• Title/Summary/Keyword: growth modeling

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Three-dimensional Algal Dynamics Modeling Study in Lake Euiam Based on Limited Monitoring Data (제한된 측정 자료 기반 의암호 3차원 조류 예측 모델링 연구)

  • Choi, Jungkyu;Min, Joong-Hyuk;Kim, Deok-Woo
    • Journal of Korean Society on Water Environment
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    • v.31 no.2
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    • pp.181-195
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    • 2015
  • Algal blooms in lakes are one of major environmental issues in Korea. A three-dimensional, hydrodynamic and water quality model was developed and tested in Lake Euiam to assess the performance and limitations of numerical modeling with multiple algal groups using field data commonly collected for algal management. In this study, EFDC was adopted as the basic model framework. Simulated vertical profiles of water temperature, dissolved oxygen and nutrients monitored at five water quality monitoring stations from March to October 2013, which are closely related to algal dynamics simulation, showed good agreement with those of observed data. The overall spatio-temporal variations of three algal groups were reasonably simulated against the chlorophyll-a levels of those estimated from the limited monitoring data (chlorophyll-a level and cell numbers of algal species) with the RMSEs ranging from 2.6 to $17.5mg/m^3$. Also, note that $PO_4-P$ level in the water column was a key limiting factor controlling the growth of three algal groups during most of simulation period. However, the algal modeling results were not fully attainable to the levels of observation during short periods of time showing abrupt increase in algae throughout the lake. In particular, the green algae/cyanobacteria and diatom simulations were underestimated in late June to early July and early October, respectively. The results shows that better understanding of internal algal processes, neglected in most algal modeling studies, is necessary to predict the sudden algal blooms more accurately because the concentrations of external $PO_4-P$ and specific algal groups originated from the tributaries (mainly, dam water releases) during the periods were too low to fully capture the sharp rise of internal algal levels. In this respect, this study suggests that future modeling efforts should be focused on the quantification of internal cycling processes including vertical movement of algal species with respect to changes in environmental conditions to enhance the modeling performance on complex algal dynamics.

Research Trend of DFN Modeling Methodology: Representation of Spatial Distribution Characteristics of Fracture Networks (DFN 모델링 연구 동향 소개: 균열망의 공간적 분포 특성 모사를 중심으로)

  • Jineon, Kim;Jiwon, Cho;iIl-Seok, Kang;Jae-Joon, Song
    • Tunnel and Underground Space
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    • v.32 no.6
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    • pp.464-477
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    • 2022
  • DFN (discrete fracture network) models that take account of spatial variability and correlation between rock fractures have been demanded for analysis of fractured rock mass behavior for wide areas with high reliability, such as that of underground nuclear waste repositories. In this regard, this report describes the spatial distribution characteristics of fracture networks, and the DFN modeling methodologies that aim to represent such characteristics. DFN modeling methods have been proposed to represent the spatial variability of rock fractures by defining fracture domains (Darcel et al., 2013) and the spatial correlation among fractures by genetic modeling techniques that imitate fracture growth processes (Davy et al., 2013, Libby et al., 2019, Lavoine et al., 2020).These methods, however, require further research for their application to field surveys and for modeling in-situ rock fracture networks.

A Kinetic Modeling for the Dynamics of Hybridoma Cells in Suspension Culture (현탁배양 하이브리도마 세포의 속도론적 모델링)

  • 정연호;박현규최정우
    • KSBB Journal
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    • v.11 no.3
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    • pp.276-287
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    • 1996
  • Batch suspension cultures of hybridoma cell were performed with various initial glutamine concentrations to investigate the effects of glutamine on cell growth and death, monoclonal antibody production, glucose and glutamine consumption, and the production of lactate and ammonium ion. An mathematical kinetic model was formulated to describe the kinetics of cell growth, the consumption of nutrients (glucose and glutamine), and the production of monoclonal antibody and waste metabolites (lactate and ammonium ion) based on experimental data. An equation for the specific growth rate was developed such that superimposed Monod equation in glucose and glutamine, with non-competitive type inhibition relations in ammonium ion and lactate. The inhibition constant for lactate was inversely proportional to the lactate concentration. The specific death rate was considered to be a function of glucose, glutamine, ammonium ion and lactate concentration.

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Establishment of the Measurement Model about the Adequate Urban Development Density using System Dynamics (시스템다이내믹스를 활용한 도시개발밀도의 적정성 평가 모델 구축 연구)

  • 전유신;문태훈
    • Korean System Dynamics Review
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    • v.4 no.2
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    • pp.71-94
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    • 2003
  • The purpose of this dissertation is to build a development density control model and estimate optimum developmental density level for a sustainable urban growth management. To develop the model, system dynamics modeling approach was used. The model was developed to analyze how urban growth, transition, and decay occur depending on the interaction among population, houses, industry structure, land and urban infrastructure such as road, water supply, and sewage treatment facilities. The model was applied to Anyang city to estimate optimum density level. Extensive computer simulation was conducted to find out the maximum numbers of population, industry structure, houses, and cars that can be adequately sustained with the current Anyang city's infrastructure capacity. The computer simulation result shows that the city is overpopulated by some 90,000 people. It nab analyzed that 20% increase of existing capacity of urban infrastructure is necessary to support current population of Anyang city. To reduce the population to the adequate level whereby the current urban infrastructure can sustain, the current city regulation on floor area ratio needs be strengthened at least 20% to 35%.

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Study on the Relationships among Water Quality Parameters in Agricultural Reservoirs (농업용 저수지의 수질항목간의 상관관계 조사)

  • 전지홍;함종화;윤춘경;황순진;김호일
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.44 no.3
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    • pp.136-145
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    • 2002
  • Monitoring data from agricultural reservoirs throughout the country were analyzed to evaluate the limiting factor fur algal growth and relationships between Chl-a, total phosphorus (TP), and total nitrogen (TN). Total 394 reservoirs ranging from below 500 ㎥ to over 50 million ㎥ in storage volume were monitored from 1990 to 2000 with respect to TP, W, Chl-a, and their annual mean values were used fur the analysis. Based on N/P ratio, the dominant limiting factor for algal growth was turned out to be phosphorus in agricultural reservoirs (about 83%). Therefore, the proper managements of phosphorus in the agricultural watershed appear to be crucial to prevent excessive on algal growth. The effects of phosphorus and nitrogen ware most eminent during the summer period. And the effect of nutrients on the algal biomass (Chl-a) development appeared to be greater in smaller the reservoirs than in larger ones. Generally, Chl-a and TP demonstrated a close relationship while that of Chl-a and TN showed less correlationship. Chl-a and chemical oxygen demand (COD) also showed a good relationship. Beth ratios of Chl-a / TP and Chl-a / COD relationships were within the range of literature values. Quantitative analysis of TP and COD is relatively convenient compared to that of Chl-a, and the relationship between TP and COD and Chl-a from this study could be used beneficially for water quality management of agricultural reservoirs and related water quality modeling.

Targeting Acetate Kinase: Inhibitors as Potential Bacteriostatics

  • Asgari, Saeme;Shariati, Parvin;Ebrahim-Habibi, Azadeh
    • Journal of Microbiology and Biotechnology
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    • v.23 no.11
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    • pp.1544-1553
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    • 2013
  • Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of molecular modeling methods. In the next stage, by considering the structure of the catalytic intermediate, trifluoroethanol (TFE) and trifluoroethyl butyrate were proposed as potential inhibitors of the enzyme. The putative binding mode of these compounds was studied with the use of a docking program, which revealed that they can fit well into the enzyme. To study the role of these potential enzyme inhibitors in the metabolic pathway of E. coli, their effects on the growth of this bacterium were studied. The results showed that growth was considerably reduced in the presence of these inhibitors. Changes in the profile of the metabolic products were studied by proton nuclear magnetic resonance spectroscopy. Remarkable changes were observed in the quantity of acetate, but other products were less altered. In this study, inhibition of growth by the two inhibitors as reflected by a change in the metabolism of E. coli suggests the potential use of these compounds (particularly TFE) as bacteriostatic agents.

The Longitudinal Relationship between Korean Youth's Social Withdrawal, Depression and Community Sense Using Latent Growth Model : A Mediating Effect of Achievement Values (잠재성장모형을 활용한 중학생의 사회적 위축 및 우울과 공동체 의식 간의 종단적 관계 연구 : 성취가치의 매개효과)

  • Oh, Min-Ah;Jo, Hye-Young
    • Journal of Families and Better Life
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    • v.35 no.1
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    • pp.125-137
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    • 2017
  • The purpose of this study was to investigate the longitudinal relationship between Korean youth's social withdrawal, depression and community sense mediated by achievement values. For this purpose, we analyzed three years of the longitudinal panel data (2011-2013) of the Korean Children and Youth Panel Survey (KCYPS). Data were collected from 2,351 first year middle school students using the latent growth model using SPSS 18.0 and AMOS 22.0. The main analysis results were as follows. First, social withdrawal and depression decreased and community sense increased as time passed. These results supported the linear change model. Second, the initial status of social withdrawal and depression had effects on the initial status and change rates of community sense. Achievement values, the partial mediator, had a positive influence on initial community sense but had a negative influence on change rates of community sense. We discussed how to improve Korean youth's community sense based on these results.

Influence of Asthma on the Longitudinal Trajectories of Cigarette Use Behaviors From Adolescence to Adulthood Using Latent Growth Curve Models

  • Bae, Jisuk
    • Journal of Preventive Medicine and Public Health
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    • v.48 no.2
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    • pp.111-117
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    • 2015
  • Objectives: While epidemiologic research indicates that the prevalence of risk-taking behaviors including cigarette smoking among young people with asthma is substantial, the longitudinal patterns of cigarette smoking in this vulnerable population have received little attention. The aim of this study was to evaluate differences in the longitudinal trajectories of cigarette use behaviors from adolescence to adulthood between young people with and without asthma. Methods: Data from the National Longitudinal Study of Adolescent to Adult Health (Add Health) during the years 1994 to 1995 (Wave I, adolescence), 2001 to 2002 (Wave III, young adulthood), and 2007 to 2008 (Wave IV, adulthood) were analyzed (n=12 244). Latent growth curve models were used to examine the longitudinal trajectories of cigarette use behaviors during the transition to adulthood according to asthma status. Results: Regardless of asthma status, the trajectory means of cigarette use behaviors were found to increase, and then slightly decrease from adolescence to adulthood. In total participants, there were no statistically significant differences in initial levels and changes in cigarette use behaviors according to asthma status. However, in select sex and race subgroups (i.e., females and non-whites), former asthmatics showed greater escalation in cigarette use behaviors than did non-asthmatics or current asthmatics. Conclusions: This study indicated that the changing patterns of cigarette use behaviors during the transition to adulthood among young people with asthma are comparable to or even more drastic than those among young people without asthma.

Characterization of a Myostatin-like Gene from the Scallop Patinopecten yessoensis

  • Kim, Hyun-Woo;Kim, Hak-Jun;Yoo, Myong-Suk
    • Fisheries and Aquatic Sciences
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    • v.10 no.1
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    • pp.16-23
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    • 2007
  • Myostatin (GDF8) is a growth factor that limits muscle tissue growth and development in vertebrates. We isolated a myostatin-like gene (Py-MSTN) from the marine invertebrate, the scallop Patinopecten yessoensis. Py-MSTN was highly expressed in the adductor muscle and in the gill unexpectedly. Amino acid analysis showed that Py-MSTN has 49% amino acid sequence identity and 64% similarity to human myostatin (Hs-MSTN), and 42% identity and 61% similarity to myoglianin, the only invertebrate homolog. These results indicated that Py-MSTN may be functionally similar to the vertebrate MSTN than the invertebrate homolog. Phylogenetic analysis suggested that Py-MSTN is an ancestral form of vertebrate MSTN and GDF11 and does not belong to other $TGF-{\beta}$ family members. Molecular modeling showed that Py-MSTN exhibits a similar tertiary structure to mammalian BMP7, a member of $TGF-{\beta}$ family. In addition, the amino acid residues which contact extracellular domain of the receptor were relavively conserved. Given these results, we propose that Py-MSTN is a functionally active member of the $TGF-{\beta}$ family and is involved In muscle growth and regulation.

Development of Simple Bimodal Model for Charged Particle Coagulation (Bimodal 방법을 이용한 하전입자 응집 모델링)

  • Kim, Sang Bok;Song, Dong Keun;Hong, Won Seok;Shin, Wanho
    • Particle and aerosol research
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    • v.10 no.1
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    • pp.27-31
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    • 2014
  • A simple bimodal model has been developed to analyze charged particle coagulation by modifying previously suggested bimdal model for evolution of particle generation and growth. In the present model, two monodisperse modes are used and 40 charge nodes are assigned to each mode to account both change of the particle size and charge distribution. In addition, we also implemented the effect of electrostatic dispersion loss in the present model. Based on the developed model, we analyzed coagulation of asymmetric bipolar charged particles by computing evolutions of particle number concentration, geometric mean diameter of particles, charge asymmetric ratio and geometric standard deviation of particle size distribution for various initial charge asymmetric ratios. The number concentration of asymmetric bipolar charged particles decreases faster than that of neutral particles but that does not give faster growth of particles since the electrostatic dispersion loss overwhelms particle growth by coagulation.