• Title/Summary/Keyword: chemical binding

Search Result 1,354, Processing Time 0.028 seconds

The Electronic Structure of Interaction Platinum(Ⅱ) with DNA bases, Adenine, Guanine, and Cytosine (Platinum(Ⅱ) Complex와 DNA bases인 Adenine, Guanine 그리고 Cytosine의 Interaction에 대한 전자구조)

  • Kim, Ui Rak;Kim, Sang Hae;Edward A. Boudreaux
    • Journal of the Korean Chemical Society
    • /
    • v.34 no.6
    • /
    • pp.539-547
    • /
    • 1990
  • Molecular Orbital calculations using the SC-MEH method have been carried out for the interaction of Adenine, Guanine and Cytosine as DNA base and diaminecytosineplatinum(DCP) in various conformations. The results showed that the order of DCP binding to the DNA bases was guanine > adenine > cytosine and the stabilization energy of cis-isomer was larger than that of trans-isomer in the adenine-DCP complexes system. Furthermore, platinum(II) binding to DNA bases markedly gives rise to change of atomic charge in DNA bases ring, which can explain anti-tumor activity of platinum complex.

  • PDF

Thermodynamic Studies on the Interaction of Copper Ions with Carbonic Anhydrase

  • Sarraf, N.S.;Mamaghani-Rad, S.;Karbassi, F.;Saboury, A. A.
    • Bulletin of the Korean Chemical Society
    • /
    • v.26 no.7
    • /
    • pp.1051-1056
    • /
    • 2005
  • The interaction of bovine carbonic anhydrase II with copper ions was studied by isothermal titration microcalorimetry, circular dichroism, UV spectrophotometry and temperature scanning spectrophotometry methods at 27 ${^{\circ}C}$ in Tris buffer solution at pH = 7.5. It was indicated that there are three non-identical different binding sites on carbonic anhydrase for $Cu^{2+}$. The binding of copper ions is exothermic and can induce some minor changes in the secondary and tertiary structure of the enzyme, which does not unfold it, but can result in a decrease in both activity and stability of the enzyme.

Determination of Bovine Serum Albumin by Its Enhancement Effect of Nile Blue Fluorescence

  • Lee, Sang-Hak;Suh, Jung-Kee;Li, Ming
    • Bulletin of the Korean Chemical Society
    • /
    • v.24 no.1
    • /
    • pp.45-48
    • /
    • 2003
  • A novel fluorimetric method has been developed for the determination of microgram quantities of bovine serum albumin (BSA) based on its enhancement effect of Nile Blue fluorescence at 670 nm, caused by binding of Nile Blue to BSA to produce a stable water soluble complex. The binding constant of micromole Nile Blue-BSA complex was estimated by Scatchard plot method. Under the optimal conditions, the increased fluorescence intensity was linearly related to BSA concentration in the range of 0.5-12.0 ㎍/mL. The detection limit was 0.2 ㎍/mL, and the relative standard deviation of six replicate measurements was 1.4% for 10.0 ㎍/mL BSA. There was little interference from amino acids, sugars and most of metal ions.

Molecular Recognition of Neutral Substrates by New Tetraaminocalix[4]arene Derivative

  • Nimse, Satish Balasaheb;Song, Keum-Soo;Jung, Chan-Yong;Eoum, Woon-Yong;Kim, Tai-Sun
    • Bulletin of the Korean Chemical Society
    • /
    • v.30 no.6
    • /
    • pp.1247-1251
    • /
    • 2009
  • The recognition of neutral aromatic substrates by different neutral calix[4]arene receptors 1, 2, and 3 was studied by NMR spectroscopy. The stoichiometry is 1:1 in all cases as was confirmed by jobs plot. Owing to the deep cavity, 1 affords stronger binding abilities for substrate 4 and 5, while all receptors remained inert for substrates 6 and 7. The binding constants determined by $^1H$ NMR titration show that the recognition of substrate 4 by 1 gives strongest complexation ($K_a\;of\;9.8\;{\times}\;102\;M^{-1}$).

Electrochemical and Spectroscopic Studies on the Interaction between DNA and the Product of Enzyme-catalyzed Reaction of OPD-H2O2-HRP

  • Niu, S.Y.;Zhang, S.S.;Ma, L.B.;Jiao, K.
    • Bulletin of the Korean Chemical Society
    • /
    • v.25 no.6
    • /
    • pp.829-832
    • /
    • 2004
  • The pure product of 2,3-diaminophenazine was prepared by the enzyme-catalyzed reaction of ophenylenediamine-$H_2O_2$-horseradish peroxidase and characterized by UV/Vis spectroscopy, IR spectroscopy and NMR spectroscopy. The electrochemical behaviour of 2,3-diaminophenazine on the glassy carbon electrode was studied. The interaction between 2,3-diaminophenazine and deoxyribonucleic acid was studied by cyclic voltammetry method and UV/Vis spectroscopy, which indicated that the interaction between them is intercalation. The influence of reacting time was also studied. The binding ratio of the 2,3-diaminophenazine-DNA complex is calculated to be 1 : 2 and the binding constant is to be $5.07{\times} 10^3L{\cdot}mol^{-1}$ at room temperature.

Genetic Incorporation of a Phenanthroline-Containing Amino Acid in Escherichia coli

  • Jin, Sunhwa;Lee, Hui-Jung;Lee, Sangyeul;Lee, Hyun Soo
    • Bulletin of the Korean Chemical Society
    • /
    • v.35 no.4
    • /
    • pp.1087-1090
    • /
    • 2014
  • A simple and general method that selectively introduces metal binding sites into a protein can greatly increase the ability to design and biosynthesize artificial metalloproteins. Here, we report the incorporation of a phenanthroline-containing amino acid (Phen-Ala) into proteins in Escherichia coli by using the $tRNA{^{Tyr}}_{CUA}$ and tyrosyl aminoacyl-tRNA synthetase pair (BpyRS) from Methanococcus jannaschii, which was originally developed for a bipyridine-containing amino acid (Bpy-Ala). The incorporation efficiency of BpyRS for Phen-Ala was comparable to that for Bpy-Ala. Because of its high metal-binding ability and characteristic spectral properties, Phen-Ala can be a useful alternative to the existing metal-chelating amino acids for the design and synthesis of artificial metalloproteins.

Ab Initio Calculated Structures and Vibrational Spectra of 1,3-Diethoxy-p-tert-butylcalix[4]crown-5-ether Complexed with Potassium Cation

  • Choe, Jong-In
    • Bulletin of the Korean Chemical Society
    • /
    • v.28 no.2
    • /
    • pp.235-240
    • /
    • 2007
  • Molecular structures were optimized for the 1,3-diethoxycalix[4]crown-5-ether (2) in the various isomers and their potassium-ion complexes by using B3LYP/6-31+G(d,p)//B1LYP/6-31G(d,p) method after ab initio RHF/6-31G calculation. The cone-shaped isomer of 2 with cr-binding mode has shown the strongest binding efficiency among the six different complexes attributed to seven electrostatic interactions between the potassium cation and the oxygen atoms of crown-5-ether and ethoxy groups of the host (2). The vibrational spectra of 2 and its K+-complexes were obtained by restricted Hartree-Fock (RHF) calculations with the 6-31G basis set. The characteristic vibrational frequencies of various C-O-C stretching and bending motions are analyzed.