• Journal of Life Science
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• v.26 no.7
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• pp.819-825
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• 2016

The present study was done to assess the diversity of the bacterial community associated with Ulva pertusa collected from Jeju Island using Restriction Fragment Length Polymorphism (RFLP) marker analysis. For RFLP analysis, a total of 145 bacterial strains associated with Ulva pertusa were screened and cultivated using Marine agar and R2A agar. The PCR amplicons of the 16S rRNA gene from all the isolated strains were digested with HaeIII and RsaI restriction enzymes and then classified into different groups according to their restriction patterns. Strains selected based on the RFLP patterns showed more than 91% 16S rRNA gene sequence similarity when compared with known bacterial species, which include 4 phyla - proteobacteria (alpha-proteobacteria, beta-proteobacteria, gamma-proteobacteria - 63%), firmicutes (11%), actinobacteria (4%), bacteroidetes (22%)–as well as 7 classes (actinobacteria, flavobacteriia, cytophagia, bacilli, α-proteobacteria, γ-proteobacteria, β-proteobacteria), 13 orders, 18 families, and 27 genera. These results confirmed a wide diversity of bacterial communities as contrasted with other regions. The newly isolated 10 strains, which show 16S rRNA sequence similarity of <97% compared to previously identified bacteria, could be noble species. Further experiments, such as morphological, physiological, and biochemical classification, are necessary to confirm the novelty of the newly isolated 10 strains.

• ALGAE
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• v.29 no.2
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• pp.75-99
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• 2014

A small dinoflagellate, Ansanella granifera gen. et sp. nov., was isolated from estuarine and marine waters, and examined by light microscopy, scanning electron microscopy, and transmission electron microscopy. In addition, the identity of the sequences (3,663-bp product) of the small subunit (SSU), internal transcribed spacer (ITS) region (ITS1, 5.8S, ITS2), and D1-D3 large subunit (LSU) rDNA were determined. This newly isolated, thin-walled dinoflagellate has a type E eyespot and a single elongated apical vesicle, and it is closely related to species belonging to the family Suessiaceae. A. granifera has 10-14 horizontal rows of amphiesmal vesicles, comparable to Biecheleria spp. and Biecheleriopsis adriatica, but greater in number than in other species of the family Suessiaceae. Unlike Biecheleria spp. and B. adriatica, A. granifera has grana-like thylakoids. Further, A. granifera lacks a nuclear fibrous connective, which is present in B. adriatica. B. adriatica and A. granifera also show a morphological difference in the shape of the margin of the cingulum. In A. granifera, the cingular margin formed a zigzag line, and in B. adriatica a straight line, especially on the dorsal side of the cell. The episome is conical with a round apex, whereas the hyposome is trapezoidal. Cells growing photosynthetically are $10.0-15.0{\mu}m$ long and $8.5-12.4{\mu}m$ wide. The cingulum is descending, the two ends displaced about its own width. Cells of A. granifera contain 5-8 peripheral chloroplasts, stalked pyrenoids, and a pusule system, but lack nuclear envelope chambers, a nuclear fibrous connective, lamellar body, rhizocysts, and a peduncle. The main accessory pigment is peridinin. The SSU, ITS regions, and D1-D3 LSU rDNA sequences differ by 1.2-7.4%, >8.8%, and >2.5%, respectively, from those of the other known genera in the order Suessiales. Moreover, the SSU rDNA sequence differed by 1-2% from that of the three most closely related species, Polarella glacialis, Pelagodinium bei, and Protodinium simplex. In addition, the ITS1-5.8S-ITS2 rDNA sequence differed by 16-19% from that of the three most closely related species, Gymnodinium corii, Pr. simplex, and Pel. bei, and the LSU rDNA sequence differed by 3-4% from that of the three most closely related species, Protodinium sp. CCMP419, B. adriatica, and Gymnodinium sp. CCMP425. A. granifera had a 51-base pair fragment in domain D2 of the large subunit of ribosomal DNA, which is absent in the genus Biecheleria. In the phylogenetic tree based on the SSU and LSU sequences, A. granifera is located in the large clade of the family Suessiaceae, but it forms an independent clade.

• Korean Journal of Ecology and Environment
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• v.35 no.3 s.99
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• pp.220-231
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• 2002

The fish fauna and Community were surveyed from April 2000 to September 2001 at 23 stations in the nam river, the first tributary located to the lower reach of the Nakdong River system. During the study period, 39 species belonging to 29 genera and 11 families were collected. Of which 14 species are endemic species or subspecies in Korea. Introduced species from other river system, O. bidens had not been collected at all after the report of Yang (1973) but many individuals were captured at main stream and tributary in this survey. Introduced species from abroad M. salmoides increased at most of stations. Dominant species in main stream were Z. platypus, O. bidens and H. labeo. On the contrary, Z. temmincki, Z. platypus and S. gracilis majimae dominated the tributaries. Diversity indices of main stream and tributaries were 0,979 and 0.966 respectively. St. 3 of main stream and St.1 and 16 of tributaries had high diversity indices (1.05, 0.962, 0.956) and lower dominant indices (0.102, 0.369, 0.200). As a whole, dominant index was 0.160, diversity index 1.044 and evenness index 0.656. It indicated that the community structure of this river was stable and diverse relatively.

• Korean Journal of Ecology and Environment
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• v.48 no.2
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• pp.115-121
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• 2015

In order to assess the water quality of Kumho river using Diatom Assemblage Index to organic water pollution (DAIpo) and to campare from the previous water quality, 5 sites in Kumho river were selected and assessed total of 6 times, every April and September from April 2010 to September 2012. As a result, 116 taxa were found in 2 Order, 3 Suborder, 7 Families, 26 Genera, 103 species and 13 varieties. Saprophilous species of 10 dominant species including Achnanthes minutissima, were increased as going to downstream sites. Correlation coefficients (r) between epilithic diatom communities and physicochemical factors were from - 0.62 to 0.71. Correlation coefficients (r) between TN and diatom indices (DAIpo, TDI) were 0.57 and 0.65, respectively. Therefore, epilithic diatom communities were greatly influenced by TN. The Correlation between DAIpo and TDI measured to be high in correlation coefficient (r=0.62) from the result of correlation analysis. Mean of DAIpo values ranged between 37.24~74.98 and decreased as going to downstream sites. Saprobic level was estimated as ${\beta}$-oligosaprobic at st. 1, ${\alpha}$-oligosaprobic at st. 2 and ${\beta}$-mesosaprobic at st. 3. But st. 4 and 5 which were ${\alpha}$-mesosaprobic and polysaprobic in the previous results, were improved as ${\beta}$-mesosaprobic. The RPId, general assessment of the water quality using DAIpo, was 52.27, which means the water quality of Kumho river was middle level.

• Korean Journal of Ecology and Environment
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• v.42 no.2
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• pp.232-241
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• 2009

The dynamics of phytoplankton communities were investigated for Upo wetland from march 2005 to December 2007 on monthly basis. During the investigation, totally 213 phytoplankton taxa which belonged to 86 genera of 35 families in 8 classes were observed. Chlorophyceae was the most diverse in the Upo wetland. Number of phytoplankton taxa was in the range 14${\sim}$50 for monthly investigation and the average number of taxa was 34${\pm}$10. Phytoplankton standing crops were the lowest value of 161 cells $mL^{-1}$ in August 2005 and the highest with 159,283 cells $mL^{-1}$ in August 2006. Especially during summer season in 2006, phytoplankton standing crops showed the highest value due to the waterbloom occurred by cyanobacteria. The number of the dominant taxa of Upo wetland were 13 and among them chlorophyceae and cyanophyceae dominated 8 times. In the view of seasonal changes of phytoplankton community, Upo wetland had high portion of cryptophyceae, dinophyceae and bacillariophyceae in the winter season and chlorophyceae and bacillariophyceae in the other season. However, in the summer season of 2006, cyanobacteria showed the highest portion. The diversity indices had range from 0.50 to 2.86 and showed the tendency of gradual decrease in each year.

• Korean Journal of Ecology and Environment
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• v.40 no.3
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• pp.468-480
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• 2007

The urbanization is altering the hydrology, water quality, channel form of waterway and changing the composition of biological communities in the aquatic ecosystem. Recently, towns grew bigger by the drift of large numbers of people and the medium and small leather and dyeing industries around the Pocheon and Youngpyeong streams. The discharges of sewage were increased by them. The UII (urban intensity index) was 85 (st. P-3) and 91 (st. P-6) in the Pocheon stream and about 20 in the Youngpyeong stream. A total 141 taxa of epilithic diatoms which were composed of 2 order, 8 family, 30 genera. Dominant species were Navicula saprophila, N. subminuscula, Nitzschia palea, Gomphonema pseudoaugur in the Pocheon stream and Achnanthes alteragracillima, A. convergens, A. minutissima, N. minima, N. fonticola, N. frustulum and Cymbella minuta var. silesiaca in the Youngpyeong stream. It Showed the different composition of dominant species by the urbanization near two streams. In the relationships between UII and environmental factors such as EC, BOD, COD, TN, TP and DAIpo, UII showed the high relations $(r^2>0.8)$. It was the difference of organic pollution according to urbanization. It therefore, was higher the relative abundance and more the numbers of saprophilous taxa in the Pocheon stream than the Youngpyeong stream. The water quality of two streams by biological indicators(DAIpo) was polysaprobic state(st. P-3, P-4, P-5) in the Pocheon stream and was oligosaprobic (Y-1), mesosaprobic (Y-2, 3) and polysaprobic state (Y-4) in the Youngpyeong stream during the investigation periods.

• The Journal of the Korean Society for Microbiology
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• v.22 no.3
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• pp.233-240
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• 1987

The amniotic fluid provides a medium in which the fetus can readily move, cushions him against possible injury and helps him maintain an even temperature. Besides above mentioned functions, investigators reported that human amniotic fluid contains host-resistance factors which prevent bacteria from producing infectious disease and this activity shows difference among human racial groups or bacterial genera, species and strains. 40 amniotic fluid specimens from Korean women in their second and third trimesters of pregnancy were examined for inhibiting the growth of Escherichia coli. And various factors which might affect bacterial growth inhibiting activity such as pH, initial inoculum size, concentration of amniotic fluid, and heat resistance, were also tested using a strongly inhibitory amniotic fluid specimen. Finally plate diffusion tests were carried out using other strongly inhibitory amniotic fluid. The following results were obtained: 1. Of the 40 fluid samples examined, 18 specimens(45%) had inhibitory activity and samples from women in their second trimester of pregnanancy showed non-inhibitory activity(2 specimens). 2. The pH of the fluids varied between 7.43 and 8.33. There was no correlation between pH and inhibitory activity. 3. No. 19 amniotic fluid showed bacteriostatic activity after 24 hours incubation when an inoculum of $10^2$ organisms per milliliter was used, but non-inhibitory with an inoculum of $10^3$ and $10^4$ bacteria per milliliter. 4. The content of amniotic fluid in culture media influenced E. coli growth. At 90 percent, E. coli was inhibited growth but at 10 percent and 50 percent. 5. Inhibitory activity of No. 19 amniotic fluid was retained after heating to $50^{\circ}C$ for 30 minutes or 100^{\circ}C$ for 30 minutes. 6. Plate diffusion tests with No. 27 amniotic fluid showed that 0.7ml amniotic fluid gave clear zone of growth inhibition around the central well but 0.2ml and 0.1ml amniotic fluids were not.

• Journal of the Korean Institute of Traditional Landscape Architecture
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• v.38 no.3
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• pp.35-49
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• 2020

The purpose of this study is to provide the baseline data for conservation and management of the ecosystem of urban forest by surveying and analysing the vascular plants distributed in Hwangseong Park, Gyeongju-si. The results of the survey of vascular plants from April 2018 to May 2020 were summarized as 338 taxa including 78 families, 222 genera, 296 species, 5 subspecies, 18 varieties, 6 forms, 4 hybrids and 9 cultivars, and 110 taxa of planted species and 235 taxa of native species were identified. The representative planting species was Liriope muscari. The 7 taxa of rare plants and 5 taxa of Korean endemic plants were investigated. The specific plants by floristic region were totally 24 taxa, which were 1 taxa of grade V, 4 taxa of grade IV, 7 taxa of grade III, 4 taxa of grade II and 8 taxa of grade I. The 57 taxa of naturalized plants and 6 taxa of invasive alien plants were showed. In particular, Chionanthus retusus represent traditional landscape trees in Korea and have high ecological value. Therefore, the old trees of Chionanthus retusus will have to be managed by assigning a number for each individual. The invasive alien plants will need periodic control and development of programs that can work in conjunction with civic groups.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.31 no.4
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• pp.471-476
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• 1998

Microbiological spoilage of marine fish is complex process occurring by bacteria, yeasts and molds. There have been rare study for saprophytic yeasts although having enormous numbers of bacteriological studies on the spoilage of marine fish. The 14 genera of yeasts isolated from mackerel (Scomber japonicus) with high frequency of occurrence were Candida sp., Rhodotorula sp., Torulopsis sp., Cryptotoccus sp. and Tricosporon sp. Among these ones Candida lipolytica was identified as the strongest proteolytic yeast, then named Candida lipolytica FM5 (C. lipolytica FM5). C. lipolytica FM5 showed optimum growth at $25^{\circ}C$, pH 7.0 and could grow at $5^{\circ}C$ and in medium containing $10\%$ sodium chloride, To evaluate the saprophytic activity of the selected strain, C, lipolytica FM5 and Pseudomonas fluorescens ATCC 17571 which is one of representative spoilage bacteria were individually inoculated into the sterilized fish muscle homogenates, and then pH changes and volatile basic nitrogen (VBN) values were checked during the storage at various temperatures. According to the experimental results, the productions of VBN by C. lipolytica FM5 in the fish muscle homogenates were 50 mg-N/100 g at $5^{\circ}C$, 152 mg-N/100 g at $15^{\circ}C$ and 379 mg-N/100 g at $25^{\circ}C$ for 1 week storage, respectively. Above results were nearly same as in case of Ps. fluorescens ATCC 17571 inoculation. It suggest that sapyophytic yeasts also have important role in spoilage of marine fish.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.32 no.4
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• pp.525-533
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• 1999

In the Korea Strait total of 96 copepod taxa (40 genera) were identified from the seasonal and vertically stratified samples. Species richness was the highest in fall and the abundance was the highest in spring. Spatial differences were not significant within each season, but was meaningful among seasons. The water column layers of high abundances were near bottom in spring, and surface in summer and fall. Species association of copepods was examined by the cluster analysis. There are the two different results on the timing of the intrusion of East Sea Cold Water to the Korea Strait in the deeper layer based on physical data [in winter (Lee et al., 1938) vs in summer (Cho and Kim (1998)]. This study based on the distributional characteristics of copepods supported Cho and Kim (1998)'s result. Although sea water temperatures was one of major controlling factors of the copepod distribution in this strait, biological interrelation among the species such as common or exclusive exploitation of the habitat was also responsible for the observed distributional patterns.