• Title/Summary/Keyword: crop mapping

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Mapping of QTL based on molecular map conferring agronomic traits in recombinant inbred lines from tongil type X Japonica type of rice(Oryza sativa L.) IV. White core, white belly and alkali digestion value (벼의 통일형과 일반형 교배후대에서 분자유전자 지도를 이용한 주요 농업형질의 양적형질 유전자좌(QTL) 분석 IV. 심백, 복백 및 알칼리 붕괴도)

  • Kang Hyeon Jung;Cho Yong Gu;Lee Young Tae;Eun Moo Young;Cho Soo Yeon;Shim Jai Wook
    • Proceedings of the Korean Society of Crop Science Conference
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    • 1996.10a
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    • pp.30-31
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    • 1996
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Mapping of QTL based on molecular map conferring agronomic traits in recombinant inbred lines from tonsil type X Japonica type of rice(Oryza sativa L.) II. Yield and yield components (벼의 통일형과 일반형 교배후대에서 분자유전자 지도를 이용한 주요 농업형질의 양적형질 유전자좌(QTL) 분석 II. 수량 및 수량구성요소)

  • Kang Hyeon Jung;Cho Yong Gu;Lee Young Tae;Lee Seung Yeob;Eun Moo Young;Shim Jai Wook
    • Proceedings of the Korean Society of Crop Science Conference
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    • 1996.10a
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    • pp.26-27
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    • 1996
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Mapping Within-field Variability Using Airborne Imaging Systems: A Case Study from Missouri Precision Agriculture

  • Hong, S.Y.;Sudduth, K.A.;Kitchen, N.R.;Palm, H.L.;Wiebold, W.J.
    • Proceedings of the KSRS Conference
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    • 2003.11a
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    • pp.1049-1051
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    • 2003
  • This study investigated the use of airborne image data to provide estimates of within -field variability in soil properties and crop growth as an alternative to extensive field data collection. Hyperspectral and multispectral images were acquired in 2000, 2001, and 2002 for central Missouri experimental fields. Data were converted to reflectance using chemically-treated reference tarps with known reflectance levels. Geometric distortion of the hyperspectral pushbroom sensor images was corrected with a rubber sheeting transformation. Statistical analyses were used to relate image data to field-measured soil properties and crop characteristics. Results showed that this approach has potential; however, it is important to address a number of implementation issues to insure quality data and accurate interpretations.

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Genotypic Variations in ${\beta}-glucan$ Content of Barley Cultivated in Different Regions

  • Kim Hong-Sik;Park Kwang-Geun;Baek Seong-Bum;Nam Jung-Hyun
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.51 no.4
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    • pp.335-339
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    • 2006
  • The level of ${\beta}-glucan$ which is a major soluble dietary fiber found in the grain endosperm cell wall was highly variable among 25 barley genotypes grown at four locations including Suwon, Naju, Jinju, and Jeju. Statistically significant genotypic effects were observed for ${\beta}-glucan$ content at each or across growing sites (P<0.001). On average, 'Chalssalbori' showed the lowest percentage ${\beta}-glucan$ (4.04%) among genotypes in the grain, whereas 'Yonezawa Mochi' was highest in percentage ${\beta}-glucan$ (6.46%) compared to other genotypes. The significant difference between genotypes was approximately 1-2% across environments. The effects of location or interaction between locations and genotypes were not significant on the variation of ${\beta}-glucan$ contents. High ${\beta}-glucan$ content seemed to be greatly associated with such grain traits as waxiness and presence of husk except for 'Chalssalbori'. The waxy genotypes had a mean of 5.37% and values ranging from 5.28 to 5.47%, but normal genotypes had a mean of 4.78% and values ranging from 4.69 to 4.88% over environments. Hulless barley genotypes were also higher than hulled barley genotypes for the average ${\beta}-glucan$ content in both individual and over all environments. The difference between the hulled and hulless gene pools was on average of 0.37% with ranges from 0.19% to 0.56% at four environments. ${\beta}-glucan$ content measured from a mapping population of $F_5$-derived 107 lines derived from the cross between 'Yonezawa Mochi' and 'Neulssalbori' was not significantly associated with other agronomic traits except for 1,000-kernel weight at the '01 Suwon environment. Not too much information on the relationship of ${\beta}-glucan$ content to agronomic traits was available.

Genetic diversity of chili pepper (Capsicum spp.) germplasm resources in Vietnam

  • Kenta, Komori;Trung, Quoc;Minh, Nguyen;Cuong, Cuong;Sakagami, Jun-Ich
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.99-99
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    • 2017
  • Chili pepper (Capsicum annum) is origin of subtropical region, and has been spread all over the world. It is increasing the production and consumption in recent year. Chili peppers are readily incorporated into local South Asian cuisines perhaps because people are already familiar with pungent and spicy flavors. Chili peppers, despite their fiery "hotness", are one of very popular spices known for their medicinal and health benefiting properties. Especially in South East Asia, they grow up so many cultivars of them recently, so it is so important crop world wide. In South East Asia, there are some articles about chili pepper in Thailand and Indonesia, but in Vietnam there is not so much information about chili pepper. In this paper, we analyzed genetic diversity in Vietnamese Chili pepper through the survey of local chili pepper. As a result, we got 38 kinds of chili fruits, 26 kinds of leaves and some information from farmers all in Vietnam. And I made the phylogenetic tree by SSR with 10 DNA markers. Finally we found the genetic similarities by regions.

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Construction of Molecular Genetic Linkage Map Using RAPD Markes in Cowpea

  • Chung, Jong-Il;Shim, Jung-Hyun;Go, Mi-Suk
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.46 no.4
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    • pp.341-343
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    • 2001
  • Molecular markers have become fundamental tools for crop genome study. The objective of this study was to construct a genetic linkage map for cowpea with PCR-based molecular markers. Five hundred and twenty random RAPD primers were screened for parental polymorphism. Ninety RAPD markers from sixty primers was segregated in 75 F2 mapping population derived from the cross of local cultivars GSC01 and GSC02. 70 RAPD markers were found to be genetically linked and formed 11 linkage groups. Linkage map spanned 474.1 cM across all 11 linkage groups. There are six linkage groups of 40 cM or more, and five smaller linkage groups range from 4.9 to 24.8 cM. The average linkage distance between pairs of markers among all linkage groups was 6.87 cM. The number of markers per linkage group ranged from 2 to 32. The longest group 1 spans 190.6 cM, while the length of shortest group 11 is 4.9 cM. This map is further needed to be saturated with the various markers such as RFLP, AFLP, SSR and more various populations and primers. In addition, morphological markers and biochemical markers should be united to construct a comprehensive linkage map.

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SSR Marker Linked to f Locus in Soybean

  • Nam, Ki-Chul;Kim, Myung-Sik;Jeong, Woo-Hyeun;Kim, Seok-Hyeon;Chung, Jong-Il
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.52 no.1
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    • pp.51-54
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    • 2007
  • Soybean has a morphological type with a broadened and flattened stem. Fasciation has been suggested as a new gene for soybean research. SSR marker linked to the $\Large f$ locus that controls fasciation phenotype has not identified within 10 cM. A mapping population consisting of 94 $F_2$ progenies was derived from a cross between wild type Clark (FF) and fasciation mutant C32 (${\Large f}{\Large f}$). The phenotype of $F_2$ individual plants was recorded at R2 and R3 growth stage from field. One-thousand 10-mer oligonucleotide RAPD primers and 29 SSR primers selected from the D1b+W of the soybean molecular linkage map were used. A genetic map was constructed from the segregating 35 RAPD, four SSR markers and one phenotypic(wild type/fasciation) marker. The segregation ratios of 3 : 1 observed in the $F_2$ population and the Chi-square values strongly suggest that the fasciation trait is controlled by a single recessive gene. Satt537 marker was linked to $\Large f$ locus at a distance of 9.6 cM. Assignment of the $\Large f$ locus to linkage group D1b+W and identification of markers can be used as an initial step for fine mapping of the $\Large f$ gene.

Quantitative Trait Locus Mapping and Candidate Gene Analysis for Plant Architecture Traits Using Whole Genome Re-Sequencing in Rice

  • Lim, Jung-Hyun;Yang, Hyun-Jung;Jung, Ki-Hong;Yoo, Soo-Cheul;Paek, Nam-Chon
    • Molecules and Cells
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    • v.37 no.2
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    • pp.149-160
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    • 2014
  • Plant breeders have focused on improving plant architecture as an effective means to increase crop yield. Here, we identify the main-effect quantitative trait loci (QTLs) for plant shape-related traits in rice (Oryza sativa) and find candidate genes by applying whole genome re-sequencing of two parental cultivars using next-generation sequencing. To identify QTLs influencing plant shape, we analyzed six traits: plant height, tiller number, panicle diameter, panicle length, flag leaf length, and flag leaf width. We performed QTL analysis with 178 $F_7$ recombinant inbred lines (RILs) from a cross of japonica rice line 'SNU-SG1' and indica rice line 'Milyang23'. Using 131 molecular markers, including 28 insertion/deletion markers, we identified 11 main- and 16 minor-effect QTLs for the six traits with a threshold LOD value > 2.8. Our sequence analysis identified fifty-four candidate genes for the main-effect QTLs. By further comparison of coding sequences and meta-expression profiles between japonica and indica rice varieties, we finally chose 15 strong candidate genes for the 11 main-effect QTLs. Our study shows that the whole-genome sequence data substantially enhanced the efficiency of polymorphic marker development for QTL fine-mapping and the identification of possible candidate genes. This yields useful genetic resources for breeding high-yielding rice cultivars with improved plant architecture.