• Title/Summary/Keyword: biological sample

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Design, Synthesis and Preliminary Biological Evaluation of a Biotin-S-S-Phosphine Reagent

  • Kang, Dong W.;Kim, Eun J.
    • Bulletin of the Korean Chemical Society
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    • v.35 no.2
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    • pp.383-391
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    • 2014
  • Biotin-S-S-Phosphine was designed and synthesized as a potential tool for a proteomic study of O-GlcNAcmodified proteins. This reagent features a disulfide linker between a triarylphosphine moiety, which allows selective conjugation to azide-containing proteins, and a biotin moiety that can allow easy isolation through its strong affinity toward avidin-coated solid beads. The disulfide linkage within this reagent can allow the easy release of the bound molecules of interest, which is difficult to achieve when a biotin:avidin pair is used alone, by reducing the disulfide bond of the reagent with DTT. Preliminary in vitro biological assays with azidelabeled and unlabeled cell lysates and a pure protein Nup62 showed that the Biotin-S-S-Phosphine reagent is highly reactive toward the free thiol groups of proteins. When a molecular tool with a disulfide linker is applied to the enrichment of the molecules of interest from other species, it is important to block the free-thiols of the sample using exhaustive alkylation prior to the Staudinger ligation reactions to restore the bioorthogonal nature of this reaction.

Thalassobius aestuarii sp. nov., Isolated from Tidal Flat Sediment

  • Yi Ha-Na;Chun Jong-Sik
    • Journal of Microbiology
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    • v.44 no.2
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    • pp.171-176
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    • 2006
  • A strictly aerobic, non-motile, ovoid-shaped Alphaproteobacteria, designated strain $JC2049^T$ was isolated from a tidal flat sediment sample. The results of 16S rRNA gene sequence analysis indicated that this isolate belonged to the genus Thalassobius, with a sequence similarity of 96.9-97.3% to other valid Thalassobius spp. The cells required 1-7% NaCl for growth (optimum 2%) and accumulated $poly-\beta-hydroxybutyrate$. Nitrite was reduced to nitrogen, but nitrate was not reduced to nitrite. No genetic potential for aerobic anoxygenic photosynthesis was detected. The primary isoprenoid quinone (Ubiquinone-10), predominant cellular fatty acids $(C_{18:1}{\omega}7c,\;11\;methyl\;C_{18:1}\omega7c\;and\;C_{16:0})$ and DNA G+C content (61 mol %) were all consistent with the assignment of this isolate to the genus Thalassobius. Several phenotypic characteristics clearly distinguished our isolate from other Thalassobius species. The degree of genomic relatedness between strain $JC2049^T$ and other Thalassobius species was in a range of 20-43 %. The polyphasic data presented in this study indicates that our isolate should be classified as a novel species within the genus Thalassobius. The name Thalassobius aestuarii sp. novo is therefore proposed for this isolate; the type strain is $JC2049^T(=IMSNU\;14011^T=KCTC\;12049^T=DSM\;15283^T)$.

Screening of Antimutagenic Activities from Cereals and Beans Including Rice (쌀을 포함한 곡류 및 두류의 항변이원 활성의 검색)

  • Kang, Mi-Young;Choi, Young-Hee;Nam, Seok-Hyun
    • Applied Biological Chemistry
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    • v.39 no.6
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    • pp.419-423
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    • 1996
  • We have established the quantitative method for assay antimutagenic activity from natural products using SOS chromotest technique. Establishment of the method in this study makes it possible to numerize antimutagenic activities from samples in term of the sample amount required for 50% inhibition to mutagenic activity induced by the chemical mutagen under the standard assay condition. Antimutagenic activities of rices from different cultivars as well as other cereals were assayed through this method. The results revealed that antimutagenic activities of mutant cultivar, Suwon 393(Hyangdo) and Sanghaehyanghyulla(Jado), were higher than Chuchung which mainly consumed for steamed rice, and also indicated that antimutagenic activities of cereals, such as job'tear, buckwheat, small red bean, black bean were generally higher than that of brown rice.

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A Rapid Method for the Measurement of the Absolute Activity of Carbon-14 in Pea Plant Tissue

  • Kendall, F.H.;Park, Chang-Kyu;Mer, C.L.
    • Applied Biological Chemistry
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    • v.18 no.2
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    • pp.56-60
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    • 1975
  • A rapid method for the measurement of the absolute activity of carbon-14 in cotyledons and root of etiolated pea seedlings has been developed. Fresh tissue was frozen in liquid air, ground and suspended in gel phosphor and subjected to measurement for its radioactivity by liquid scintillation counter. Apparent activity of the suspended tissue sample calculated by counting efficiency value obtained by internal standardisation, was found to be related to absolute activity of the tissue, determined by flask combustion technique, by a constant factor. Once this factor is determined experimentally, analysis of C-14 lebelled tissue involves only fairly simple suspension counting by liquid scintillation counter. Present method appears to be applicable to other tissues tagged with C-14.

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Extraction and Mixing Effects of Grape (Campbell) Seed Oil

  • Kang, Han-Chul;Min, Young-Kyoo;Hwang, Jong-Taek;Kim, Si-Dong;Kim, Tae-Su
    • Journal of Applied Biological Chemistry
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    • v.42 no.4
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    • pp.175-179
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    • 1999
  • Grape seed oil was extracted using different preparatory treatments as follows: (1) grinding, (2) grinding and roasting, (3) grinding and wet- roasting, (4) grinding, roasting, and wet-roasting, and (5) grinding, wet-roasting, and wet-roasting. The highest antioxidant activity was obtained from the sample with the method (2). Initial states of oxidation were similar except method (1) that showed more oxidized state, being P.O.V.8. Acid values were observed in the range from 1.42 to 1.89. The lowest acid value was found as 1.42 in method (1) and those of others were somewhat higher, indicating that heating process of roasting produced some free fatty acids. From the results of sensory evaluation, the best odor and taste were obtained from the methods (2) and (3). Repetitive procedure of wet-roasting, like method 5, caused some loss of flavor components and decrease in the sensory evaluation score. Addition of grape seed oil (method 2) to soybean and perilla oil at the level of 20% retained considerable antioxidant activities as much as 4.3 and 5 times, respectively, than 100% soybean or perilla oil stored for 12 weeks. When soybean or perilla oil was mixed with 20% grape seed oils, P.O.V. decreased to half of that of unmixed oils.

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Identification of Higenamine nad its Metabolites in Rat by Gas Chromatography/Mass Spectrometry

  • Ryu, Jae-chun;Song, Yun-Seon;Kim, Myung-Soo;Cho, Jung-Hyuck;Yunchoi, Hye-Sook
    • Archives of Pharmacal Research
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    • v.16 no.3
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    • pp.213-218
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    • 1993
  • ($\pm$)-Higenamine is known as a cardiotonic principle of aconite root (root of Aconitum spp., Ranunculaceae). A simple and sensitive detection method for higenamine was developed by using gas chromatography-mass spectrometry (GC/MS). The recovery of higenamine after extraction and concentration with XAD-2 resin column was around 95% from rat biological fluids such as bile, plasma and urine. The limits of detection of higenamine in these biological fluids were approximately 0.1 ng/ml each. It has well been suggested that tetrahydroisoquinolines possessing catechol moiety such as higenamine should be subjected to the catechol-O-methyl transferase (COMT) activity in vivo. We detected two major peaks of presumed metabolites of higenamine in the total ion chromatogram obtained from the rat urine sample after the oral adminstration of ($\pm$)-higenamine. The scan mass spectrum of one of the metabolties coincided with those obtained from coclaurine $(C_6$-O-methyl higenamine) and those of the other metabolite are suggestive of isococlaurine $(C_7$-O-methyl higenamine).

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Factors Affecting HPV Vaccination Rates of Daughters Aged 12 years (만 12세 초등학생 딸의 자궁경부암 예방접종 실태 및 영향요인)

  • Moon, Hee
    • Journal of Korean Biological Nursing Science
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    • v.20 no.2
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    • pp.114-121
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    • 2018
  • Purpose: The purpose of this study was to investigate the rate of human papilloma virus (HPV) vaccinations among 12-year-old daughters and to analyze factors influencing the mothers' decisions to vaccinate their daughters. Methods: A cross sectional descriptive study was conducted using a convenience sample of 139 mothers. Data was analyzed using SPSS WIN 23.0. Descriptive statistics and a logistic regression analysis were conducted. Results: The vaccination rate of HPV among children was 43.9%. Mothers showed a higher knowledge of the HPV vaccination than of cervical cancer and of human papilloma virus. In self-efficacy scores, the subscores of self-regulation efficacy were higher than self-confidence and task difficulty preference. The factors influencing the vaccination of daughters included the age of the daughters at the time of the vaccination, the provision of information on the HPV vaccine, knowledge of the HPV vaccination, and self-confidence. Conclusion: In order to increase the HPV vaccination rate, it is necessary to provide accurate scientific knowledge to mothers. A variety of intervention strategies should be developed to enhance the confidence of mothers so that mothers who want to provide the HPV vaccination to their daughters are able to follow through and provide the vaccination.

The Evaluation of River Naturalness for Biological Habitat Restoration : II. Application of Evaluation Method (하천의 생물서식처 복원을 위한 하천자연도평가 : II. 평가방법의 적용)

  • Park, Bong-Jin;Shin, Jong-Iee;Jung, Kwan-Sue
    • Journal of Korea Water Resources Association
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    • v.38 no.1
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    • pp.49-57
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    • 2005
  • The investigation and evaluation of river naturalness was conducted for sample rivers-Hongchungang, Mihochun, Naesungchun - using the method from previous paper 'The Evaluation of River Naturalness for Habitat Restoration : I. Proposal of Evaluation Method'. As a result, Hongchungang and Naesungchun, Mihochun showed 2$^{nd}$ Grades with averaged point 1.92, 1.43, and 2.31. Also comparison and examination of the relationship between water quality and river naturalness shows a little relation with coefficient of correlation 0.575. This result means that the evaluation of river naturalness can be possibly used as index to evaluate river ecology, from a different standpoint with water quality.oint with water quality.

The Relationships between Particulate Matter Risk Perception, Knowledge, and Health Promoting Behaviors among College Students (대학생의 미세먼지 위험에 대한 인식, 지식, 관리행위에 대한 지각된 장애와 건강 관리행위의 관계)

  • Park, Eunsun;Oh, Hyun-Jung;Kim, Sue-Hyon;Min, Ari
    • Journal of Korean Biological Nursing Science
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    • v.20 no.1
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    • pp.20-29
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    • 2018
  • Purpose: This study aimed to determine the relationships between particulate matter risk perception, knowledge, and perceived barriers and health-promoting behaviors among college students. Methods: Data for this cross-sectional study were collected from September 1 to 30, 2017. The study sample consisted of 85 students from a university, Seoul. Students not living in the Seoul metropolitan area during the spring 2017 semester were excluded from participation. Pearson's correlation coefficient was used to identify relationships among study variables. Results: A significant positive correlation existed between particulate matter risk perception and health-promoting behaviors related to particulate matter (r= .51, p< .001). Among the risk perception subdomains, attention (r= .47, p< .001) and health effect (r= .55, p< .001) showed strong positive relationships with health-promoting behaviors. No significant relationships were found between knowledge (r= .12, p= .288) or perceived barriers (r= -.12, p= .264) and health-promoting behaviors related to particulate matter. Conclusion: Based on the study results, strategies for enhancing particulate matter risk perception are needed to increase the level of health-promoting behaviors related to particulate matter among college students.

The Microbiological Studies of Potable Water from Rural Area of Kyung Gi-Do (경기도(京畿道) 농촌지역(農村地域) 음료수(飮料水)의 미생물학적(微生物學的) 조사연구(調査硏究))

  • Park, Yun-Hee
    • Applied Biological Chemistry
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    • v.22 no.3
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    • pp.142-144
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    • 1979
  • To investigate the potability of water from rural area of Kyung-Gi-Do, the bacteriological examination of water samples from Yong-In Gun and Hwa-Sung Gun were carried out. The results obtained can be summarized as follows: 1. The total viable cell count showed great difference between the samples; 3 samples included less than $1{\times}10^2$ per ml and 6 samples more than $1{\times}10^4$ per ml. The maximum count arrived at $1{\times}10^5$ per ml. 2. The existence of faecal Streptococcus was confirmed in the samples of 4 areas. 3. For the potability, only one sample was remarked as positive and all the others were judged as negative or suspect.

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