1 |
Pyysalo, S., Ginter, F., Heimonen, J., Bjorne, J., Boberg, J., Jarvinen, J., & Salakoski, T. 2007. "BioInfer: A corpus for information extraction in the biomedical domain." BMC Bioinformatics, 8(50).
|
2 |
Sekimizu, T., Park, H. S., & Tsujii, J. 1998. "Identifying the interaction between genes and gene products based on frequently seen verbs in MEDLINE abstracts." Workshop on genome informatics, 9: 62-71.
|
3 |
Temkin, Joshua M., & Gilder, Mark R. 2003. "Extraction of protein interaction information from unstructured text using a context-free grammar." Bioinformatics, 19(16): 2046-2053.
DOI
|
4 |
Vishwanathan, S. V. N., & Smola, A. J. 2003. "Fast kernels for string and tree matching." Advances in Neural Information Processing Systems, MIT Press, 15: 569-576.
|
5 |
Wikipedia. [online]. [cited 2010.11.1]. .
|
6 |
Zhang, M., Zhang, J., Su, J., & Zhou, G. 2006. "A composite kernel to extract relations between entities with both flat and structured features." 21st International Conference on Computational Linguistics and 44th Annual Meeting of the ACL, 825-832.
|
7 |
Zhou, D., & He, Y. 2008. "Extracting interactions between proteins from the literature." Journal of Biomedical Informatics, 41: 393-407.
DOI
|
8 |
Gondy, L., Hsinchun, C., & Martinez, Jesse D. 2003. "A shallow parser based on closed-class words to capture relations in biomedical text." Journal of Biomedical Informatics, 36(3): 145-158.
DOI
|
9 |
Lesk, M. 1986. "Automatic sense disambiguation using machine readable dictionaries: How to tell a pine cone from an ice cream cone." Proceedings of the 5th annual international conference on Systems documentation, 24-26.
|
10 |
Marcotte, Edward M., Xenarios, I., & Eisenberg, D. 2001. "Mining literature for protein-protein interactions." Bioinformatics, 17(4): 359-363.
DOI
|
11 |
Miwa, M., Saetre, R., Miyao, Y., & Tsujii, J. 2009. "Protein-protein interaction extraction by leveraging multiple kernels and parsers." International Journal of Medical Informatics.
|
12 |
Moschitti, A. 2006. "Making tree kernels practical for natural language learning." Proceedings of EACL.
|
13 |
Nedellec, C. 2005. "Learning language in logic - genic interaction extraction challenge." Proceedings of LLL'05, 31-37.
|
14 |
Nikolai, D., Anton, Y., Sergei, E., Svetalana, N., Alexander, N., & llya, M. 2004. "Extracting human protein interactions from MEDLINE using a full-sentence parser." Bioinformatics, 20(5): 604-611.
DOI
|
15 |
Ono, T., Hishigaki, H., Tanigam, A., & Takagi, T. 2001. "Automated extraction of information on protein-protein interactions from the biological literature." Bioinformatics, 17(2): 155-161.
DOI
|
16 |
Pyysalo, S., Airola, A., Heimonen, J., Bjorne, J., Ginter, F., & Salakoski, T. 2008. "Comparative analysis of five protein-protein interaction corpora." BMC Bioinformatics, 9(S6).
|
17 |
Banerjee, S., & Pedersen, T. 2002. "An adapted Lesk algorithm for word sense disambiguation using WordNet." Proceedings of the 3rd International Conference on Intelligent Text Processing and Computational Linguistics(CICLing-2002), 136-45.
|
18 |
Fundel, K., Küffner, R., & Zimmer, R. 2007. "RelEx - Relation extraction using dependency parse trees." Bioinformatics, 23: 365-371.
DOI
|
19 |
Airola, A., Pyysalo, S., Bjorne, J., Pahikkala, T., Ginter, F., & Salakoski, T. 2008. "All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning." BMC Bioinformatics, 9(S2).
|
20 |
Andrade, Miguel A. & Valencia, A. 1998. "Automatic extraction of keywords from scientific text: Application to the knowledge domain of protein families." Bioinformatics, 14(7): 600-607.
DOI
|
21 |
Blaschke, C., Andrade, M., Ouzounis, C., & Valencia, A. 1999. "Automatic extraction of biological information from scientific text: Protein-protein interactions." Proceedings of the International Conference on Intelligent Systems for Molecular Biology, 7: 60-67.
|
22 |
Bunescu, R., Ge, R., Kate, R., Marcotte, E., Mooney, R., Ramani, A., & Wong, Y. 2005. "Comparative experiments on learning information extractors for proteins and their interactions." Artiicial Inteligence in Medicine, Summarization and Information Extraction from Medical Documents, 33: 139-155.
|
23 |
Collins, M., & Duffy, N. 2001. "Convolution kernels for natural language." NIPS-2001.
|
24 |
Craven, M., & Kumlien, J. 1999. "Constructing biological knowledge bases by extracting information from text sources." Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, 77-86.
|
25 |
Ding, J., Berleant, D., Nettleton, D., & Wurtele, E. 2002. "Mining MEDLINE: abstracts, sentences, or phrases?" Proceedings of PSB'02, 326-337.
|