• Title/Summary/Keyword: end region

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Trimming conditions for DADA2 analysis in QIIME2 platform

  • Lee, Seo-Young;Yu, Yeuni;Chung, Jin;Na, Hee Sam
    • International Journal of Oral Biology
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    • v.46 no.3
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    • pp.146-153
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    • 2021
  • Accurate identification of microbes facilitates the prediction, prevention, and treatment of human diseases. To increase the accuracy of microbiome data analysis, a long region of the 16S rRNA is commonly sequenced via paired-end sequencing. In paired-end sequencing, a sufficient length of overlapping region is required for effective joining of the reads, and high-quality sequencing reads are needed at the overlapping region. Trimming sequences at the reads distal to a point where sequencing quality drops below a specific threshold enhance the joining process. In this study, we examined the effect of trimming conditions on the number of reads that remained after quality control and chimera removal in the Illumina paired-end reads of the V3-V4 hypervariable region. We also examined the alpha diversity and taxa assigned by each trimming condition. Optimum quality trimming increased the number of good reads and assigned more number of operational taxonomy units. The pre-analysis trimming step has a great influence on further microbiome analysis, and optimized trimming conditions should be applied for Divisive Amplicon Denoising Algorithm 2 analysis in QIIME2 platform.

A Study on the Diffusion of Silla Roof-End Tile (신라기와의 지방확산에 대한 검토)

  • Yang, Jong-Hyun
    • Korean Journal of Heritage: History & Science
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    • v.45 no.3
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    • pp.100-113
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    • 2012
  • In the midst of recent active excavation, lots of Silla(新羅) roof-end tiles are unearthed in Yeongnam area(嶺南地域). These are confirmed the same tile frame as the Silla tiles excavated in Gyeongju(慶州). It is represented by the Silla tiles excavated in Ingaksa Temple(麟角寺) excavation research. Roof-end tile with arabesque design(唐草文平瓦當) etc. including roof-end tile with lotus design(蓮花文圓瓦當) are judged to be the tile frame produced by the same frame of roof-end tile that was excavated in Gyeongju, Wolseong(月城) and Hwangyongsa Temple(皇龍寺址). There are three kinds of cases concerning the transportation of tile manufacture ; the roof-end tile manufactured in Gyeongju directly moved to each region, only tile frame moved to site to be manufactured there, and tile manufacturer moved to site to manufacture there. This article considers the case of the roof-end tile manufactured in Gyeongju that was directly moved to each region. In case of the Silla tiles excavated in region especially Ingaksa Temple, the aspects of tiles in accordance with different era show the repeated coexistence, expansion and maintenance. This situation is significant as a clue to understand the supply from Gyeongju not as temporary, but as continuous. On the other hand, if the Gyeongju tiles flowed directly into each region, and if the road was built of gravels and the means of transportation was cart, the damage from movement must never be prevented. On the contrary, transportation through waterway might be advantageous due to the reduction of labor and damage rate and the easiness of loading. Accordingly, it tells us why the ruins where roof-end tiles were excavated located near big and small rivers or streams. Of course there are some ruins located in a fixed distance, but the distance may be enough to endure the impact put on tiles from the overland movement. Therefore, in case of direct inflow form long distance, transportation must be finished by overland movement after waterway movement.

A Study on the Characteristic Analysis of End Effect in SLIM by the Combination of FEM and BEM (FEM과 BEM의 혼합 적용에 의한 LIM의 단부효과 특성에 관한 연구)

  • Im, Dal-Ho;Choi, Chang-Gyu;Kim, Gyu-Tak;Kim, Keun-Woong
    • Proceedings of the KIEE Conference
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    • 1989.07a
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    • pp.44-47
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    • 1989
  • In this paper, We analyzed the End Effect of Single-sided Linear Induction Motor by combination of Finite Element Method in Active region and 0- 1 order Boundary Element Method in Entry, Exit region.

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The Integrity Verification of Tube-end Sleeve by ECT (와전류탐상검사에 의한 튜브엔드 슬리브 건전성 검증)

  • Kim, Su Jin;Kwon, Kyung Joo;Suk, Dong Hwa;Park, Ki Tae
    • Transactions of the Korean Society of Pressure Vessels and Piping
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    • v.11 no.1
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    • pp.20-24
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    • 2015
  • Steam generator(S/G) tubes in pressurized water reactor (PWR's) are subject to several types of degradation. This degradation includes denting, pitting, intergranular attack(IGA), intergranular stress corrosion cracking(IGSCC), fatigue, fretting and wear. Degradation can be derived from either the primary side(inside) or the secondary side(outside) of the tube. Recent issue for tube degradation in domestic steam generator is the tube end cracking on seal weld region. The seal weld region at the tube end and tube itself is regarded as a pressure boundary between the primary side and the secondary side. One of the Westinghouse Model-F S/G has experienced tube end cracking and its number of plugging approximately becomes to the operating limit up to 5% due to tube end cracking which was reported as SAI/MAI(single/multiple axial indication) or SCI/MCI(Single/multiple circumferential indication) from the results of eddy current testing. Eddy current mock-up test was carried out to determine the origin of cracking whether it is from weld zone area or parent tube. This result was helpful to analyze crack location on ECT data. Correct action on this problem was the installation of tube-end sleeve. Last year, after removing 340 installed plugs from tubes, selected 269 tubes took tube-end sleeve installation. Tube-end sleeve brought pressure boundary from parent tube to installed sleeve tube. Tube-end sleeve has the benefit of reducing outage period and increasing more revenue than replacing S/G. This paper is provided to assist interest parties in effectively understanding this issue.

Experimental verification of shear and frictional characteristics in end milling (엔드밀링시 전단 및 마찰 특성의 실험적 검증)

  • Lee, Y. M.;S. H. Yang;M. Chen;S. I. Jang
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2003.06a
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    • pp.1789-1794
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    • 2003
  • As a new approach to analyze shear behaviors in the shear plane and chip-tool friction behaviors in the chip-tool contact region during an end milling process, this paper introduces a method to transform an end milling process to an equivalent oblique cutting process. In this approach, varying undeformed chip thicknesses and cutting forces in the up-and down-end milling process are replaced with the equivalent ones of oblique cutting. Accordingly, in the current paper, the shear and friction characteristics of end milling operations, up- and down-end milling, have been analyzed based on the equivalent oblique cutting models. Two series of cutting tests, up- and down-end milling tests and the equivalent oblique cutting tests to that, have been carried out to verify the validity of the analyses. And using the results of cutting tests the cutting characteristics of the up- and down-end milling processes have been thoroughly investigated.

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Deletion of N-terminal End Region of ErmSF Leads to an Amino Acid Having Important Role in Methyl Transfer Reaction (ErmSF에서 특이적으로 발견되는 N-terminal End Region의 점차적인 제거에 의한 활성에 중요한 아미노산의 규명)

  • Lee Hak Jin;Jin Hyung Jong
    • Korean Journal of Microbiology
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    • v.40 no.4
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    • pp.257-262
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    • 2004
  • ErmSF is one of the ERM proteins which transfer the methyl group to A2058 in 23S rRNA to confer the resis­tance to MLS (macrolide-lincosamide-streptogramin B) antibiotics on microorganism. Unlike other ERM pro­teins, ErmSF contains long N-terminal end region (NTER), of which $25\%$ is composed of arginine that is known to interact with RNA well. Gradual deletion of NTER leaded us to the point where mutant protein lost much of activity in vivo. Overexpressed and purified mutant protein showed much reduced activity in vitro: $2\%$ activity relative to that of wild type protein. This fact suggests that this amino acid interact with RNA close to meth­ylatable adenine to locate it at an active site properly.

Evolving IC's Role in End User Computing (최종 사용자 전산에서 정보센터의 역할)

  • Lee, Seong-Yeol;Gang, Sin-Cheol
    • Asia pacific journal of information systems
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    • v.1 no.1
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    • pp.103-115
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    • 1991
  • End-User Computing (EUC) is one of the most significant developments in corporate computing in the 1980's. An information center (IC) supports EUC by providing end-users with technical assistance and consulting services. This study investigates the effective management and implementation of an IC in an organization with respect to the three sociotechnical factors : characteristics of end-users, social relationships with the DP/MIS department, and 3) technological infrastructure of EUC. An exploratory framework for managing IC is developed based on extensive literature review and results from interviews with IC directors of 17 large companies in the midwestern region in U.S.A.

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Flow structure of wake behind a finite circular cylinder (자유단이 있는 원주의 후류 유동특성에 관한 실험적 연구)

  • Lee, Sang-Jun;Jeong,Yong-Sam
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.20 no.6
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    • pp.2014-2022
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    • 1996
  • Flow characteristics of the wake behind a finite circular cylinder(FC) mounted on a flat plate was experimentally investigated. Three finite cylinder models having aspect ratio (length to diameter ratio, L/D) of 6,10 and 13 were tested in this study. Wake velocity was measured by a hot-wire anemometry at Reynolds number of 20,000, and the results were compared with those of two-dimensional circular cylinder. As a result, the free-end effect on the wake structure becomes more dominant with decreasing the aspect ratio(L/D) of the finite cylinder. Invisid flow entrained into the wake region decreases the turbulence intensity and periodicity of the vortex shedding due to existence of the free end. From spectral analysis and cross correlation of the velocity signals, vortices having 24Hz frequency characteristics are found in the down wash flow just behind the free end. There exists very complicated flow near the free end due to interaction between the entrained flow and streamwise vortices. Vortex formation region is destroyed significantly in the near wake and shows quite different wake structures from those of 2-D cylinder.

Mechanical Unbalance Characteristics Analysis of Linear Motor for Magrntically Levitated Transit (자기 부상 열차용 리니어 모터의 기계적 부펑식 생성 효과)

  • 임달호;이민명;김규탁
    • The Transactions of the Korean Institute of Electrical Engineers
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    • v.40 no.5
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    • pp.470-478
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    • 1991
  • In this study, a variety of characteristics were shown experimentally under mechanically unbalnced states expected in a practicl system that linear motor is used as a driving motor of magneticlly levitated transit and the design criterion of the linear motor has been proposed. Since, with slip being at 0.1, end effect was reduced a little to increase thrust about 6.14 percents in case thatsinusoidal current conducted 5[A] in short coil at each end of linear motor for compensation of it, if the ratio of sinusoidl current versus input currents is adjusted properly, it is thought that this method small be effective one. And if the gap of exit region is bigger than that of entry region, end effect will be reduced. As a result, more effective driving will be obtained.

Eddy current loss calculation of flux shield in the large turbo generator using axi-periodic analysis (Axi-periodic Analysis를 이용한 대형 터보 발전기 단부 Flux Shield의 Eddy Current Loss 산정)

  • Kwon, Soon-O;Lee, Jung-Jong;Hong, Jung-Pyo;Nam, Hyuk
    • Proceedings of the KIEE Conference
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    • 2005.07b
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    • pp.987-989
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    • 2005
  • Axi-periodic analysis using magnetic vector potential is formulated in time harmonic field and applied to the field analysis for the end region of large turbo generator in this paper. By using axi-periodic analysis, the effect of flux shield, one of the structure placed in the end region of large turbo generator to prevent stator end from thermal damage, is studied, and eddy current loss in the flux shield is estimated for operation conditions. 3D FEA is used for the verification of presented analysis method. Because 3D flux distribution can be calculated with 2D modeling, magnetic field showing 3D distribution can be effectively calculated by axi-periodic analysis comparing with 3D FEA.

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