• Korean Journal of Environmental Biology
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• v.36 no.4
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• pp.626-637
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• 2018

In this study, a series of survey were conducted to identify the distribution patterns of macrobenthos at the Bongam sand tidal flat in Masan Bay. We collected macrobenthos at 9 sampling sites twice in June and September of every year from 2012 to 2017 using a box core sampler (collecting area, $0.025m^2$). There was a total of 50 species with a community density of $6,388ind.m^{-2}$ and a biomass of $313.9g\;wet\;m^{-2}$ during the study period. Polychaetes had the highest number of species and density among the macrofauna, but the mollusks had the largest biomass. The number of species ranged from 10 to 25 during study period but increased to over 20 species in 2014. The density which ranged from $1,508ind.m^{-2}$ to $12,008ind.m^{-2}$ rapidly increased in 2015. The dominant species were all polychaetes such as Heteromastus filiformis, Prionospio japonicus, Hediste diadroma, and Neanthes succinea. The mean diversity index ranged from 1.2 to 1.9, richness index from 1.2 to 2.4, and evenness index from 0.5 to 0.9. From the cluster analysis results, there was a spatial difference in the similarity of faunal composition of macrobenthos and this pattern was maintained throughout the study period, that is, the temporal similarities were higher than the spatial similarities. There was a change in community composition from June 2014 to June 2015 in most of the sampling sites. During this time, the dominant species also changed from H. filiformis and N. succinea to H. filiformis and H. diadroma. The density of opportunistic species such as Capitella capitata and Polydora ligni decreased compared to the early 2000s while the population of H. diadroma increased from 2015. There was little ecological information on H. diadroma such as when and where this species occurred.

• Journal of Korean Society of Environmental Engineers
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• v.32 no.3
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• pp.227-233
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• 2010

This study examined microbial community structures (MCSs) according to environmental factors through DGGE analysis and comparison in various soils collected from near army bases and gas stations. As a result, the similarities based on DGGE band profiles showed the closer relationship in regional properties than in pollution characteristics, probably due to the degree of weak contamination. The highly contaminated samples with oil revealed low MCS similarities with others in the same region and very low with all the other samples in the other regions. Thus the microbial community structure would more be affected by region-based natural factors than by contamination factors in case of minor pollution. All the dominant culturable bacterial species were involved in firmicutes or high GC Gram+ in a major portion of soil samples and the highly oil-contaminated samples contained Arthrobacter, Bacillus, Methylobacterium, Clavibacter, Streptomyces and Nocardia as reported genera, and Leifsonia as a unreported genus.

• Journal of Plant Biology
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• v.36 no.1
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• pp.91-96
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• 1993

Phycoerythrins from the ceramiaceous red algae Campylaephora crassa (Okamura) Nakamura and related species, C. hypnaeoides J. Agardh and Ceramium kondoi Yendo, were investigated for absorption spectra, protein bands by gel electrophoresis and antigenic reactivity to anti-phycoerythrin using Ouchterlony double diffusion and immunoblot. Similarities in absorption spectra, showing peaks at ca. 566 nm>534 nm>495 nm, were found between C. crassa and Cm. kondoi, while C. hypnaeoides differed slightly. There were no differences in fluorescence emission spectra and protein bands between C. crassa and related species tested. Since Ouchterlony double diffusion, however, showed that phycoerythrins from C. crassa and Cm. kondoi were similar in antigenic reactions, and differed from that of C. hypnaeoides, the taxonomic position of C. crassa should be reinvestigated using other experimental approaches.

• Animal Systematics, Evolution and Diversity
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• v.14 no.3
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• pp.279-291
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• 1998

To clarify the spider fauna of Geojedo Island, a field survery was conducted in August, 1997. As a result, 92 species belonging to 56 genera of 20 families were collected. Identified spider are composed of 6.60% Palaearctic, 7.70% Holarctic, 2.20% Oriental, 3.30% cosmopolitan species. Spiders of Theridiidae, Araneidae and Salticidae were dominant, 82(90.1%) and 75 species(82.4%) of spiders were found in common with Japan, China, respectively. Faunal similarities between Geojedo island and Deogjeong Archipelago, Chejudo Island, Ulleungdo Island, Chindo Island, Paiklyeongdo Island and Kogeumdo Island are discussed.

• ALGAE
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• v.33 no.3
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• pp.215-229
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• 2018

In this study, the phylogenetic relationships among the genera Alsidium C. Agardh and Bryothamnion $K{\ddot{u}}tzing$ were investigated. Phylogenetic analyses using the plastid-encoded markers rbcL, psbA, and the mitochondrial barcode region (COI-5P) resolved a well-supported clade that included the species Alsidium corallinum, Bryothamnion seaforthii, and B. triquetrum. Our results indicated that taxonomic recognition of the genus Bryothamnion is not supported and two species of Bryothamnion are reallocated to Alsidium. A reexamination of the morphological definition of Alsidium is provided with an updated diagnosis of the genus and a morphology-based comparison of species that are currently circumscribed under this generic name. Furthermore, we reviewed morphological differences and similarities between Alsidium and the genus Digenea, both belonging to the tribe Alsidieae, discussing the most relevant morphological characters.

• Animal Systematics, Evolution and Diversity
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• v.39 no.4
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• pp.289-294
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• 2023

We discovered a halacarid mite species, Isobactrus tuberculatus Abé, 1996, inhabiting marine plastic debris on the coast of Jeju Island, Korea. The key characteristics of these Korean specimens were consistent with those in the original description of specimens from Hokkaido, Japan, including the presence of tuberculate membranous cuticles between the anterior and posterior dorsal plates, fusion of the posterior epimeral plates I and II, tibia II with a bipectinate seta, tibiae III and IV each with five setae, and a pair of subgenital setae in females. However, two small morphological differences were noted: the distance between the anterior and posterior dorsal plates was shorter than that in Japanese specimens, and the location of dorsal seta-2 was closer to the anterior dorsal plate in Korean specimens. We herein provide detailed illustrations of I. tuberculatus, based on the Korean specimens, with a brief taxonomic comment on the similarities among allied congeneric species. The genus Isobactrus is first reported in Korea.

• Journal of Species Research
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• v.6 no.2
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• pp.129-140
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• 2017

During a comprehensive investigation of indigenous prokaryotic species in Korea, a total 31 bacterial strains assigned to the class Alphaproteobacteria were isolated from diverse environmental habitats including freshwater, seawater, brackish water, ginseng soil, plant roots, natural caves, and tidal flats. Based on their high 16S rRNA gene sequence similarities(>99.1%) and formation of robust phylogenetic clades with the closest type species, each strain was assigned to an independent and predefined bacterial species. Because there were no published or official reports regarding the isolation of these 31 species in Korea, this study identified three species in two genera in the order Caulobacterales, 12 species in 10 genera in the order Rhodobacterales, three species in two genera in the order Rhizobiales, two species in two genera in the order Rhodospirillales and 11 species in seven genera, all in the order Sphingomonadaceae within the Alphaproteobacteria are reported as new alphaproteobacterial species in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.

• Journal of Species Research
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• v.8 no.2
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• pp.161-175
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• 2019

During a comprehensive investigation of indigenous prokaryotic species in Korea, a total of 46 bacterial strains assigned to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria, and Epsilonproteobacteria were isolated from a diversity of habitats including freshwater, seawater, brackish water, ginseng soil, plant roots, natural caves, and tidal flats. Based on their high 16S rRNA gene sequence similarities (>98.7%) and formation of strongly-supported phylogenetic clades with the closest type species, each strain was assigned to an independent, predefined bacterial species. Since there were no published or official reports regarding the isolation of these 46 species in Korea, here we report them as new species to Korea: 34 species in 14 families in the five orders of Alphaproteobacteria, 10 species in five families in the three orders of Betaproteobacteria, one species of Deltaproteobacteria and one species of Epsilonproteobacteria. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.

• Korean Journal of Medicinal Crop Science
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• v.21 no.3
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• pp.165-173
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• 2013

The fruits of Schisandra chinensis have been used as an edible ingredient and traditional medicine in Korea. Due to morphological similarities of dried mature fruits, the correct identification of S. chinensis from other closely related Schisandrae species is very difficult. Therefore, molecular biological tools based on genetic analysis are required to identify authentic Schisandrae Fructus. Random amplifed polymorphic DNA (RAPD) and Sequence Characterized Amplified Region (SCAR) were used to develop an easy, reliable and reproducible method for the authentication of these four species. In this paper, we developed several RAPD-derived species specific SCAR markers and established a multiplex-PCR condition suitable to discriminate each species. These genetic markers will be useful to distinguish and authenticate Schisandrae Fructus and four medicinal plants, S. chinensis, S. sphenanthera, S. repanda and K. japonica, in species level.

• Journal of Species Research
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• v.6 no.2
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• pp.119-128
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• 2017

Within a comprehensive, widescale investigation of indigenous prokaryotic species in Korea, 29 bacterial strains in the phylum Bacteroidetes were isolated from diverse environmental habitats that included soil, plant roots, natural caves, tidal flats, freshwater from lakes, and seawater. Based on their high 16S rRNA gene sequence similarities (>99.1%) and the formation of robust phylogenetic clades with the closest type species, each strain likely belonged to an independent and predefined bacterial species. There are no publications or official reports of the isolation of these 29 species in Korea. Our study provides strong evidence that seven species in three genera in the order Cytophagales, 15 species in 13 genera in the order Flavobacteriales and seven species in five genera in the order Sphingobacteriales, all within the phylum Bacteriodetes, are new reports of bacterial species in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.