A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea |
Kim, Kyung Hyun
(Department of Life Science, Chung-Ang University)
Yoon, Jung-Hoon (Department of Food Science and Biotechnology, Sungkyunkwan University) Kim, Seung-Bum (Department of Microbiology, Chungnam National University) Jahng, Kwang-Yeop (Department of Life Sciences, Chonbuk National University) Cho, Jang-Cheon (Department of Biological Sciences, Inha University) Joh, Ki-seong (Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies) Cha, Chang-Jun (Department of Systems Biotechnology, Chung-Ang University) Seong, Chi-Nam (Department of Biology, Sunchon National University) Bae, Jin-Woo (Department of Biology, Kyung Hee University) Im, Wan-Taek (Department of Biotechnology, Hankyong National University) Jeon, Che Ok (Department of Life Science, Chung-Ang University) |
1 | Ferla, M.P., J.C. Thrash, S.J. Giovannoni and W.M. Patrick. 2013. New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability. PLoS ONE 8:e83383 DOI |
2 | Felsenstein, J. 2002. PHYLIP (phylogeny inference package), version 3.6a, Seattle: Department of genetics, University of Washington, Seattle, WA, USA. |
3 | Fredricks, D.N. 2006. Introduction to the Rickettsiales and other intracellular prokaryotes. In The Prokaryotes: A handbook on the biology of Bacteria. 3rd edition edition. Edited by Dworkin M, Falkow S, Rosenberg E, Schleifer KH and Stackebrandt E. New York, Springer. |
4 | Giovannoni, S.J., H.J. Tripp, S. Givan, M. Podar, K.L. Vergin, D. Baptista, L. Bibbs, J. Eads, T.H. Richardson, M. Noordewier, MS. Rappe, J.M. Short, J.C. Carrington and E.J. Mathur. 2005. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242-1245. DOI |
5 | Kaneko, T., Y. Nakamura, S. Sato, K. Minamisawa, T. Uchiumi, S. Sasamoto, A. Watanabe, K. Idesawa, M. Iriguchi, K. Kawashima, M. Kohara, M. Matsumoto, S. Shimpo, H. Tsuruoka, T. Wada, M. Yamada and S. Tabata. 2002. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Ressearch 9:189-197. DOI |
6 | Kaneko, T., Y. Nakamura, S. Sato, E. Asamizu, T. Kato, S. Sasamoto, A. Watanabe, K. Idesawa, A. Ishikawa, K. Kawashima, T. Kimura, Y. Kishida, C. Kiyokawa, M. Kohara, M. Matsumoto, A. Matsuno, Y. Mochizuki, S. Nakayama, N. Nakazaki, S. Shimpo, M. Sugimoto, C. Takeuchi, M. Yamada and S. Tabata. 2000. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Ressearch 7:331-338. DOI |
7 | Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. International Journal of Systematic and Evolutionary Microbiology 62:716-721. DOI |
8 | Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press, Cambridge, New York. |
9 | Lee, H.J., S.E. Jeong, M.-S. Cho, S.H. Kim, S.-S. Lee, B.-H. Lee and C.O. Jeon. 2014. Flavihumibacter solisilvae sp. nov., isolated from forest soil. International Journal of Systematic and Evolutionary Microbiology 64:2897-2901. DOI |
10 | Matteo, P., J. Ferla, T. Cameron, J. Stephen and M. Wayne. Patrick. 2013. New rRNA Gene-Based Phylogenies of the Alphaproteobacteria provide perspective on major Groups, mitochondrial ancestry and mhylogenetic Instability. PLoS One 8(12): e83383. DOI |
11 | Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425. |
12 | Skorpil, P. and W.J. Broughton. 2006. Molecular interactions between Rhizobium and legumes. Progress Mololcular Subcell Biolology 41:143-164. |
13 | Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882. DOI |