• Title/Summary/Keyword: biobank

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Material Transfer Agreement for Human Material (인체 유래 물질과 관련된 계약)

  • Kim, Jang-Han
    • The Korean Society of Law and Medicine
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    • v.8 no.1
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    • pp.9-34
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    • 2007
  • Human material is considered as an independent object after departing from human body. But unlike other materials, that is not allowed for the trading because of the nature of personality. According to the present legal system, the human material is only permitted to donate to the researcher or biobank for scientific study. Bur after the collection, the human materials are regarded as a valuable assets and the collectors want to get more economic gains. If the neutral modulators serve for the justifiable circulation. The economic motivations could be prevented within material transfer processes. In real life, the neutral modulator is hard to find and most of partipants are involved in the economic interests. In this situation, it may be justifiable to permit the person who donate his body material to pursue reach through right on his material. The problem is how to measure the value of human material and how to treat the informed consent. If the essential portion of human personality is contributed to the value of human material and if only his material can be served for the invention, the tissue donator can get economic interests on his body material as his property. That is based on the rule of processing of human efforts on civil law.

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Associations for whole-exome sequencing profiling with carcass traits in crossbred pigs

  • Jae Young, Yoo;Sang-Mo, Kim;Dong Hyun, Lee;Gye-Woong, Kim;Jong-Young, Lee
    • Korean Journal of Agricultural Science
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    • v.49 no.3
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    • pp.595-606
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    • 2022
  • Industrial pig breeding has used the Duroc breed and terminal sires in a three-way crossbred system in Korea. This study identified the gene variation patterns related to carcass quality in crossbred pigs ([Landrace × Yorkshire] × Duroc) using whole-exome sequencing (WES). This study used crossbred pigs and divided them into two groups (first plus grade, n = 5; second grade, n = 5). Genomic DNA samples extracted from the loin muscles of both groups were submitted for WES. A set of validated single-nucleotide polymorphisms (SNPs: n = 102) were also subjected to the Kompetitive allele-specific polymerase chain reaction (KASP) to confirm the WES results in the loin muscles. Based on the WES, SNPs associated with meat quality were found on chromosomes 5, 10, and 15. We identified variations in three of the candidate genes, including kinesin family member 5B (KIF5B), GLI family zinc finger 2 (GLI2), and KIF26B, that were associated with meat color, marbling score, and backfat thickness. These genes were associated with meat quality and the mitogen-activated protein kinase (MAPK) and Hedgehog (Hh) signaling pathways in the crossbred pigs. These results may help clarify the mechanisms underlying high-quality meat in pigs.

Establishment of the large-scale longitudinal multi-omics dataset in COVID-19 patients: data profile and biospecimen

  • Jo, Hye-Yeong;Kim, Sang Cheol;Ahn, Do-hwan;Lee, Siyoung;Chang, Se-Hyun;Jung, So-Young;Kim, Young-Jin;Kim, Eugene;Kim, Jung-Eun;Kim, Yeon-Sook;Park, Woong-Yang;Cho, Nam-Hyuk;Park, Donghyun;Lee, Ju-Hee;Park, Hyun-Young
    • BMB Reports
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    • v.55 no.9
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    • pp.465-471
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    • 2022
  • Understanding and monitoring virus-mediated infections has gained importance since the global outbreak of the coronavirus disease 2019 (COVID-19) pandemic. Studies of high-throughput omics-based immune profiling of COVID-19 patients can help manage the current pandemic and future virus-mediated pandemics. Although COVID-19 is being studied since past 2 years, detailed mechanisms of the initial induction of dynamic immune responses or the molecular mechanisms that characterize disease progression remains unclear. This study involved comprehensively collected biospecimens and longitudinal multi-omics data of 300 COVID-19 patients and 120 healthy controls, including whole genome sequencing (WGS), single-cell RNA sequencing combined with T cell receptor (TCR) and B cell receptor (BCR) sequencing (scRNA(+scTCR/BCR)-seq), bulk BCR and TCR sequencing (bulk TCR/BCR-seq), and cytokine profiling. Clinical data were also collected from hospitalized COVID-19 patients, and HLA typing, laboratory characteristics, and COVID-19 viral genome sequencing were performed during the initial diagnosis. The entire set of biospecimens and multi-omics data generated in this project can be accessed by researchers from the National Biobank of Korea with prior approval. This distribution of large-scale multi-omics data of COVID-19 patients can facilitate the understanding of biological crosstalk involved in COVID-19 infection and contribute to the development of potential methodologies for its diagnosis and treatment.

Import quarantine for supporting local fisheries 'M-LIMS' Analysis and Design (수입 수산물의 현지 검역 지원용 'M-LIMS'의 분석 및 설계)

  • Yang, Kyung-Sik;Ahn, Woo-Young;Park, Sung-Sik;Koo, Kyung-Wan
    • Proceedings of the Korean Society of Computer Information Conference
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    • 2014.07a
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    • pp.433-436
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    • 2014
  • 기존 수입 수산물 검역체계는 수십억의 예산을 사용하고 있다. 하지만, 현지 조사에서도 파견원을 보내는 시간이 존재하고 그에 따라 수산물의 상태가 달라질 수 도 있다. 이 논문에서는 이러한 검역체계의 한계를 극복하기 위하여 차량 내부에 장비를 설치 데이터를 분석 후 Server에 전송하는 시스템을 제안한다. 이 시스템을 사용하여 기존 검역체계의 단점을 보완한다. 그리고 베트남을 예상 시나리오로 설정하고 계획을 하였다. 이 시스템은 시간, 공간적인 제약을 극복하고 실시간 상호작용이 원활한 시스템으로 마련될 것이다.

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How is it possible to use the human body material for research without the written consent of the donor? (바이오뱅크 내 동의서 없는 폐기용 인체유래물 자원의 재활용을 위한 정당성 모색)

  • JEONG, Chang Rok;HEO, Eusun
    • The Korean Society of Law and Medicine
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    • v.18 no.1
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    • pp.199-235
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    • 2017
  • A topic of particular interest for biotech researchers are handling of human tissue specimens that may be used for present, or stored for future, research purposes. This article examines the ethical and legal legitimacy of using human materials for research purposes with special attention to the issues of informed consent and confidentiality. The purpose of this paper is moral and for law legitimacy exploring of the utilization of the human material without donator's consent. It is a known fact that future medical care should be exchanged a paradigm by preventive health care through a human meterial research. The developed country have established a biobank for a human meterial research and supported a researcher. Korea is the same, too. When it is done a defect, as for the thing researcher derived from the Korean human meterial research. The written consent of the donator can keep a human meterial research origin thing, but cannot use it now. I will justify morally and for law that researcher can use the human material without written consent. We can change the concept of recycling of human material. It is not mean only burning that recycling of human materials for research.

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Trends in Saliva Research and Biomedical Clinical Applications (타액 연구의 최신 지견과 임상 응용)

  • Soyoung Park;Eungyung Lee;Jonghyun Shin;Taesung Jeong
    • Journal of the korean academy of Pediatric Dentistry
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    • v.50 no.1
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    • pp.1-12
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    • 2023
  • Function of salivary gland and saliva composition can be an indicator of individual's health status. Recently, saliva has been thought to have a high potential for usage in the biomedical field to diagnose, evaluate, and prevent systemic health due to the technological advances in analyzing and detecting small elements such as immunological and metabolic products, viruses, microorganisms, hormones in saliva. As a diagnostic specimen, saliva has some useful advantages compared to serum. Because of simple non-invasive method, saliva sampling is quite comfort for the patient, and it doesn't require specialists to collect samples. The possibility of infection during the collection process is also low. For this reason, proteins, genetic materials, and various biomarkers in saliva are actively being utilized on studying stress, microbiomics, genetics, and epigenetics. For the research on collecting big data related to systemic health, the needs on biobank has been focused. Regeneration of salivary gland based on tissue engineering has been also on advancement. However, there are still many issues to be solved, such as the standardization of sample collection, storage, and usage. This review focuses on the recent trends in the field of saliva research and highlight the future perspectives in biomedical and other applications.

Bioactive Phenolic Constituents from the Culms of Phyllostachys bambusoides

  • Kim, Hyun-Jung;Kang, Min-Ah;Kim, So-Hyun;Yim, Soon-Ho;Lee, Ik-Soo
    • Natural Product Sciences
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    • v.17 no.4
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    • pp.267-272
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    • 2011
  • In our search for bioactive phenolics from plants, the culms of Phyllostachys bambusoides has been selected for investigation of anti-cariogenic and 1,1-diphenylpicrylhydrazyl (DPPH) radical scavenging agents based on the initial screening results. Fractionation process of n-hexane and $CHCl_3$ extracts afforded four phenolic constituents, ferulic acid (1), vanillin (2), coniferaldehyde (3), and coniferyl alcohol (4) as guided by their DPPH free radical scavenging activities. Additionally, activity-guided fractionation of EtOAc extract with anti-cariogenic activity has resulted in the isolation of coniferaldehyde (3), 2,6-dimethoxy-p-benzoquinone (5), p-methoxycinnamic acid (6), (${\pm}$)-balanophonin (7), and 6-methoxychromanone (8). The structures of 1 - 8 were determined by spectroscopic data interpretation, and also by comparison of their data with the published values. Phenolic compounds 1 - 4 exhibited similar DPPH radical scavenging activities compared with the synthetic antioxidant, butylated hydroxytoluene (BHT), and compounds 3 and 5 - 8 showed significant antibacterial activity against cariogenic oral streptococci, Streptococcus mutans and S. sobrinus.

Mongolia Medical Assistance 'M-LIMS' Design and Analysis (몽골 의료지원용 'M-LIMS' 의 설계 및 분석)

  • Yang, Kyung-Sik;Ahn, Woo-Young;Park, Sung-Sik;Koo, Kyung-Wan
    • Proceedings of the Korean Society of Computer Information Conference
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    • 2014.07a
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    • pp.437-441
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    • 2014
  • 몽골은 현재 국민에 대한 의료 평등이 잘 되어있지 않다. 몽골의 의료 기관은 1,2,3차 기관 세 종류가 있는데 1차는 기본기관, 2,3차는 전문기관이다. 하지만 전문기관은 도시에만 존재하기 때문에 도시권 외 주민들은 전문기관의 의료 서비스를 받기가 매우 힘들다. 게다가 해외 의료 기관들도 모두 수도 울란바토르에 집중되어 있기 때문에 그 격차는 더욱 더 심해진다. 이러한 의료 불평등을 조금이라도 해소하기 위하여 제안하는 것이 'M-LIMS' 이다. 'M-LIMS'는 기본적으로 이동식 병원이다. 'M-LIMS'에서는 환자 진료를 위한 몇 가지 기능을 제공한다. 첫 번째로 환자 관리를 위한 환자용 차트 작성이다. 두 번째로는 환자들의 진료 상황을 볼 수 있는 리스트 검색 및 공유 기능이다. 세 번째로는 환자들의 데이터들을 이용하여 규격화 된 차트로 변환하는 차트 작성 기능이다. 그리고 네 번째로는 차량 내 의사뿐이 아닌 다른 의사도 진료에 참여 할 수 있는 원격 진료 기능이다. 이렇듯 'M-LIMS'의 기능을 이용한다면 몽골의 의료 평등에 한 걸음 더 기여를 할 수 있지 않을까 기대를 한다.

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Taxonomic Revision of the Genus Lactifluus (Russulales, Basidiomycota) of South Korea

  • Lee, Hyun;Wissitrassameewong, Komsit;Park, Myung Soo;Fong, Jonathan J.;Verbeken, Annemieke;Kim, Changmu;Lim, Young Woon
    • Mycobiology
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    • v.49 no.4
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    • pp.308-345
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    • 2021
  • Lactifluus (Pers.) Roussel is an ectomycorrhizal genus that was recently recognized to be distinct from the genus Lactarius. To date, 226 Lactifluus species have been reported worldwide. Misidentification of Lactifluus species is common because of intraspecific morphological variation, cryptic diversity, and the limited number of taxonomic keys available. Molecular data are indispensable for species delimitation; a multilocus phylogenetic analysis showed that most Asian Lactifluus species are not conspecific with morphologically similar species present on other continents. In particular, Korea has misused European and North American Lactifluus names. In this study, we evaluated the taxonomy of Lactifluus in Korea using both morphological and multilocus molecular (ITS, nrLSU, rpb1, and rpb2) data. We examined 199 Lactifluus specimens collected between 1980 and 2016, and a total of 24 species across the four Lactifluus subgenera were identified. All Korean species are distinct and clearly separated from European and North American species. Five taxa corresponded to previously described species from Asia and the remaining 19 taxa are confirmed as new species. Herein, we provide keys to the Korean Lactifluus species within their subgenera, molecular phylogenies, a summary of diversity, and detailed description of the new species.

Exploration of errors in variance caused by using the first-order approximation in Mendelian randomization

  • Kim, Hakin;Kim, Kunhee;Han, Buhm
    • Genomics & Informatics
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    • v.20 no.1
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    • pp.9.1-9.6
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    • 2022
  • Mendelian randomization (MR) uses genetic variation as a natural experiment to investigate the causal effects of modifiable risk factors (exposures) on outcomes. Two-sample Mendelian randomization (2SMR) is widely used to measure causal effects between exposures and outcomes via genome-wide association studies. 2SMR can increase statistical power by utilizing summary statistics from large consortia such as the UK Biobank. However, the first-order term approximation of standard error is commonly used when applying 2SMR. This approximation can underestimate the variance of causal effects in MR, which can lead to an increased false-positive rate. An alternative is to use the second-order approximation of the standard error, which can considerably correct for the deviation of the first-order approximation. In this study, we simulated MR to show the degree to which the first-order approximation underestimates the variance. We show that depending on the specific situation, the first-order approximation can underestimate the variance almost by half when compared to the true variance, whereas the second-order approximation is robust and accurate.