• Title/Summary/Keyword: genetic drift

Search Result 58, Processing Time 0.082 seconds

Harmony search algorithm for optimum design of steel frame structures: A comparative study with other optimization methods

  • Degertekin, S.O.
    • Structural Engineering and Mechanics
    • /
    • v.29 no.4
    • /
    • pp.391-410
    • /
    • 2008
  • In this article, a harmony search algorithm is presented for optimum design of steel frame structures. Harmony search is a meta-heuristic search method which has been developed recently. It is based on the analogy between the performance process of natural music and searching for solutions of optimization problems. The design algorithms obtain minimum weight frames by selecting suitable sections from a standard set of steel sections such as American Institute of Steel Construction (AISC) wide-flange (W) shapes. Stress constraints of AISC Load and Resistance Factor Design (LRFD) and AISC Allowable Stress Design (ASD) specifications, maximum (lateral displacement) and interstorey drift constraints, and also size constraint for columns were imposed on frames. The results of harmony search algorithm were compared to those of the other optimization algorithms such as genetic algorithm, optimality criterion and simulated annealing for two planar and two space frame structures taken from the literature. The comparisons showed that the harmony search algorithm yielded lighter designs for the design examples presented.

Phase Transitions and Phase Diagram of the Island Model with Migration

  • Park, Jeong-Man
    • Journal of the Korean Physical Society
    • /
    • v.73 no.9
    • /
    • pp.1219-1224
    • /
    • 2018
  • We investigate the evolutionary dynamics and the phase transitions of the island model which consists of subdivided populations of individuals confined to two islands. In the island model, the population is subdivided so that migration acts to determine the evolutionary dynamics along with selection and genetic drift. The individuals are assumed to be haploid and to be one of two species, X or Y. They reproduce according to their fitness values, die at random, and migrate between the islands. The evolutionary dynamics of an individual based model is formulated in terms of a master equation and is approximated by using the diffusion method as the multidimensional Fokker-Planck equation (FPE) and the coupled non-linear stochastic differential equations (SDEs) with multiplicative noise. We analyze the infinite population limit to find the phase transitions from the monomorphic state of one type to the polymorphic state to the monomorphic state of the other type as we vary the ratio of the fitness values in two islands and complete the phase diagram of our island model.

Current Advances in Cryopreservation of Microalgae

  • Nugroho, Wahyu Sri Kunto;Kim, Do-A;Kim, Dong-Woo;Koo, Bon-Won;Hur, Young Baek;Kim, Hak Jun
    • Journal of Marine Life Science
    • /
    • v.1 no.1
    • /
    • pp.70-78
    • /
    • 2016
  • Microalgae are of significant importance for future biotechnological applications. Many microalgae banks or laboratories attempt to maintain various microalgae for further research purposes. Cryopreservation has been preferred to reduce a labor-intensive and costly routine sub-culturing. Cryopreservation can also diminish the genetic drift risk. However, cryopreservation as a long term storage of microalgae method are still in developing progress because it cannot be generalized for all microalgae. Microalgae types, cryoprotectant agents (CPAs) types, freezing and thawing methods are the most important factors that should be considered for cryopreservation. In this short review the basic principles and the current advanced of microalgae cryopreservation methods are discussed with a suggested starting parameters for microalgae cryopreservation.

Genetic Diversity in Three Populations of Hibiscus hamabo(Malvaceae) in Jeju Island, Korea (제주도 황근(Hibiscus hamabo) 집단의 유전적 다양성)

  • Kim, Young-Dong;Kim, Ki-Joong;Kim, Sung-Hee;Kim, Hyeong-Tae
    • Korean Journal of Plant Taxonomy
    • /
    • v.37 no.2
    • /
    • pp.115-129
    • /
    • 2007
  • Using internal transcribed spacer (ITS) sequences and inter-simple sequence repeats (ISSRs) data, genetic diversity of a rare species, Hibiscus hamabo Siebold & Zucc. was examined for 3 populations in Jeju Island, Korea. A total of 14 nucleotide (excluding 3 ambiguous nucleotide) site variation in the ITS was observed from 18 individuals (Population 1, Hadori), which differed up to 13 bp in pair-wise comparison. On the contrary, the ITS sequences of all individuals in Populations 2 and 3 were identical. Genetic diversity estimates including Nei's gene diversity (h) generated by ISSR data were substantially high in Population 1 compared to other two populations. Low genetic variation in Populations 1 and 2 is considered due to genetic drift (bottleneck effect) and limited gene flow in these populations. Considering the differences in genetic diversity, protection of the Population 1(Hadori) is very critical for in situ conservation of Hibiscus hamabo in Korea. If ex situ conservation is required, making the full use of Population 1 will be most efficient.

Vibration Control Performance Evaluation of Hybrid Mid-Story Isolation System for a Tall Building (하이브리드 중간층 지진격리시스템의 고층 건물 진동 제어 성능 평가)

  • Kim, Hyun-Su;Kang, Joo-Won
    • Journal of Korean Association for Spatial Structures
    • /
    • v.18 no.3
    • /
    • pp.37-44
    • /
    • 2018
  • A base isolation system is widely used to reduce seismic responses of low-rise buildings. This system cannot be effectively applied to high-rise buildings because the initial stiffness of the high-rise building with the base isolation system maintains almost the same as the building without the base isolation system to set the yield shear force of the base isolation system larger than the design wind load. To solve this problem, the mid-story isolation system was proposed and applied to many buildings. The mid-story isolation system has two major objectives; first to reduce peak story drift and second to reduce peak drift of the isolation story. Usually, these two objectives are in conflict. In this study, a hybrid mid-story isolation system for a tall building is proposed. A MR (magnetorheological) damper was used to develop the hybrid mid-story isolation system. An existing building with mid-story isolation system, that is "Shiodome Sumitomo Building" a high rise building having a large atrium in the lower levels, was used for control performance evaluation of the hybrid mid-story isolation system. Fuzzy logic controller and genetic algorithm were used to develop the control algorithm for the hybrid mid-story isolation system. It can be seen from analytical results that the hybrid mid-story isolation system can provide better control performance than the ordinary mid-story isolation system and the design process developed in this study is useful for preliminary design of the hybrid mid-story isolation system for a tall building.

Genetic Variation of nSSR Markers in Natural Populations of Abies koreana and Abies nephrolepis in South Korea (남한지역 구상나무와 분비나무 집단에서의 nSSR 표지 유전 변이)

  • Hong, Yong-Pyo;Ahn, Ji-Young;Kim, Young-Mi;Yang, Byeong-Hoon;Song, Jeong-Ho
    • Journal of Korean Society of Forest Science
    • /
    • v.100 no.4
    • /
    • pp.577-584
    • /
    • 2011
  • To estimate level of genetic variation and genetic differentiation among populations of 3 populations in Abies koreana and 5 populations in Abies nephrolepis, 5 nSSR markers were analyzed. Except 1 locus where too many alleles were observed excessively, population genetic parameters were recalculated with 4 loci. Mean expected heterozygosities ($H_e$) were 0.292 in A. koreana and 0.220 in A. nephrolepis, respectively. In both species, positive fixation coefficient was estimated (F=0.065 for A. koreana and F=0.095 for A. nephrolepis), which suggests that there is an excess of homozygotes relative to Hardy-Weinberg expectations within populations. Relatively high degree of population differentiation was observed in A. koreana ($F_{ST}=0.063$). compared to that of A. nephrolepis ($F_{ST}=0.039$). From 3-level Hierarchical estimation of F-staticstics, only 4.9% of the genetic variation was allocated between species ($F_{PT}$), which suggested that most of genetic variation was shared between two species. On the basis of results from analysis of genetic relationships among populations, 2 populations of A. koreana (Mt. Halla and Mt. Deogyu) were genetically distinct from the populations of A. nephrolepis but a population of Mt. Jiri was allocated within a group of populations of A. nephrolepis. Populations of both species seemed to have undergone genetic drift due to gradual decrease in population size induced by global warming after the last glacier, which resulted in increase of homozygotes by inbreeding. It could be also postulated that these species might be diverged recently and It is likely that the two species have not fully speciated yet.

Generic optimization, energy analysis, and seismic response study for MSCSS with rubber bearings

  • Fan, Buqiao;Zhang, Xun'an;Abdulhadi, Mustapha;Wang, Zhihao
    • Earthquakes and Structures
    • /
    • v.19 no.5
    • /
    • pp.347-359
    • /
    • 2020
  • The Mega-Sub Controlled Structure System (MSCSS), an innovative vibration passive control system for building structures, is improved by adding lead rubber bearings (LRBs) on top of the substructure. For the new system, a genetic algorithm is used to optimize the dynamic parameters and distributions of dampers and LRBs. The program uses various seismic performance indicators as optimization objectives, and corresponding results are compared. It is found that the optimization procedure for maximizing the energy dissipation ratio yields the best solutions, and optimized models have consistent seismic performances under different earthquakes. Seismic performances of optimized MSCSS models with and without LRBs, as well as the traditional Mega-Sub Structure model, are evaluated and compared under El Centro wave, Taft wave and 20 other artificial waves. In both elastic and plastic analysis, the model with LRBs shows significantly smaller story drift and horizontal acceleration than those of the other two models, and fewer plastic hinges are developed during severe earthquakes. Energy analysis also shows that LRBs installed in proper locations increase the deformation and energy dissipation of dampers, thereby significantly reduce the kinetic, potential, and hysteretic energy in the structure. However, LRBs do not have to be mounted on all the additional columns. It is also demonstrated that LRBs at unfavorable locations can decrease the energy dissipation for dampers. After LRBs are installed, the optimal damping coefficient and the optimal damping exponent of dampers are reduced to produce the best damping effect.

Genetic Differentiation between Up- and Downstream Populations of Tribolodon hakonensis (Pieces: Cyprinidae) (삼척오십천 상.하류에 분포하는 황어, Tribolodon hakonensis (잉어과) 집단의 유전적 분화)

  • Lee, Sihn-Ae;Lee, Wan-Ok;Suk, Ho-Young
    • Korean Journal of Environment and Ecology
    • /
    • v.26 no.4
    • /
    • pp.475-483
    • /
    • 2012
  • Tribolodon hakonensis(Cypriniformes; Leuciscinae) is anadromous; they are born in freshwater, migrate back to the ocean, then return to their home stream for spawning from mid-March to early-June. Here, five microsatellites were used to assess the level of gene flow among T. hakonensis populations from the Samcheok-Oship Stream, South Korea. The frequencies of dominant alleles across several loci differed between down-and upstream populations divided by several weirs, and pairwise multilocus $F_{ST}$ estimate was significantly high(0.083). However, there were no signs of any loss of genetic variation in the upstream population. Assignment tests of individuals in admixture model(K=2) to a set of baseline samples showed fairly correct assignment to each cluster; all of upstream individuals sere included in the first cluster, while the majority of downstream individuals(65%) comprise the second cluster. These results indicate reduced gene flow between up- and downstream populations but allowing passive downstream drift. It is likely that man-made structures might at least partially be a factor for creating and consolidating the current distribution patterns of genetic variation among T. hakonensis populations in the Samcheok-Oship Stream. This information will assist governing agencies in making informed decisions regarding conservation of anadromous fishes in Korean drainage systems.

Design of fuzzy logic Run-by-Run controller for rapid thermal precessing system (고속 열처리공정 시스템의 퍼지 Run-by-Run 제어기 설계)

  • Lee, Seok-Joo;Woo, Kwang-Bang
    • Journal of Institute of Control, Robotics and Systems
    • /
    • v.6 no.1
    • /
    • pp.104-111
    • /
    • 2000
  • A fuzzy logic Run-by-Run(RbR) controller and an in -line wafer characteristics prediction scheme for the rapid thermal processing system have been developed for the study of process repeatability. The fuzzy logic RbR controller provides a framework for controlling a process which is subject to disturbances such as shifts and drifts as a normal part of its operation. The fuzzy logic RbR controller combines the advantages of both fuzzy logic and feedback control. It has two components : fuzzy logic diagnostic system and model modification system. At first, a neural network model is constructed with the I/O data collected during the designed experiments. The wafer state after each run is assessed by the fuzzy logic diagnostic system with featuring step. The model modification system updates the existing neural network process model in case of process shift or drift, and then select a new recipe based on the updated model using genetic algorithm. After this procedure, wafer characteristics are predicted from the in-line wafer characteristics prediction model with principal component analysis. The fuzzy logic RbR controller has been applied to the control of Titanium SALICIDE process. After completing all of the above, it follows that: 1) the fuzzy logic RbR controller can compensate the process draft, and 2) the in-line wafer characteristics prediction scheme can reduce the measurement cost and time.

  • PDF

A Study on the Ecological Restoration Strategies for the Disturbed Landscapes (경관훼손지의 생태적 복구방안에 관한 연구)

  • Kim, Nam-Choon
    • Journal of the Korean Society of Environmental Restoration Technology
    • /
    • v.1 no.1
    • /
    • pp.28-44
    • /
    • 1998
  • This study was conducted to suggest the ecological restoration strategies for the disturbed landscapes by theoretical study. Especially, it is aimed to suggest three objectives for restoration by using native plants ; (1) prevention or reduction of wind and water erosion, (2) provision of food and cover for variety of animal species, (3) improvement of the visual or aesthetic quality of disturbed sites. The main results were summarized as follows. 1. Cooperation between restoration ecologists and restoration practitioners is needed to delineate a scientific approach to restoration ; (1) Being aware of published literature that describes similar work and/or establish general principles. (2) Preparedness to carry out proper experiments to test ideas. (3) Preparedness to monitor fundamental parameters in a restoration scheme. (4) Providing information about the behavior of species. (5) Publish results. 2. There are three models of succession in theories of plant succession. The tolerance and facilitation models were recommended to ecological restoration. The inhibition model applies in most secondary succession, but the actual species which are introduced first may inhibit the germination and growth of slower-growing species, or they may prevent the growth of other species whose propagules arrive later. 3. The objectives of erosion control, wildlife habitat provision, and visual quality improvement are not mutually exclusive. However, many revegetation practices in the past have emphasized one of these aspects at the expense of the others. 4. A native plant community can be the model of ecological restoration. By stylization/abstraction of native plant community, trying to learn the most essential characteristics of community types - environmental factors ; dominant, prevalent, and "visual essence" species composition - in order to use such information in restoration. 5. After developing mass/spaces plan, match plant communities to the mass/space plan. In utilizing community grouping, there needs aesthetic ability to understand design elements. 6. Several hydrophytes such as Pennisetum saccharifluous, Themeda triandra, Cirsium pendulum show relatively good germination rates. In case of mesophytes and xerophytes, Arundinella hina, Artemisia princeps, Oenothera odorata and legumes seem to have quick-germinating abilities at barren sites. Pinus thunbergii, Rhus chinensis, Evodia daniellii, Alnus firma and Albizzia julibrissin can be considered as "late succession" woody plants because they show low germinating rates and slow growing habitat. 7. The seeds used for restoration should be collected within a certain radius of where it will be planted. Consideration in genetic issues in the collection and use of germplasm can increase the odds for successful restoration efforts. 8. The useful model in the "drift" pattern occurs so abundantly in naturally evolving landscapes. As one species diminishes in density, a second or third species are increased. Thus, dynamic interactions between species are created. Careful using of "drift phenomenon" in planting was recommended. 9. Virtually no stand of vegetation today is immune from the introduction and/or spreading of exotic species. Therefore, the perpetuation of a restored sites requires conscious monitoring and management. Thus, management would be the most important process in ecological restoration. 10. In order to keep the sites "natural", alternative management strategies would be applied in management ; Atenative management strategies are decelerating successional process, accelerating successional processes or modifying species composition. As management tools, mechanical, chemical, biological or environmental factor manipulation, e.g., fire could be used.

  • PDF