• Title/Summary/Keyword: Site Constants

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NMR Hydrogen Exchange Study of DNA Duplex Containing the Consensus Binding Site for Human MEIS1

  • Choi, Seo-Ree;Jin, Ho-seong;Seo, Yeo-Jin;Lee, Joon-Hwa
    • Journal of the Korean Magnetic Resonance Society
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    • v.24 no.4
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    • pp.117-122
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    • 2020
  • Transcription factors are proteins that bind specific sites or elements in regulatory regions of DNA, known as promoters or enhancers, where they control the transcription or expression of target genes. MEIS1 protein is a DNA-binding domain present in human transcription factors and plays important roles in various biological functions. The hydrogen exchange rate constants of the imino protons were determined for the wild-type containing the consensus DNA-binding site for the MEIS1 and those of the mutant DNA duplexes using NMR spectroscopy. The G2A-, A3G- and C4T-mutant DNA duplexes lead to clear changes in thermal stabilities of these four consensus base pairs. These unique dynamic features of the four base pairs in the consensus 5'-TGAC-3' sequence might play crucial roles in the effective DNA binding of the MEIS1 protein.

Vibration Velocity of Rock Mass Boundary Surface (암반 경계표면의 진동속도)

  • 김일중;김영석
    • Explosives and Blasting
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    • v.15 no.4
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    • pp.11-17
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    • 1997
  • Impulsive vibration velocity is monitored at the surface and the boundary surface of rocks as various impulsive forces of horizontal and vertical directions were given to rocks which had difference in uniaxial compressive strength for investigate to the vibration velocity of rocks according to the impulsive direction and the monitoring site. The vibration velocity of the boundary surface of rocks was about 2.9 times or much larger than that of the surface at the same scaled distance in the case of horizontal impulsive forces, and was above 4.2 times in the case of vertical impulsive forces. The attenuation exponents of the vibration velocity equations in the surface and the boundary surface of rocks make a vast difference with the impulsive directions, but is makes little difference in the case of the same impulsive direction. The ratio of vibration constants of the surface to the boundary surface of rocks is that square and cube root scaled equation is a range of 2.7∼3.0 and 4.9∼5.0 respectively in the case of horizontal impulsive forces, and is a range of 4.2∼5.7 and 7.7∼11.5 respectively in the case of vertical impulsive forces.

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Binding Characteristics of Molecularly Imprinted Polymers for Ibuprofen Enantiomers (아이뷰프로펜 이성질체에 대한 molecularly imprinted polymers의 binding 특성)

  • 신명근;조규헌
    • KSBB Journal
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    • v.14 no.3
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    • pp.273-278
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    • 1999
  • The molecularly imprinted polymers(MIPs) synthesized at various polymerization conditions were examined as ibuprofen receptors in terms of binding characteristics. The 4-vinylpyridine polymers had 1.2 times higher adsorption capability for (S)-(+)-ibuprofen than the methacrylic acid polymers. The methacrylic acid polymers synthesized by UV radiation had 1.9 times higher selectivity for (S)-(+)-ibuprofen compared to those by thermal initiation. Effects of various solvents for binding were also examined in this research. According to the Scatchard analysis, the (S)-(+)-ibuprofen artificial receptors had two different kinds of binding sites for (S)-(+)-ibuprofen while having only single kind of binding site for ketoprofen. The binding sites of (S)-(+)-ibuprofen, n were calculated as 4.3~4.9 $\mu$mol/g and the dissociation constants, $K_D$ were 0.68 mM for the specific binding.

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A Dry-Spot Model for the Prediction of Critical Heat Flux in Water Boiling in Bubbly Flow Regime

  • Ha, Sang-Jun;No, Hee-Cheon
    • Proceedings of the Korean Nuclear Society Conference
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    • 1997.10a
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    • pp.546-551
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    • 1997
  • This paper presents a prediction of critical heat flux (CHF) in bubbly flow regime using dry-spot model proposed recently by authors for pool and flow boiling CHF and existing correlations for forced convective heat transfer coefficient, active site density and bubble departure diameter in nucleate boiling region. Without any empirical constants always present in earlier models, comparisons of the model predictions with experimental data for upward flow of water in vertical, uniformly-heated round tubes are performed and show a good agreement. The parametric trends of CHF have been explored with respect to variations in pressure, tube diameter and length, mass flux and inlet subcooling.

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A Partition Function for Liquid Metals (液體金屬의 常態和)

  • Kim, Wan-Kyue
    • Journal of the Korean Chemical Society
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    • v.6 no.1
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    • pp.36-46
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    • 1962
  • The author assumes that pure liquid metal is composed of molecular oscillators whose energy states are classified into two subgroups, i.e., A and B states, each being accesible to either one of the two sorts of lattice sites. The partition function involves constants characteristic of substance, which are obtainable from the Debye characteristic temperature assigned to its solid state. Calculation has been made for the various thermodynamic properties such as the vapor pressure, the entropy, and the heat capacity of liquid metals of GroupⅠelements over the temperature range from the melting points to the boiling points. The theoretical values thus obtained are in good accordances with those observed, within experimental error, although a slight derivation is observed in the atomic heat capacity.

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The magnetic properties of ferrite for chip-induotor about 2GMz (2GHz 대역 Chip-Inductor용 자성재료의 자기적 특성)

  • 정승우;김태원;최우성
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 1999.11a
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    • pp.205-208
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    • 1999
  • We have studied properties(crystal structure, density, absorption, contraction, initial permeability, and permeability) of Ba$\sub$0.2/Me$\sub$0.31/Fe$\sub$0.49/(Me:Ni$\sub$1-x/, Cu$\sub$x/ x=0~1) ferrites with various Me site, because of development of magnetic materials for inductor. As a results of the density, absorption rate, and shrinkage rate, the sintering temperature of Ba$\sub$0.2/ Me$\sub$0.31/ FEesub 0.49/(Me:Ni$\sub$1-x/ x=0.25, 0.75) had got over 1100$^{\circ}C$ for 3 hours. According to SEM images, the configurations of grain were hexagonal, Increasing the sintering temperature, initial Permeability increased. The complex permeabilities as a function of for several MHz showed constants.

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Phase Shift Analysis and Phase Identification for Distribution System with 3-Phase Unbalanced Constant Current Loads

  • Byun, Hee-Jung;Shon, Sugoog
    • Journal of Electrical Engineering and Technology
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    • v.8 no.4
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    • pp.729-736
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    • 2013
  • Power grids are large complicated networks in use around. An absolute phase value for a particular unknown-phase line at a local site should be identified for the operation and management of a 3-phase distribution network. The phase shift for a specific point in the line, as compared with a phase reference point at a substation, must be within a range of ${\pm}60^{\circ}$ for correct identification. However, the phase shift at a particular point can fluctuate depending on the line constants, transformer wiring method, line length, and line amperage, etc. Conducted in this study is a theoretical formulation for the determination of phase at a specific point in the line, Simulink modeling, and analysis for a distribution network. In particular, through evaluating the effects of unbalanced current loads, the limitations of the present phase identification methods are described.

Preferential Peroxidase Activity of Prostaglandin Endoperoxide H Synthase for Lipid Peroxides

  • Yun, Seol-Ryung;Han, Su-Kyong;Song, In-Seok
    • Proceedings of the Korean Society of Applied Pharmacology
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    • 2001.11a
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    • pp.94-94
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    • 2001
  • Prostaglandin endoperoxide H synthase (PGHS) catalyzes the committed step in prostaglandins and thromboxane A$_2$-- oxygenation of arachidonic acid to the hydroperoxy endoperoxide PGG$_2$, followed by reduction PGG$_2$to the alcohol PGH$_2$. The two reactions by PGHS -- cyclooxygenase and peroxidase -- occur at distinct but structurally and functionally interconnected sites. The peroxidase reaction occurs at a heme-containing active site located near the protein surface. The cyclooxygenase reaction occurs in a hydrophobic channel in the core of the enzyme. Initially a peroxide reacts with the heme group, yielding Compound I and an alcohol derived from the oxidizing peroxide. Compound I next undergoes an intramolecular reduction by a single electron traveling from Tyr385 along the peptide chain to the proximal heme ligand, His388, and finally to the heme group. Following the binding of arachidonic acid, Tyr385 tyrosyl radical initiates the cyclooxygenase reaction by abstracting the 13-pro(5) hydrogen atom to give an arachidonyl radical, which sequentially reacts with two molecules of oxygen to yield PGG$_2$. In order to characterize PGHS peroxidase active site, we examined various lipid peroxides with purified recombinant ovine PGHS proteins and determined the rate constants. The results have shown that twenty-carbon unsaturated fatty acid hydroperoxides have similar efficiency in peroxidation by PGHS, irrespective of either the location of hydroperoxy group or the number of double bonds. It was also confirmed by the subsequent study with PGHS peroxidase active site mutants.

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Role of the Salt Bridge Between Arg176 and Glu126 in the Thermal Stability of the Bacillus amyloliquefaciens ${\alpha}$-Amylase (BAA)

  • Zonouzi, Roseata;Khajeh, Khosro;Monajjemi, Majid;Ghaemi, Naser
    • Journal of Microbiology and Biotechnology
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    • v.23 no.1
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    • pp.7-14
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    • 2013
  • In the Bacillus amyloliquefaciens ${\alpha}$-amylase (BAA), the loop (residues 176-185; region I) that is the part of the calcium-binding site (CaI, II) has two more amino acid residues than the ${\alpha}$-amylase from Bacillus licheniformis (BLA). Arg176 in this region makes an ionic interaction with Glu126 from region II (residues 118-130), but this interaction is lost in BLA owing to substitution of R176Q and E126V. The goal of the present work was to quantitatively estimate the effect of ionic interaction on the overall stability of the enzyme. To clarify the functional and structural significance of the corresponding salt bridge, Glu126 was deleted (${\Delta}$E126) and converted to Val (E126V), Asp (E126D), and Lys (E126K) by site-directed mutagenesis. Kinetic constants, thermodynamic parameters, and structural changes were examined for the wild-type and mutated forms using UV-visible, atomic absoption, and fluorescence emission spectroscopy. Wild-type exhibited higher $k_{cat}$ and $K_m$ but lower catalytic efficiency than the mutant enzymes. A decreased thermostability and an increased flexibility were also found in all of the mutant enzymes when compared with the wild-type. Additionally, the calcium content of the wild-type was more than ${\Delta}E126$. Thus, it may be suggested that ionic interaction could decrease the mobility of the discussed region, prevent the diffusion of cations, and improve the thermostability of the whole enzyme. Based on these observations, the contribution of loop destabilization may be compensated by the formation of a salt bridge that has been used as an evolutionary mechanism or structural adaptation by the mesophilic enzyme.

A Study on the Effect of Organic Permeant on Permeability of a Natural Clay (유기투과물이 자연점토의 투수성에 미치는 영향에 대한 연구)

  • 전상옥;장병우;우철웅;박영곤
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.39 no.4
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    • pp.98-105
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    • 1997
  • Compacted clay materials are often used to form barriers for waste disposal by means of landfill. The performance of clay barrier depends on its permeability characteristics under the site environments. The study discusses permeability characteristics of 4 types of permeants through a compacted clayey soil. Permeabilities are measured using the modified rigid-wall permeater and with water, PEG, Ethanol, and TCE, ranging 80 to 3.4 of dielectric constants. Results of the study are as follows : 1) Absolute permeabilities of Ethanol and TCE that their dielectric constants are lower than that of water are $K=1.0{\times} 10^{-12} cm^2$, and $5.8{\times} 10^{-12} cm^2$, respectively, that is, 1.67, and 9.67 times of permeability of water, respectively. Absolute permeability and dielectric constant of water are $K=6{\times} 10^{-13} cm^2$, and 80, respectively. 2) Changes in absolute permeability of Ethanol and TCE converge to a constant after 3.5 pore volume of permeant flows through the clay sample. This can be explained that diffuse double layer of clay is no longer reacted with permeants and contracted their pores. However there is no change in absolute permeability when water is used as a per-meant. 3) It is found that absolute permeability in reversely proportional to the value of dielectric constant of the permeants. Change in absolute permeability of the permeants with 40 or over of dielectric constant is not significant. However change in absolute permeability of the permeant with 30 or lower dielectric constant is abruptly increased. 4) A lower absolute permeability of PEG is found because of its high viscosity.

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