• Title/Summary/Keyword: diversity analysis

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Hybrid Diversity-Beamforming Technique for Outage Probability Minimization in Spatially Correlated Channels

  • Kwon, Ho-Joong;Lee, Byeong-Gi
    • Journal of Communications and Networks
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    • v.9 no.3
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    • pp.274-281
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    • 2007
  • In this paper, we present a hybrid multi-antenna technique that can minimize the outage probability by combining the diversity and beamforming techniques. The hybrid technique clusters the transmission antennas into multiple groups and exploit diversity among different groups and beamforming within each group. We analyze the performance of the resulting hybrid technique for an arbitrary correlation among the transmission antennas. Through the performance analysis, we derive a closed-form expression of the outage probability for the hybrid technique. This enables to optimize the antenna grouping for the given spatial correlation. We show through numerical results that the hybrid technique can balance the trade-offs between diversity and beamforming according to the spatial correlation and that the optimally designed hybrid technique yields a much lower outage probability than the diversity or beamforming technique does in partially correlated fading channels.

Performance Analysis of Transmit Diversity in Multiuser Data Networks With Fading Correlation

  • Zhang, Kai;Niu, Zhisheng
    • Journal of Communications and Networks
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    • v.10 no.4
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    • pp.444-450
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    • 2008
  • This paper studies the performance of multiuser data networks with transmit diversity under correlated fading channels. Previous work shows that correlated fading reduces the link performance of multiple antenna systems, but how correlated fading affects the throughput of multiuser data networks is still unknown since the throughput depends not only on the link performance but also on the multiuser diversity. We derive the throughput of the multiuser data networks with various transmit diversity schemes under correlated fading channels. The impact of correlated fading on the throughput is investigated. Analytical and simulation results show that, although correlated fading is harmful for link performance, it increases the throughput of the multiuser data networks if the transmit scheme is appropriately selected.

Social Diversity Analysis of Rural Areas with Statistical Data - A Case Study of Gyeongsangnam Province - (통계자료를 이용한 농촌 지역의 사회적 다양성 분석 - 경상남도를 대상으로 -)

  • Lee, Jimin
    • Journal of Korean Society of Rural Planning
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    • v.28 no.3
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    • pp.73-82
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    • 2022
  • Recently, social conflicts have intensified, and a diverse society is to the fore as a solution to social problems. In rural areas, the transition to a diverse society progressed due to population outflow, changes in the agricultural labor force, and an increase in multicultural families. In this study, regional social diversity in Gyeongsangnam province was measured using the neighborhood diversity index and the Simpson index. In addition, the relationship with the regional economy at the county level and township level was analyzed. As a result, it was found that the Gun regions have higher social diversity than the Si regions. and the city area showed a larger index value for residential segregation.

Effect of Population Reduction on mtDNA Diversity and Demographic History of Korean Cattle Populations

  • Dadi, Hailu;Lee, Seung-Hwan;Jung, Kyoung-Sup;Choi, Jae-Won;Ko, Moon-Suck;Han, Young-Joon;Kim, Jong-Joo;Kim, Kwan-Suk
    • Asian-Australasian Journal of Animal Sciences
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    • v.25 no.9
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    • pp.1223-1228
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    • 2012
  • The population sizes of three Korean indigenous cattle populations have been drastically reduced over the past decades. In this study, we examined the extent to which reduction in populations influenced genetic diversity, population structure and demographic history using complete mitochondrial DNA (mtDNA) control region sequences. The complete mtDNA control region was sequenced in 56 individuals from Korean Black (KB), Jeju Black (JEB) and Korean Brindle (BRI) cattle populations. We included 27 mtDNA sequences of Korean Brown (BRO) from the GenBank database. Haplotype diversity estimate for the total population was high (0.870) while nucleotide diversity was low (0.004). The KB showed considerably low nucleotide (${\pi}$ = 0.001) and haplotype (h = 0.368) diversities. Analysis of molecular variance revealed a low level of genetic differentiation but this was highly significant (p<0.001) among the cattle populations. Of the total genetic diversity, 7.6% was attributable to among cattle populations diversity and the rest (92.4%) to differences within populations. The mismatch distribution analysis and neutrality tests revealed that KB population was in genetic equilibrium or decline. Indeed, unless an appropriate breeding management practice is developed, inbreeding and genetic drift will further impoverish genetic diversity of these cattle populations. Rational breed development and conservation strategy is needed to safeguard these cattle population.

Microbial Diversity in the Soil Damaged by a Forest Fire (훼손된 산불토양의 미생물다양성)

  • Jung, Young-Ryul;Song, In-Geun;Kim, Jin-Yong;Lee, Sin-Geun;Kim, Young-Jun
    • Journal of the Korea Organic Resources Recycling Association
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    • v.13 no.2
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    • pp.85-90
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    • 2005
  • Changes of biochemical and genetic diversity of microbial communities in the soil damaged by a forest fire were analyzed. Soil samples were collected from Gangnung area where a forest fire was broken out in 2000. Two soil samples were from the burnt area, one from the naturally restoring soil (NS) and the other from the artificially restoring soil (AS). A normal, unaffected soil sample (US) was also included as a control. For the biochemical diversity, each sample was directly applied to the BIOLOG system, and the cluster analysis through a statistic process (SPSS) were performed. Genetic diversity was analyzed through DGGE using 16S-rDNA amplified from soil DNA. Among the samples tested, top soils of US and NS, and sub soil of NS revealed more than 70% of the similarity value in biochemical diversity. In case of genetic diversity, however, the similarity value was found to be in the range of 53% to 68% in all samples. This result indicates that the biochemical diversity is not always correlated with the genetic diversity in the analysis of microbial communities.

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A double-labeling marker-based method for estimating inbreeding and parental genomic components in a population under conservation

  • Li, Wenting;Zhang, Mengmeng;Wang, Kejun;Lu, Yunfeng;Tang, Hui;Wu, Keliang
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.1
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    • pp.12-23
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    • 2020
  • Objective: The objective of a conservation program is to maintain maximum genetic diversity and preserve the viability of a breed. However, the efficiency of a program is influenced by the ability to accurately measure and predict genetic diversity. Methods: To examine this question, we conducted a simulation in which common measures (i.e. heterozygosity) and novel measures (identity-by-descent probabilities and parental genomic components) were used to estimate genetic diversity within a conserved population using double-labeled single nucleotide polymorphism markers. Results: The results showed that the accuracy and sensitivity of identity-by-state probabilities and heterozygosity were close to identity by descent (IBD) probabilities, which reflect the true genetic diversity. Expected heterozygosity most closely aligned with IBD. All common measures suggested that practices used in the current Chinese pig conservation program result in a ~5% loss in genetic diversity every 10 generations. Parental genomic components were also analyzed to monitor real-time changes in genomic components for each male and female ancestor. The analysis showed that ~7.5% of male families and ~30% of female families were lost every 5 generations. After 50 generations of simulated conservation, 4 male families lost ~50% of their initial genomic components, and the genomic components for 24.8% of the female families were lost entirely. Conclusion: In summary, compared with the true genetic diversity value obtained using double-labeled markers, expected heterozygosity appears to be the optimal indicator. Parental genomic components analysis provides a more detailed picture of genetic diversity and can be used to guide conservation management practices.

Analysis of Bird Species Diversity Response to Structural Conditions of Urban Park - Focused on 26 Urban Parks in Cheonan City - (도시공원 구조 및 식생 조건에 따른 조류 종다양성 분석 - 천안시 26개 도시공원을 대상으로 -)

  • Song, Wonkyong
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.18 no.3
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    • pp.65-77
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    • 2015
  • The urban park has important functions as a habitat for wildlife as well as open space of rest and community for people. This study was carried out to find what factors of structure and vegetation of urban parks could affect forest bird species diversity in Cheonan city. The study surveyed bird and vegetation species in 26 urban parks, Cheonan city. A correlation analysis and multiple linear regressions were performed to test whether habitat structure and vegetation were the major correlate with species diversity. The results showed the Dujeong park was the most high bird species diversity (H' = 2.13), and the Dujeong-8 park (H' = 2.02) and the Cheongsa park (H' = 1.73) were considerably higher than the other urban parks. The variables that were strongly correlated with bird species diversity were park area, number of subtree species, canopy of shrub, number of shrub species, shape index, canopy of subtree, canopy of tree, and impervious surface ratio. The regression of bird species diversity against the environmental variables showed that 3 variables of park area, canopy of subtree, and canopy of tree were included in the best model. Model variable selection was broadly similar for the 5 optimal models. It means park area and multi-layer vegetation were the most consistent and significant predictor of bird species diversity, because urban parks were isolated by built-up areas. Especially the subtree coverage that provides shelter and food for forest birds was an important variable. Therefore, to make parks circular-shaped and abundant multi-layer vegetation, which could be a buffer to external disturbances and improve the quality of habitats, may be used to enhance species diversity in creation and management of urban parks.

Metagenomic Analysis of Antarctic Penguins Gut Microbial Dynamics by using Fecal DNA of Adélie (Pygoscelis adeliae) and Emperor (Aptenodytes forsteri) Penguins in Ross Sea, Antarctica (남극 로스해 지역의 아델리펭귄과 황제펭귄 분변 유전자를 활용한 남극 펭귄 장내 미생물의 메타지놈 분석)

  • Soyun Choi;Seung Jae Lee;Minjoo Cho;Eunkyung Choi;Jinmu Kim;Jeong-Hoon Kim;Hyun-Woo Kim;Hyun Park
    • Journal of Marine Life Science
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    • v.8 no.1
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    • pp.43-49
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    • 2023
  • This study applied a metagenomic analysis of the penguins' gut microbiome from fecal samples of Adélie Penguin (Pygoscelis adeliae) and Emperor Penguin (Aptenodytes forsteri) living along the Ross Sea, Antarctica. As a result of taxonomic analysis, 7 phyla and 18 families were mainly present in the gut microbiome of Adélie and Emperor penguins. To assess microbial diversity, we performed alpha diversity and OTU abundance analyses. It was confirmed that the Adélie Penguin's gut microbial species had a higher diversity than Emperor Penguin's. Based on the Beta diversity analysis using PCoA, differences were observed in the clustering between Adélie and Emperor penguins, respectively. Through the KEGG pathway analysis using PICRUSt, the nucleoside and nucleotide biosynthesis pathway was the most prevalent in Adélie and Emperor penguins. This study enabled a comparison and analysis of the composition and diversity of the gut microbiome in Adélie and Emperor Penguins. It could be utilized for future research related to penguin feeding habits and could serve as a foundation for analyzing the gut microbiomes of various other Antarctic organisms.

Genetic Diversity and Differentiation of Colletotrichum spp. Isolates Associated with Leguminosae Using Multigene Loci, RAPD and ISSR

  • Mahmodi, Farshid;Kadir, J.B.;Puteh, A.;Pourdad, S.S.;Nasehi, A.;Soleimani, N.
    • The Plant Pathology Journal
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    • v.30 no.1
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    • pp.10-24
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    • 2014
  • Genetic diversity and differentiation of 50 Colletotrichum spp. isolates from legume crops studied through multigene loci, RAPD and ISSR analysis. DNA sequence comparisons by six genes (ITS, ACT, Tub2, CHS-1, GAPDH, and HIS3) verified species identity of C. truncatum, C. dematium and C. gloeosporiodes and identity C. capsici as a synonym of C. truncatum. Based on the matrix distance analysis of multigene sequences, the Colletotrichum species showed diverse degrees of intera and interspecific divergence (0.0 to 1.4%) and (15.5-19.9), respectively. A multilocus molecular phylogenetic analysis clustered Colletotrichum spp. isolates into 3 well-defined clades, representing three distinct species; C. truncatum, C. dematium and C. gloeosporioides. The ISSR and RAPD and cluster analysis exhibited a high degree of variability among different isolates and permitted the grouping of isolates of Colletotrichum spp. into three distinct clusters. Distinct populations of Colletotrichum spp. isolates were genetically in accordance with host specificity and inconsistent with geographical origins. The large population of C. truncatum showed greater amounts of genetic diversity than smaller populations of C. dematium and C. gloeosporioides species. Results of ISSR and RAPD markers were congruent, but the effective maker ratio and the number of private alleles were greater in ISSR markers.

Bacterial diversity in children's dental caries (소아의 치아 우식 부위별 세균 다양성)

  • Kim, Eun-Mi;Baik, Keun-Sik;Ha, Myung-Ok
    • Journal of Korean society of Dental Hygiene
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    • v.13 no.5
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    • pp.889-900
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    • 2013
  • Objectives : Molecular biology techniques were employed to assess diversity of bacterial in children's dental caries. Methods : DNA of germs was extracted and the diversity of the 16S rRNA clones was analyzed by amplified rDNA restriction analysis and sequencing. The experimental samples were pit and fissure caries (PC), deep dentinal caries (DC), smooth surface caries (SC), and supragingival plaque (PQ) from 50 children of age less than 12 years old. The control group was healthy teeth supragingival plaque (HT). Thirty clones from each 16S rRNA clone library of 5 samples were randomly selected, thus a total of 150 clones were analyzed. Results : Amplified rDNA restriction analysis uncovered 18, 20, 11, 17, and 22 phylotypes from healthy teeth, pit and fissure caries, deep dentinal caries, smooth surface caries, and supragingival plaque, respectively. Sequencing analysis found the dominance of Actinomycs naeslundii and Fusobacterium nucleatum in the healthy teeth; Leptotrichia sp. in the pit and fissure caries; Actinomyces sp., Streptococcus mutans, and Rahnella aquatilis in the deep dentinal caries; Streptococcus mutans and Actinomyces sp. in the smooth surface caries; Enterobacter hormaechei and Streptococcus sanguinis in the supragingival plaque. Conclusions : Clonal analysis identified 6 phyla, 20 genera, and 51 species.