290-297
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    • 2015
  • Based on the place of its origin, pear tree (Pyrus spp.) is largely divided into European pears (P. communis, cultivated mainly in Europe and the U.S.) and Asian pears (P. pyrifolia, P. bretschneideri, and P. ussuriensis, distributed and grown in East Asian countries including China, Japan, and Korea). Most pear trees have 17 chromosomes (diploidy, 2n=2x=34). Their genetic studies and precise cultivar breeding are highly restricted by conditions such as self-incompatibility controlled by S-locus and juvenility as one major character of fruit crops. Genetic studies on Pyrus have been promoted by the development of various molecular markers. These markers are being utilized actively in various genetic studies, including genetic relationship analysis, genetic mapping, and QTL analysis. In addition, research on pear genetic linkage maps has been extended to studies for the identification of QTL for target traits such as disease resistance and genetic loci of useful traits. NGS technology has radically reduced sequencing expenses based on massive parallel reactions to enable high-capacity and high-efficiency. NGS based genome analyses have been completed for Chinese pear 'Danshansuli' and European pear 'Bartlett'. In Korea, GWAS for agricultural valuable traits such as floral structure, ripening, and total soluble contents have been conducted through resequencing. GBS has been performed for 'Whangkeumbae', 'Cheongsilri', and 'Minibae'.

Plant Ecological Studies of Burned Field at the High Mountain Region - Especially at Cheisuk-bong (1,806m) Area in Mt. Chiri - (고산지대(高山地帶) 산화적지(山火跡地)의 식물생태(植物生態)에 관한 연구(硏究) - 지리산(智異山)의 제석봉(1,806m) 지역(地域)을 중심(中心)으로 -)

  • Park, Kwang-Woo;Chung, Song-Ho
    • Journal of Korean Society of Forest Science
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    • v.79 no.1
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    • pp.33-41
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    • 1990
  • The purpose of this study is to investigate the developmental process of plant community during the secondary succession through the analysis of floristic composition, life form etcectra in burned site, and the structure of forest stand before forest fire occurrence was estimated by the method of anatomical wood identification for dead trees in burned site, Cheisuk-bong in Mt. Chiri of Korea. Plant community before forest fire occurrence was estimated the high mountain conifer stand of the last successional stage to consist of Pinus koraiensis(75%), Abies koreana(15%) and Picea jezoensis(10%), and Betula costata was survived only one species after forest fire occurrence. The total number of plant species in the investigated area was 19 families and 23 species that was identified. The dominate species in burned site were Festuca ovina and Arrhenatherum elatius, Carex humilis, Ligularia fischeri etcectra in the investigated area flora. The life form of plant in burned site was the erect from 47.8%, the tufted from 30.4%, the branched and the prostrate from was both 8.7%, It was assumed that dominant species in the burned sites were Gramineae (Festuca ovina, Arrhenatherum elatius), Carex humilis ${\rightarrow}$Sorbus commixta, Rhododendron schrippenbachii, Sambucus williamsii var. coreana, Tripterygium regelii ${\rightarrow}$Acer pseudo-sieboldianum var. koreanum, Betula costata, Quercus mongolica${\rightarrow}$Pinaceae forest(Pinus koraiensis, Abies koreana, Picea jezoznsis).

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Identification of Key Metabolites Involved in Quantitative Growth of Pinus koraiensis trees (II) (잣나무 생장과 관련이 있는 주요 대사물질 인자(II))

  • Lee, Wi Young;Park, Eung-Jun;Kim, Hyun-Tae;Han, Sang Urk
    • Journal of Korean Society of Forest Science
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    • v.103 no.2
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    • pp.211-217
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    • 2014
  • A metabolomic study using GC/MS analysis was conducted to identify key metabolic components regulating the growth of open-pollinated Pinus koraiensis families, which were grown for 29 years at three different locations. Among 110 individual metabolites identified, the contents of 62 metabolites were higher in the superior than in the inferior families (p<0.05), together with 22 metabolites, such as phosphoric acid, alanine, glycine, malic acid, and sucrose, being accumulated 1.5-fold higher in the superior families. In addition, 15 metabolites including alanine, malic acid, sucrose, d-turanose, and succinic acid showed positive correlation with the growth (p<0.01). Furthermore, the metabolites, of which contents were correlated with the growth but not significantly changed at different locations, were acetic acid, succinic acid, butanoic acid, glutamic acid, and inositol. Therefore we suggest that several metabolites selected in this study may be used as metabolic markers for quantitative growth trait in P. koraiensis.

A Study on the Identification and Classification of Relation Between Biotechnology Terms Using Semantic Parse Tree Kernel (시맨틱 구문 트리 커널을 이용한 생명공학 분야 전문용어간 관계 식별 및 분류 연구)

  • Choi, Sung-Pil;Jeong, Chang-Hoo;Chun, Hong-Woo;Cho, Hyun-Yang
    • Journal of the Korean Society for Library and Information Science
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    • v.45 no.2
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    • pp.251-275
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    • 2011
  • In this paper, we propose a novel kernel called a semantic parse tree kernel that extends the parse tree kernel previously studied to extract protein-protein interactions(PPIs) and shown prominent results. Among the drawbacks of the existing parse tree kernel is that it could degenerate the overall performance of PPI extraction because the kernel function may produce lower kernel values of two sentences than the actual analogy between them due to the simple comparison mechanisms handling only the superficial aspects of the constituting words. The new kernel can compute the lexical semantic similarity as well as the syntactic analogy between two parse trees of target sentences. In order to calculate the lexical semantic similarity, it incorporates context-based word sense disambiguation producing synsets in WordNet as its outputs, which, in turn, can be transformed into more general ones. In experiments, we introduced two new parameters: tree kernel decay factors, and degrees of abstracting lexical concepts which can accelerate the optimization of PPI extraction performance in addition to the conventional SVM's regularization factor. Through these multi-strategic experiments, we confirmed the pivotal role of the newly applied parameters. Additionally, the experimental results showed that semantic parse tree kernel is superior to the conventional kernels especially in the PPI classification tasks.

Silence and Absence: Diaspora in Jang Ryul's Films (침묵과 부재: 장률 영화 속의 디아스포라)

  • Yook, Sang-Hyo
    • The Journal of the Korea Contents Association
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    • v.9 no.11
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    • pp.163-174
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    • 2009
  • The first Chinese film maker from Korean ethnicity, Jang Ryul is also the first Korean director from Chinese background. As a diaspora himself, he crosses over two countries, trying to look through diaspora viewpoint at diaspora phenomena widely scattered in Northeast Asia. This paper is written in an effort to closely consider his story and style through 3 films, , , and . The main character in is a Korean Chinese woman, Choi Sun Hee, who sells Kimchi in outskirt of a city. is the story about the relationship between Hangai, a Mongolian man who plants trees in deserted prairie and North Korean mother and son in defection from North Korea. treats a group of characters floating around in Iri, the city that was vanished by the explosion 30 years ago. The first thing of the style of Jang Ryul building the diaspora viewpoint is time, crossing the floating space. The second one is the inversion of on-screen space and off-screen space or center and periphery. The third one is the absence of language. Given the fact that discourses about the identity of East Asia flourish these days, his movies, as the fruit of consistent attempt to search for East Asian identity within the filmmaking process, deserve more attentions.