• Journal of Species Research
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• v.12 no.spc
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• pp.1-69
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• 2023

This study aims to establish a comprehensive, synthetic inventory system for the fauna and flora of Dokdo Island, Republic of Korea, which has been conducted by a specialized research group consisting of more than 50 experts. The research was conducted over five years(2015-2019) and supported by the National Institute of Biological Resources, Ministry of Environment, Republic of Korea. All possible publications on the fauna and flora of Dokdo Island over the last 68 years from 1952 to 2020 were reviewed. As a result, 1,302 species were found on Dokdo Island during the study period. An updated list of 1,963 species was created. This is expected to be of great help for the conservation and national publicity of important indigenous biological resources of Dokdo Island.

• Journal of Microbiology and Biotechnology
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• v.16 no.1
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• pp.68-76
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• 2006

Despites many attempts to explore the microbial diversity in kimchi fermentation, the predominant flora remains controversial to date. In the present study, major lactic acid bacteria (LAB) were investigated in Chinese cabbage kimchi in the early phase of fermention. For the samples over pH 4.0, viable cell counts of Leuconostoc and Pediococcus were $10^6\;cfu/ml$ and below $10^2\;cfu/ml$, respectively, and 20 isolates out of 172 were subjected to a biochemical identification (API 50 CH kit) as well as molecular-typing methods including ITSPCR with a RsaI digestion and 16s rRNA gene sequence analysis for species confirmation. Seven isolates were nicely assigned to Lb. brevis, 6 to Leuconostoc spp. (2 mesenteroides, 2 citreum, I carnosum, I gasicomitatum), 4 to Weissella (3 kimchii/cibaria, 1 hanii) and 2 to other Lactobacillus spp. (1 farciminis, 1 plantarum). On the other hand, the biochemical identification data revealed 9 strains of Lb. brevis, 6 strains of Leuconostocs,2 strains of Lb. plantarum and 1 strain each of Lb. coprophilus and Lactococcus lactis. However, a single isolates, YSM 16, was not matched to the ITS-PCR database constructed in the present study. Two Lb. brevis strains by API 50 CH kit were reassigned to W kimchii/cibaria, Lb. coprophilus or W hanii, respectively, judging from the results by the above molecular typing approaches. As a whole, the identification data obtained by the biochemical test were different from those of ITS-PCR molecular method by about $63\%$ at genus-level and $42\%$ at species-level. The data by the ITS-PCR method conclusively suggest that predominant LAB species is probably heterolactic Lb. brevis, followed by W kimchii/cibaria, Leuc. mesenteroides, and Leuc. citreum, in contrast to the previous reports [3] that Leuc. mesenteroides is the only a predominant species in the early phase kimchi fermentation.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.49 no.1
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• pp.53-60
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• 2016

Seasonal variations in seaweed communities were examined at Gwanmaedo and Yeongsando, Korea, from May 2014 to February 2015. Eighty-nine species were identified, including 11 green, 20 brown and 58 red algae. Seventy-three and 74 species were identified at Gwanmaedo and at Yeongsando, respectively. Sargassum thunbergii and Myelophycus simplex were the dominant species, comprising 60.89 and 39.50% of total biomass, respectively, and S. fusiforme was subdominant at the two sites. Of six functional seaweed forms, the coarsely-branched form was the most dominant, forming about 43% of the species number at Gwanmaedo and Yeongsando. Seasonal seaweed biomasses ranged between 53.10 and 172.85 g/m² (average 93.57 g dry wt./m²) and between 83.11 and 176.20 g (138.21 g/m²) at Gwanmaedo and Yeongsando, respectively. The vertical distribution from the high to low intertidal zone was S. thunbergii and Gloiopeltis furcata; M. simplex and S. thunbergii; and S. fusiforme at Gwanmaedo. Seaweed zonation was distinct at Yeongsando, with S. thunbergii and Gelidiophycus freshwateri; M. simplex and S. thunbergii; and S. thunbergii and S. fusiforme. Seaweed biomass, evenness index (J'), and diversity index (H') values were greater at Yeongsando (138.21 g/m², 0.51, 2.18 respectively) than at Gwanmaedo (93.57 g/m², 0.48, 2.04), indicating that the seaweed community at Yeongsando is more stable than that at Gwanmaedo.

• Korean Journal of Plant Taxonomy
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• v.53 no.2
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• pp.157-165
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• 2023

Paraphlomis koreana (Lamiaceae) was newly named and added to Korean flora in 2014. Paraphlomis belongs to the tribe Paraphlomideae, along with Ajugoides and Matsumurella. However, a recent study has suggested that P. koreana is morphologically similar to Matsumurella chinensis, making them difficult to distinguish from each other. Therefore, we aimed to examine the phylogenetic placement of P. koreana within the tribe and compare its genetic relationship with M. chinensis. We sequenced an additional complete plastid genome for an individual of P. koreana and generated sequences of nuclear ribosomal (nr) DNA regions of internal and external transcribed spacers (ITS and ETS) for two individuals of P. koreana. Maximum likelihood analyses based on two nrDNA regions (ITS and ETS) and four plastid DNA markers (rpl16 intron, rpl32-trnL, rps16 intron, and trnL-F) covering 13 Paraphlomis species and M. chinensis were conducted. Phylogenetic analyses concordantly supported that P. koreana forms a monophyletic group with M. chinensis. Moreover, our study revealed that P. koreana includes nrDNA sequences of M. chinensis as minor intra-individual variants, suggesting that the genetic divergence between the two taxa is incomplete and may represent intraspecific variation rather than distinct species. In conclusion, our findings suggest that the independent species status of P. koreana within Paraphlomis should be reconsidered.

• Korean Journal of Environment and Ecology
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• v.25 no.2
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• pp.156-165
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• 2011

It is selected seven sites for marine algal flora and community structure and investigated seasonally from December 2008 to November 2009 in Gogunsan Islands, the west coast of Korea. A total of 58 species including 10 green, 16 brown and 32 red algae were collected and identified. Among these species, 11 species were found throughout the year. Annual mean biomass in dry weight were 213.8 g $m^{-2}$ at Sinsido 1, 143.1 g $m^{-2}$ at Sinsido 2, 133.3 g $m^{-2}$ at Sinsido 3, 164.0 g $m^{-2}$ at Munyeodo, 116.9 g $m^{-2}$ at Seonyudo, and 145.1 g $m^{-2}$ at Jangjado. Maximum biomass was recorded in Sinsido 1, and minimum mean biomass was Sinsido 4. The dominant species based on biomass were Sargassum thunbergii, Ulva pertusa, Sargassum fusiforme and Corallina pilulifera. S. thunbergii was the representative alga occurred at all seasons. The flora investigated could be classified into six functional groups such as coarsely branched form (46.6%), filamentous form (27.6%), sheet form (17.2%), thick leathery form (3.4%), jointed calcareous form (3.4%) and crustose form (1.7%). The R/P, C/P and (R+C)/P value reflecting flora characteristics were 0.33~0.75, 1.11~2.50, 1.47~3.25, respectively. Diversity index (H') and dominance index (DI) indicated that stability of seaweed community of Gogunsan Islands was unstable and environmental conditions were bad. According to multidimensional scaling (MDS) and cluster analysis, Gogunsan Islands were divided into three distinct groups. The first group was Sinsido 2, Sinsido 3, Seonyudo and Muyeodo and the second group comprised Sinsido 1 and Jangjado and the other was Sinsido 4 due to meaningful difference in similarity.

• Korean Journal of Environment and Ecology
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• v.33 no.2
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• pp.131-167
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• 2019

Securing reference information (inventory) is essential for proper conservation and management of protected areas. Moreover, the investigation results should be available for comparison and evaluation. For this study, we established seven investigational lattices and carried out the field examinations to obtain comparable data in the Donggang river basin ecological and scenery conservation area, We conducted a total of 16 field surveys and identified a total of 830 taxa that is composed of 127 families, 408 genera, 716 species, 10 subspecies, 88 varieties, and 16 forms. We identified a total of 487 taxa in the 6th investigational lattice and 457 taxa in the 4th. We observed 6 species (grade II) designated by the Ministry of Environment as the endangered plants, one "species to monitor" designated by the Ministry of Environment, and 23 taxa designated as endemic species. Regarding the floristic characteristics plants, 15 taxa of grade V, 27 taxa of grade IV, 38 taxa of grade III, 31 taxa of grade II, and 19 taxa of grade I were identified. The 6th investigational lattice showed the largest number of taxa at 70. A total of 58 taxa were identified as the naturalized plant, and the 6th investigational lattice showed the most at 35 taxa. The Donggang river basin ecological and scenery conservation area was assessed to be an extremely important area to conserve and maintain plants species diversity not only in the regional scale but also national scale.

• Microbiology and Biotechnology Letters
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• v.38 no.3
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• pp.322-328
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• 2010

Fermented skate is a traditional Korean food popular in Southwestern area of Korea. It has a characteristic flavor and alkaline pH. In this study we tried to determine the microbial flora in fermented skate using two different approaches. In culture-independent method, we amplified V2 region of 16S rRNA gene by PCR and cloned them into pUC18 plasmid to construct 16S rDNA fragment library. BLAST searches for the sequences obtained from this library revealed that uncultured bacterium clone 054E11.b was the most dominant flora in this fermented fish. In culture-dependent method, we diluted suspension of skate and spreaded on MRS, PCA, and MacConkey plates. We identified colonies grown on those plates by using PCR amplification of V2 region of 16S rRNA and DNA sequencing. BLAST searches of those DNA sequences resulted in totally different species with the observations from the 16S rDNA library analysis. Discrepancies of results obtained from both approaches suggest that the agar plates used in culture-dependent method may be different from the real condition of fermented skate. Therefore, results from culture-independent approach using 16S rDNA fragment library analysis may reflect real microbial flora in fermented skate.

• Korean Journal of Weed Science
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• v.31 no.1
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• pp.41-48
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• 2011

This survey of weed population by different soil moisture with paddy-upland rotation was conducted to investigate information on weed flora and its ecology between two years. Weed species were assessed in April : 2009, 2010. Soil samples were taken from each study plot to assess the impact soil moisture on the occurrence and abundance of dominance weed species. Soil water of poorly drained field ranged from 10.2~18.2% more than 11.8~14.3% of somewhat poorly drained field. Weeds of fields composed of 19 species belonging to 12 families. Among 12 families, 6 weed species belonged to Compositae (31.6%) were the biggest family, Cruciferae were 2 species (10.5%), and Rubiaceae were 2 species (10.5%), respectively. Youngia japonica had the highest summed dominance ratio(SDR) (97.0%) and followed by Conyza canadensis (92.1%), Galium spurium (35.3%) and Hemistepta lyrata (28.4%) of somewhat poorly drainage in 2009. Artemisia princeps the highest SDR (100%) and followed by Stellaria alsine(55.2%), Y. japonica (38.3%) and Nasturtium officinale (28.5%) of poorly drainage in 2009. And, Stellaria alsine had the highest SDR (86.8%) and followed by Alopecurus aequalis (77.7%), Astragalus sinicus (68.7%) and Y. japonica (46.3%) of somewhat poorly drainage in 2010. S. alsine the highest SDR (93.7%) and followed by A. aequalis (78.6%), Nasturtium officinale (31.3%) and Y. japonica (30.4%) of poorly drainage in 2010. Simpson's index was calculated to 0.12~0.23, which showed that weed occurrence with different soil moisture in paddy-upland rotation and between years was various. Similarity coefficient between years was 43.0% (2009) and 74.2% (2010), which indicate a low diversity because of the moisture in the agro-ecosystem.

• Journal of Korean Society of Forest Science
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• v.103 no.3
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• pp.321-338
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• 2014

In the Natural Monument (No. 432) Jeju Sanghyo-dong Cymbidium kanran Habitat (39 ha), flora, vegetation diversity, stand structure, mirco-climate, canopy openness, light environment and soil temperature and moisture were quantified from Oct. 2013 to Feb. 2014. Compare to Seogwipo-si, daily mean temperature ($5.7^{\circ}C$) and moisture (75.8%) in study area were lower at $3.3^{\circ}C$ and 15%, respectively. Mean soil temperature and moisture were $16.5^{\circ}C$ and 37.3%, respectively, and mean litter layer depth (n = 81) was 4.3 cm. Mean canopy openness and light availability at forest floor were 15.5% and $8.5mol{\cdot}m^{-2}{\cdot}day^{-1}$, respectively. Total of 22 species including vascular and bryophyte plants and 6 vegetation group were observed. Castanopsis siebildii was dominant species in study area, and density and basal area were 1,777 stem/ha and $90.3m^2/ha$.

• The Korean Journal of Ecology
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• v.24 no.5
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• pp.273-280
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• 2001

We investigated the flora and vegetation structure of exotic plants along stream geomorphology and disturbance factors in the riparian zone of Seunggi stream, Incheon. Total 53 exotic plant species were found in the riparian corridors of Seunggi stream. The percentage of exotics ranged from 25% to 33% of total species richness, and its mean value was 24% in the whole riparian area. The percentage of exotics reflected the vulnerability of riparian zones to plant invasions by disturbances, and it could be used as an indicator of riparian system dysfunction. The distinct distribution patterns of exotic plants did not found in the lateral topographic features of the stream. Invasion and proliferation of the exotic plants were somewhat remarkable at terraces and bank slopes of the stream. Among various disturbance factors, plowing and trampling were important on the invasion of exotic plant species of Seunggi stream.