• Proceedings of the KAIS Fall Conference
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• 2010.05a
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• pp.404-407
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• 2010

일반적으로 온톨로지는 관심 있는 특정 도메인에 대해 생성되므로 넓은 문제 영역에서 단일 온톨로지가 응답하는 것을 기대할 수 없다. 이것은 큰 작업에서 상이한 온톨로지의 데이터를 사용할 필요가 있음을 의미한다. 또한 대부분의 온톨로지는 한 사람이나 작은 그룹에 의해 개발되고, 그래프가 아닌 트리로 생각할 수 있다. 본 논문에서는 트리를 이용하여 온톨로지를 구축하고, 이해하고, 처리하는 효율적인 방법을 보이고자 한다. 온톨로지 병합 오퍼레이션의 정의를 위해 온톨로지의 구조, 구성 요소, 표현을 자세하게 정의하고, 두 온톨로지를 병합하는 방법에 대한 세부 사항을 보인다.

• Journal of Korea Multimedia Society
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• v.19 no.8
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• pp.1498-1504
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• 2016

The progress of mobile computing technology is bringing a large amount of multimedia contents such as image. Thus, we need an image retrieval system which searches semantically relevant image. In this paper, we propose a semantic image annotation and retrieval in mobile environments. Previous mobile-based annotation approaches cannot fully express the semantics of image due to the limitation of current form (i.e., keyword tagging). Our approach allows mobile devices to annotate the image automatically using the context-aware information such as temporal and spatial data. In addition, since we annotate the image using RDF(Resource Description Framework) model, we are able to query SPARQL for semantic image retrieval. Our system implemented in android environment shows that it can more fully represent the semantics of image and retrieve the images semantically comparing with other image annotation systems.

• Journal of Microbiology
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• v.45 no.6
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• pp.541-546
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• 2007

Red algae are distributed globally, and the group contains several commercially important species. Griffithsia okiensis is one of the most extensively studied red algal species. In this study, we conducted expressed sequence tag (ESTs) analysis and synonymous codon usage analysis using cultured G. okiensis samples. A total of 1,104 cDNA clones were sequenced using a cDNA library made from samples collected from Dolsan Island, on the southern coast of Korea. The clustering analysis of these sequences allowed for the identification of 1,048 unigene clusters consisting of 36 consensus and 1,012 singleton sequences. BLASTX searches generated 532 significant hits (E-value <$10^{-4}$) and via further Gene Ontology analysis, we constructed a functional classification of 434 unigenes. Our codon usage analysis showed that unigene clusters with more than three ESTs had higher GC contents (76.5%) at the third position of the codons than the singletons. Also, the majority of the optimal codons of G. okiensis and Chondrus crispus belonging to Bangiophycidae were G-ending, whereas those of Porphyra yezoensis belonging to Florideophycidae were G-ending. An orthologous gene search for the P. yezoensis EST database resulted in the identification of 39 unigenes commonly expressed in two rhodophytes, which have putative functions for structural proteins, protein degradation, signal transduction, stress response, and physiological processes. Although experiments have been conducted on a limited scale, this study provides a material basis for the development of microarrays useful for gene expression studies, as well as useful information for the comparative genomic analysis of red algae.

• International Journal of Advanced Culture Technology
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• v.8 no.3
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• pp.247-253
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• 2020

It has emerged Food-content among various forms of 1-person media through social media. Food-content influencer also market products through 1-person media, generating revenue through increased views and subscribers of 1-person media. It also sells products through sponsorship. In general, there is a profit structure through 1-person media viewing, but research on how restaurant companies generate profits directly through food-content is insufficient. In addition, research on converting subscribers to consumers through food-contents is minimal. In this paper, we propose an experiential application system based on the behavior of food-content creators. The proposed system collects and categorizes food-content information, and maps between highly related words to organize into keyword categories. The ontology tag-based concept network applied to the proposed system connects representative information by pre-extracting/mapping information related to information requests among a wide range of data. This method maps relevant food-content information to provide the user with data collected/storage in the form of an application. The user uses the application while watching the food eaten by the influencer and creator. And, it is meaningful that the user could be provided is provided with information about the food they want to eat.

• The Plant Pathology Journal
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• v.29 no.3
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• pp.330-337
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• 2013

Rice stripe virus (RSV), the type member of the genus Tenuivirus, transmits by the feeding behavior of small brown planthopper (SBPH), Laodelphax striatellus. To investigate the interactions between the virus and vector insect, total RNA was extracted from RSV-viruliferous SBPH (RVLS) and non-viruliferous SBPH (NVLS) adults to construct expressed sequence tag databases for comparative transcriptome analysis. Over 30 million bases were sequenced by 454 pyrosequencing to construct 1,538 and 953 of isotigs from the mRNA of RVLS and NVLS, respectively. The gene ontology (GO) analysis demonstrated that both libraries have similar GO structures, however, the gene expression pattern analysis revealed that 17.8% and 16.8% of isotigs were up- and down-regulated significantly in the RVLS, respectively. These RSV-dependently regulated genes possibly have important roles in the physiology of SBPH, transmission of RSV, and RSV and SBPH interaction.

• KSBB Journal
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• v.26 no.2
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• pp.131-138
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• 2011

Some computational approaches are needed for clarifying RNAi sequences, because it takes much time and endeavor that almost of RNAi sequences are verified by experimental data. Incorrectness of RNAi mechanism and other unaware factors in organism system are frequently faced with questions regarding potential use of RNAi as therapeutic applications. Our massive parallelized pair alignment scoring between dsRNA in Genebank and expressed sequence tags (ESTs) in Caenorhabditis elegans Genome Sequencing Projects revealed that this provides a useful tool for the prediction of RNAi induced cosuppression details for practical use. This pair alignment scoring method using high performance computing exhibited some possibility that numerous unwanted gene silencing and cosuppression exist even at high matching scores each other. The classifying the relative higher matching score of them based on GO (Gene Ontology) system could present mapping dsRNA of C. elegans and functional roles in an applied system. Our prediction also exhibited that more than 78% of the predicted co-suppressible genes are located in the ribosomal spot of C. elegans.

• Journal of Veterinary Science
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• v.25 no.4
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• pp.54.1-54.16
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• 2024

Importance: As one of the main etiologic agents of infectious diseases in pigs, pseudorabies virus (PRV) infections have caused enormous economic losses worldwide. EP0, one of the PRV early proteins (EP) plays a vital role in PRV infections, but the mechanisms are unclear. Objective: This study examined the function of EP0 to provide a direction for its in-depth analysis. Methods: In this study, the EP0-deleted PRV mutant was obtained, and Tandem Mass Tag-based proteomic analysis was used to screen the differentially expressed proteins (DEPs) quantitatively in EP0-deleted PRV- or wild-type PRV-infected porcine kidney 15 cells. Results: This study identified 7,391 DEPs, including 120 and 21 up-regulated and down-regulated DEPs, respectively. Western blot analysis confirmed the changes in the expression of the selected proteins, such as speckled protein 100. Comprehensive analysis revealed 141 DEPs involved in various biological processes and molecular functions, such as transcription regulator activity, biological regulation, and localization. Conclusions and Relevance: These results holistically outlined the functions of EP0 during a PRV infection and might provide a direction for more detailed function studies of EP0 and the stimulation of lytic PRV infections.

• Journal of Microbiology and Biotechnology
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• v.19 no.8
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• pp.774-780
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• 2009

Flammulina velutipes is a popular edible basidiomycete mushroom found in East Asia and is commonly known as winter mushroom. Mushroom development showing dramatic morphological changes by different environmental factors is scientifically and commercially interesting. To create a genetic database and isolate genes regulated during mushroom development, cDNA libraries were constructed from three developmental stages of mycelium, primordium, and fruit body in F. velutipes. We generated a total of 5,431 expressed sequence tags (ESTs) from randomly selected clones from the three cDNA libraries. Of these, 3,332 different unique genes (unigenes) were consistent with 2,442 (73%) singlets and 890 (27%) contigs. This corresponds to a redundancy of 39%. Using a homology search in the gene ontology database, the EST unigenes were classified into the three categories of molecular function (28%), biological process (29%), and cellular component (6%). Comparative analysis found great variations in the unigene expression pattern among the three different unigene sets generated from the cDNA libraries of mycelium, primordium, and fruit body. The 19-34% of total unigenes were unique to each unigene set and only 3% were shared among all three unigene sets. The unique and common representation in F. velutipes unigenes from the three different cDNA libraries suggests great differential gene expression profiles during the different developmental stages of F. velutipes mushroom.

• The KIPS Transactions:PartD
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• v.18D no.2
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• pp.133-142
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• 2011

To ensure the successful employment of semantic web services, it is essential that they rely on the use of high quality ontologies. However, building such ontologies is difficult and costly, thus hampering web service deployment. This study automatically builds ontologies from WSDL documents and their underlying semantics, and presents discovery methods of similar web service operations using these ontologies. The key ingredient is techniques that cluster parameters in the collection of web services into semantically meaningful concepts, and capture the hierarchical relationships between the words contained in the tag. We implement an operation retrieval system for web services. This system finds out a ranked set of similar operations using a novel similarity measurement method, and selects the most optimal operation which satisfies user's requirements. It can be directly used for the web services composition.

• Journal of Information Management
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• v.40 no.2
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• pp.71-94
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• 2009

Indexing images using traditional indexing methods like taxonomy is not always efficient because of its visual content. This study examined how to apply folksonomies to image retrieval. To do this, first, we developed a category model for image tags found in Flickr. The model includes five categories and seventeen subcategories. Second, in order to evaluate the usefulness of the model to represent the various image tags as well as to investigate the end-user tagging behavior, three researchers classified the sampled image tags(141 most popular tags, 105 tags on three individual tag clouds and 3,848 image tags assigned on 156 images) according to the model. Finally, based on the research results, we proposed three methods for efficient image retrieval: extending folksonomies by combining them with ontologies; improving image retrieval efficiency using visual content and folksonomies; and updating taxonomy using folksonomies.