1 |
OpenMosix Project. http://openmosix.sourceforge.net.(2008).
|
2 |
MPICH2. http://www.mcs.anl.gov/research/projects/mpich2/. (2010).
|
3 |
Serolis: Dot-plot software for literal and genetic sequences and DNA translation. http://www.code10.org.(2009)
|
4 |
Barak, A. and O. La'adan (1997) The MOSIX multicomputer operating system for high performance cluster computing, Future Gen. Comp. Sys. 13: 361-372.
|
5 |
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
DOI
|
6 |
Building a diskless Linux Cluster for high performance computations from a standard Linux distribution. http://www.uni-due.de/-bt0756/publications/2003-cluster/.(2003).
|
7 |
Dynamic Host Configuration Protocol. http://www.ietf.org/rfc/rfc2131.txt.(1997).
|
8 |
NFS version 3 Protocol Specification. http://www.ietf.org/rfc/rfc1813.txt.(1995).
|
9 |
Kamath, R. S., A. G. Fraser, Y. Dong, G. Poulin, R. Durbin, M. Gotta, A. Kanapin, N. Le Bot, S. Moreno, M. Sohrmann, D. P. Welchman, P. Zipperlen, and J. Ahringer (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237.
DOI
ScienceOn
|
10 |
Hutvagner, G. and P. D. Zamore (2002) RNAi: nature abhors a double-strand. Curr. Opin. Genet. Dev. 12: 225-232.
DOI
ScienceOn
|
11 |
Smith, T. F. and M. S. Waterman (1981) Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
DOI
|
12 |
Kim, T. and H. Joo (2010) ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment. BMC Bioinformatics 11:467.
DOI
|
13 |
HPC (High Performance Computer) Linux Cluster How To. http://wiki.kldp.org/KoreanDoc/html/HPC-KLDP/index.html. (2003).
|
14 |
Schwarz, D. S., G. Hutvagner, T. Du, Z. Xu, N. Aronin, and P. D. Zamore (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
DOI
ScienceOn
|
15 |
Maeda, I., Y. Kohara, M. Yamamoto, and A. Sugimoto (2001) Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr. Biol. 11: 171-176.
DOI
ScienceOn
|
16 |
Sijen, T., J. Fleenor, F. Simmer, K. L. Thijssen, S. Parrish, L. Timmons, R. H. Plasterk, and A. Fire (2001) On the role of the RNA amplification in dsRNA-triggered gene silencing. Cell 107: 465-476.
DOI
ScienceOn
|
17 |
Cerutti, L., N. Mian, and A. Bateman (2000) Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the piwi domain. Trends Biochem. Sci. 25: 481-482.
DOI
ScienceOn
|
18 |
Ketting, R. F. and R. H. Plasterk (2000) A genetic link between co-suppression and RNA interference in C. elegans. Nature 404: 296-298.
DOI
ScienceOn
|
19 |
Dernburg, A. F., J. Zalevsky, M. P. Colaiacovo, and A. M.Villeneuve (2000) Transgene-mediated cosuppression in the C. elegans germ line. Genes Dev. 14: 1578-1583.
|
20 |
Zhong, W. and P. W. Sternberg (2006) Genome-wide prediction of C. elegans genetic interactions. Science 311: 1481-1484.
DOI
|
21 |
Montgomery, M. K., S. Xu, and A. Fire (1998) RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 95: 15502-15507.
DOI
ScienceOn
|
22 |
Arziman, Z., T. Horn, and M. Boutros (2005) E-RNAi: a web application to design optimized RNAi constructs. Nucleic Acids Res. 33: W582-W588.
DOI
ScienceOn
|
23 |
Fire, A., S. Xu, M. Montgomery, S. Kostas, S. Driver, and C. Mello (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806-811.
DOI
ScienceOn
|
24 |
Hammond, S. M., A. A. Caudy, and G. J. Hannon (2001) Posttranscriptional Gene Silencing by Double-stranded RNA. Nature Rev. Gen. 2: 110-119.
DOI
ScienceOn
|
25 |
Chen, Y., A. Wan, and W. A. Liu (2006) Fast parallel algorithm for finding the longest common sequence of multiple biosequences. BMC Bioinformatics 4: S4.
|
26 |
Ashrafi, K., F. Y. Chang, J. L. Watts, A. G. Fraser, R. S. Kamath, J. Ahringer, and G. Ruvkun (2003) Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes. Nature 421: 268-272.
DOI
ScienceOn
|
27 |
Kamath, R. S., M. Martinez-Campos, P. Zipperlen, A. G. Fraser, and J. Ahringer (2000) Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans. Genome Biol. 2: 1-10.
|
28 |
Sijen, T., I. Vijn, A. Rebocho, R. van Blokland, D. Roelofs, J. N. M. Mol, and J. M. Kooter (2001) Transcriptional and posttranscriptional gene silencing are mechanistically related. Curr. Biol. 11: 436-440.
DOI
ScienceOn
|
29 |
Tijsterman, M., R. F. Kettling, O. L. Kristy, S. Titia, and R. H. Plasterk (2002) RNA helicase MUT-14-dependent gene silencing triggered in C. elegans by short antisense RNAs. Science 295: 694-697.
DOI
|
30 |
Maeda, I., Y. Kohara, M. Yamamoto, and A. Sugimoto (2001) Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr. Biol. 11: 171-176.
DOI
ScienceOn
|
31 |
Khan, S., G. Situ, K. Decker, and C. J. Schmidt (2003) GoFigure: automated gene ontology annotation. Bioinformatics 19: 2484-2485.
DOI
ScienceOn
|
32 |
Piano, F, A. J. Schetter, D. G. Morton, K. C. Gunsalus, V. Reinke, S. K. Kim, and K. J. Kemphues (2002) Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans. Curr. Biol. 12: 1959-1965.
DOI
ScienceOn
|
33 |
The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nature Genetics 25: 25-29.
DOI
ScienceOn
|