• Title/Summary/Keyword: cell dimension

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Dimension Reduction in Time-series Gene Expression Data using incremental PCA (점진적 주성분 분석을 이용한 시계열 유전자 발현 데이터의 효율적인 차원 축소)

  • Kim, Sun-Hee;Kim, Man-Sun;Yang, Hyung-Jeong
    • Proceedings of the Korea Information Processing Society Conference
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    • 2007.11a
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    • pp.733-736
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    • 2007
  • 최근 생명 공학 기술의 발달로 마이크로 단위의 실험이 가능해지고 하나의 칩상에 수 만개의 유전자들의 발현 양상을 보다 쉽게 관찰할 수 있게 되었다. DNA 칩 기술에 의해 얻어지는 마이크로어레이(microarray) 데이터는 세포나 조직 내의 유전자 발현도(expression level)를 측정한 것으로 질병 진단이나 유전자 기능 예측 등에 이용되고 있다. 본 논문에서는 대량의 시계열 마이크로어레이 데이터 분석을 위해 효율적으로 데이터의 차원을 판단하는 점진적 주성분 분석을 이용하여 데이터의 차원을 축소 한다. 제안된 방법은 실제 시계열 마이크로어레이 데이터인 yeast cell cycle 데이터에 적용되었고, 데이터 차원 축소에 대한 효율성을 검증하기 위해 클러스터링을 수행하였다. 그 결과 데이터를 축소하여 클러스터링을 수행한 경우 학습 성능이 향상 된 결과를 보였다.

Patients with High Risk Breast Cancer (고위험군 유방암 환자의 치료과정에 따른 삶의 질의 변화)

  • Park, Eun-Young;Lee, Eun-Ok
    • Asian Oncology Nursing
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    • v.1 no.1
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    • pp.32-43
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    • 2001
  • High risk breast cancer patients receive aggressive treatments such as APBSCT in order to prevent the recurrence. These treatments take a long time and decrease the quality of life of patients as a result. The purpose of this study is to examine when the changes of quality of life are dramatic in general and in specific dimension. This is a time series study of two types of treatment groups, in which 15 patients were treated by chemotherapy only and nine patients by auto-peripheral blood stem cell transplantation. Subjects were in this study were stage III and above of breast cancer. Data were collected from April 1999 to April 2000 with the 3 month-interval starting after 3rd cycle of chemotherapy. Data were collected 3 times ; treatment period, treatment finishing period and 3 months later after the treatment. Ferrell's QOL instrument was used which had been developed for the breast cancer patients in 1989. Repeated Measure ANOVA was used to examine differences of quality of life at 3 points of time respectively. As a result, average age was 43.29 years (4.38yrs) and the number of married person was 22(91.7%). Scores of quality of life were 5.45 at 1st period after 3rd cycle of chemotherapy, 5.17 after treatment, 5.10 at 3 months later after treatment and difference of quality of life was decreased according to period of treatment (P=.085). Only the psychological dimension of the quality of life showed the significant difference (P=.045). Two different treatment groups showed a difference of quality of life at 3 month later after treatment. In conclusions, high risk breast cancer patients showed the decreased quality of life related to treatment up to 3 months later of treatment. Subjects who received APBSCT returned to the normal quality of life more rapidly than those who received chemotherapy. Psychological nursing intervention was needed during the whole period of treatment.

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Transceiver Design Method for Finitely Large Numbers of Antenna Systems (유한 대용량 안테나 시스템에서 송수신기 설계 방법)

  • Shin, Joonwoo
    • Journal of Advanced Marine Engineering and Technology
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    • v.39 no.3
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    • pp.280-285
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    • 2015
  • We consider a linear transceiver design method for multi-user multiple-input multiple-output (MIMO) downlink channels where a base station (BS) equipped with a finitely large number of antennas. Although a matched-filter precoder is a capacity-achieving method in massive MIMO downlink systems, it cannot guarantee to achieve the multi-user MIMO capacity in a finitely large number of antennas due to inter-user interferences. In this paper, we propose a two-stage precoder design method that maximizes the sum-rate of cell-edge users when the BS equipped with a finitely large number of antennas. At the first stage, a matched-filter precoder is adopted to exploit both beamforming gain and the reduction of the dimension of effective channels. Then, we derive the second stage precoder that maximizes the sum-rate by minimizing the weighted mean square error (WMSE). From simulation and analysis, we verify the effectiveness of the proposed method.

Performance Analysis of Deep Learning Based Transmit Power Control Using SINR Information Feedback in NOMA Systems (NOMA 시스템에서 SINR 정보 피드백을 이용한 딥러닝 기반 송신 전력 제어의 성능 분석)

  • Kim, Donghyeon;Lee, In-Ho
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.25 no.5
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    • pp.685-690
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    • 2021
  • In this paper, we propose a deep learning-based transmit power control scheme to maximize the sum-rates while satisfying the minimum data-rate in downlink non-orthogonal multiple access (NOMA) systems. In downlink NOMA, we consider the co-channel interference that occurs from a base station other than the cell where the user is located, and the user feeds back the signal-to-interference plus noise power ratio (SINR) information instead of channel state information to reduce system feedback overhead. Therefore, the base station controls transmit power using only SINR information. The use of implicit SINR information has the advantage of decreasing the information dimension, but has disadvantage of reducing the data-rate. In this paper, we resolve this problem with deep learning-based training methods and show that the performance of training can be improved if the dimension of deep learning inputs is effectively reduced. Through simulation, we verify that the proposed deep learning-based power control scheme improves the sum-rate while satisfying the minimum data-rate.

A STUDY ON OSTEOBLAST-LIKE CELL RESPONSES TO SURFACE-MODIFIED TITANIUM

  • Hong Min-Ah;Kim Yung-Soo;Kim Chang-Whe;Jang Kyung-Su;Lee Jae-Il
    • The Journal of Korean Academy of Prosthodontics
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    • v.41 no.3
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    • pp.300-318
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    • 2003
  • Statement of problem: The success of implants depends on intimate and direct contact of implant material on bone tissue and on functional relationship with soft tissue contact. Creation and maintenance of osseointegration depend on the understanding of the tissue's healing, repairing, and remodeling capacity and these capacities rely on cellular behavior. Altering the surface properties can modify cellular responses such as cell adhesion, cell motility, bone deposition, Therefore, various implant surface treatment methods are being developed for the improved bone cell responses. Purpose: The purpose of this study was to evaluate the responses of osteoblast-like cells to surface-modified titanium. Materials and Methods: The experiment was composed of four groups. Group 1 represented the electropolished surface. Group 2 surfaces were machined surface. Group 3 and Group 4 were anodized surfaces. Group 3 had low roughness and Group 4 had high roughness. Physicochemical properties and microstructures of the discs were examined and the responses of osteoblast-like cells to the discs were investigated. The microtopography was observed by SEM. The roughness was measured by three-dimension roughness measuring system. The microstructure was analyzed by XRD, AES. To evaluate cell responses to modified titanium surfaces, osteoblasts isolated from calvaria of neonatal rat were cultured. Cell count, morphology, total protein measurement and alkaline phosphatase activities of the cultures were examined. Results and Conclusion: The results were as follows 1. The four groups showed specific microtopography respectively. Anodized group showed grain structure with micropores. 2. Surface roughness values were, from the lowest to the highest, electropolished group, machined group, low roughness anodized group, and high roughness anodized group. 3. Highly roughened anodized group was found to have increased surface oxide thickness and surface crystallinity. 4. The morphology of cells, flattened or spherical, were different from each other. In the electropolished group and machined group, the cells were almost flattened. In two anodized groups, some cells were spherical and other cells were flattened. And the 14 day culture cells of all of the groups were nearly flattened due to confluency. 5. The number of attached cells was highest in low roughness anodized group. And the machined group had significantly lower cell count than any other groups(P<.05). 6. Total protein contents showed no difference among groups. 7. The level of alkaline phosphatase activities was higher in the anodized groups than electropolished and machined groups(P<.05).

Charge Transport Characteristics of Dye-Sensitized TiO2 Nanorods with Different Aspect Ratios

  • Kim, Eun-Yi;Lee, Wan-In;Whang, Chin Myung
    • Bulletin of the Korean Chemical Society
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    • v.32 no.8
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    • pp.2671-2676
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    • 2011
  • Nanocrystalline $TiO_2$ spherical particle (NP) with a dimension of 5 ${\times}$ 5.5 nm and several nanorods (NR) with different aspect ratios (diameter ${\times}$ length: 5 ${\times}$ 8.5, 4 ${\times}$ 15, 4 ${\times}$ 18 and 3.5 ${\times}$ 22 nm) were selectively synthesized by a solvothermal process combined with non-hydrolytic sol-gel reaction. With varying the molar ratio of TTIP to oleic acid from 1:1 to 1:16, the NRs in the pure anatase phase were elongated to the c-axis direction. The prepared NP and NRs were applied for the formation of nanoporous $TiO_2$ layers in dye-sensitized solar cell (DSSC). Among them, NR2 ($TiO_2$ nanorod with 4 ${\times}$ 15 nm) exhibited the highest cell performance: Its photovoltaic conversion efficiency (${\eta}$) of 6.07%, with $J_{sc}$ of 13.473 mA/$cm^2$, $V_{oc}$ of 0.640 V, and FF of 70.32%, was 1.44 times that of NP with a size of 5 ${\times}$ 5.5 nm. It was observed from the transient photoelectron spectroscopy and the incident photon to current conversion efficiency (IPCE) spectra that the $TiO_2$ films derived from NR2 demonstrate the longest electron diffusion length ($L_e$) and the highest external quantum efficiency (EQE).

Research of Optimal MRAM Adding Pole for High Gb/Chip (고 Gb/Chip을 위한 Pole이 추가된 MRAM의 최적 설계에 관한 연구)

  • Kim, Dong-Sok;Won, Hyuk;Park, Gwan-Soo
    • Journal of the Korean Magnetics Society
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    • v.18 no.3
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    • pp.103-108
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    • 2008
  • Magnetoresistive random access memory (MRAM) don't get very public face on the field of non-volatile memory. Because recording capacity of MRAM is smaller than other non-volatile memory and structurally, magnetic efficiency of MRAM is very bad. We diminish a size of one cell in order to make MRAM of high recording capacity. But It don't make high recording field in general structures consisting of two current wire. Accordingly, We make a cell of small size is impossible. In this paper, we suggest new MRAM that it have two pole of high permeability on both ends of recording layer. Because magnetic efficiency of new MRAM is higher than exiting MRAM, it can make high recording field. And we can diminish the size of one cell due to recording layer of high coercivity. We used three-dimension finite element method to prove the reliability.

Capillary Flow in Different Cells of Thuja orientalis, Gmelina arborea, Phellodendron amurense

  • Chun, Su Kyoung
    • Journal of the Korea Furniture Society
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    • v.28 no.3
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    • pp.248-258
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    • 2017
  • A study was carried out to observe the 1% aqueous safranine solution flow speed in longitudinal and radial directions of softwood Thuja orientalis L., diffuse-porous wood Gmelina arborea Roxb., and ring-porous wood Phellodendron amurense Rupr., Longitudinal flow was considered from bottom to top while the radial flow was considered from bark to pith directions. In radial direction, ray cells and in longitudinal direction tracheids, vessel and wood fiber were considered for the measurement of liquid penetration speed at less than 12% moisture contents(MC). The variation of penetration speed for different species was observed and the reasons behind for this variation were explored. The highest radial penetration depth was found in ray parenchyma of T. orientalis but the lowest one was found in ray parenchyma of P. amurense. The average liquid penetration depth in longitudinal trachied of T. orientalis was found the highest among all the other cells. The penetration depth in fiber of G. arborea was found the lowest among the other longitudinal cells. It was found that cell dimension and also meniscus angle of safranine solution with cell walls were the prime factors for the variation of liquid flow speed in wood. Vessel was found to facilitate prime role in longitudinal penetration for hardwood species. The penetration depth in vessel of G. arborea was found highest among all vessels. Anatomical features like ray parenchyma cell length and diameter, end-wall pits number were found also responsible fluid flow differences. Initially liquid penetration speed was high and the nit gradually decreased in an uneven rate. Liquid flow was captured via video and the penetration depths in those cells were measured. It was found that even in presence of abundant rays in hardwood species, penetration depth of liquid in radial direction of softwood species was found high. Herein the ray length, lumen area, end wall pit diameter determined the radial permeability. On the other hand, vessel and fiber structure affected the longitudinal flow of liquids. Following a go-stop-go cycle, the penetration speed of a liquid decreased over time.

Effects of Culture Dimensions on Maintenance of Porcine Inner Cell Mass-Derived Cell Self-Renewal

  • Baek, Song;Han, Na Rae;Yun, Jung Im;Hwang, Jae Yeon;Kim, Minseok;Park, Choon Keun;Lee, Eunsong;Lee, Seung Tae
    • Molecules and Cells
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    • v.40 no.2
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    • pp.117-122
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    • 2017
  • Despite the fact that porcine embryonic stem cells (ESCs) are a practical study tool, in vitro long-term maintenance of these cells is difficult in a two-dimensional (2D) microenvironment using cellular niche or extracellular matrix proteins. However, a three-dimensional (3D) microenvironment, similar to that enclosing the inner cell mass of the blastocyst, may improve in vitro maintenance of self-renewal. Accordingly, as a first step toward constructing a 3D microenvironment optimized to maintain porcine ESC self-renewal, we investigated different culture dimensions for porcine ICM-derived cells to enhance the maintenance of self-renewal. Porcine ICM-derived cells were cultured in agarose-based 3D hydrogel with self-renewal-friendly mechanics and in 2D culture plates with or without feeder cells. Subsequently, the effects of the 3D microenvironment on maintenance of self-renewal were identified by analyzing colony formation and morphology, alkaline phosphatase (AP) activity, and transcriptional and translational regulation of self-renewal-related genes. The 3D microenvironment using a 1.5% (w/v) agarose-based 3D hydrogel resulted in significantly more colonies with stereoscopic morphology, significantly improved AP activity, and increased protein expression of self-renewal-related genes compared to those in the 2D microenvironment. These results demonstrate that self-renewal of porcine ICM-derived cells can be maintained more effectively in a 3D microenvironment than in a 2D microenvironment. These results will help develop novel culture systems for ICM-derived cells derived from diverse species, which will contribute to stimulating basic and applicable studies related to ESCs.

Declustering of High-dimensional Data by Cyclic Sliced Partitioning (주기적 편중 분할에 의한 다차원 데이터 디클러스터링)

  • Kim Hak-Cheol;Kim Tae-Wan;Li Ki-Joune
    • Journal of KIISE:Databases
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    • v.31 no.6
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    • pp.596-608
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    • 2004
  • A lot of work has been done to reduce disk access time in I/O intensive systems, which store and handle massive amount of data, by distributing data across multiple disks and accessing them in parallel. Most of the previous work has focused on an efficient mapping from a grid cell to a disk number on the assumption that data space is regular grid-like partitioned. Although we can achieve good performance for low-dimensional data by grid-like partitioning, its performance becomes degenerate as grows the dimension of data even with a good disk allocation scheme. This comes from the fact that they partition entire data space equally regardless of distribution ratio of data objects. Most of the data in high-dimensional space exist around the surface of space. For that reason, we propose a new declustering algorithm based on the partitioning scheme which partition data space from the surface. With an unbalanced partitioning scheme, several experimental results show that we can remarkably reduce the number of data blocks touched by a query as grows the dimension of data and a query size. In this paper, we propose disk allocation schemes based on the layout of the resultant data blocks after partitioning. To show the performance of the proposed algorithm, we have performed several experiments with different dimensional data and for a wide range of number of disks. Our proposed disk allocation method gives a performance within 10 additive disk accesses compared with strictly optimal allocation scheme. We compared our algorithm with Kronecker sequence based declustering algorithm, which is reported to be the best among the grid partition and mapping function based declustering algorithms. We can improve declustering performance up to 14 times as grows dimension of data.