• Journal of Korean Society of Forest Science
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• v.97 no.2
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• pp.171-180
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• 2008

The characterization of tree species and forest stand conditions is useful in the planning of activities aimed to conserve biodiversity. The main objective of this study was to describe tree species diversity, species composition and stand structure of tropical deciduous forests distributed in three regions in Myanmar. Forest inventory was conducted in the Oktwin teak bearing forest, the Letpanpin community forest and Alaungdaw Kathapa National Park. According to the Jackknife estimator of species richness, 85 species (${\pm}18.16$), 70 species (${\pm}5.88$) and 186 species (${\pm}17.10$) belonging to 31 families were found in the Oktwin teak bearing forest, 33 families in Letpanpin community forest and 53 families in Alaungdaw Kathapa national park, respectively. Shannon's diversity indices were significantly different among the forests (p<0.05). It ranged from 3.36 to 4.36. Mean tree density (n/ha) of the Oktwin teak bearing forest, Letpanpin community forest and Alaungdaw Kathapa National Park were 488 (${\pm}18.6$), 535 (${\pm}15.6$) and 412 (${\pm}14.1$), while basal areas per hectare were $46.96m^2({\pm}3.23),\;49.01m^2({\pm}5.08)\;and\;60.03m^2({\pm}3.88)$, respectively. At the family level, Verbenaceae, Myrtaceae and Combretaceae occupied the highest importance value index, while at the species level it was Tectona grandis, Lagerstoremia speciosa and Xylia xylocarpa.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.19 no.4
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• pp.29-44
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• 2016

This study was carried out to the structure of plant community, and ecological succession sere of forest ecosystem in Soguemgang Valley, Odaesan National Park. Fifteenth plots(size is $20m{\times}20m$) were set up and the results analyzed by DCA which is one of the ordination technique showed that the plant communities were divided into seven groups which area community I(Quercus variabilis-Pinus densiflora community), II(Pinus densiflora community), III(Pinus densiflora-Quercus variabilis community), IV(Pinus densiflora-Quercus serrata community), V(Quercus serrata community), VI(Pinus densiflora-Deciduous broad-leaved plant community), VII(Cornus controversa-Carpinus laxiflora community). Shannon diversity index per $400m^2$ was to 0.7777 to 1.1440 and the age of Pinus densiflora 86 years old, Quercus variabilis was ranged from 66 to 87 years old, Quercus serrata was ranged from 51 to 62 years old, Carpinus laxiflora was 94 years old. In 2013, the succession trend was predicted Pinus densiflora${\rightarrow}$Quercus variabilis, Quercus serrata ${\rightarrow}$Cornus controversa, Carpinus laxiflora. The ecological sucession progress has declined power of the Pinus densiflora and the increased power of the deciduous broad-leaved and Quercus spp. in Soguemgang Valley, Odaesan National Park. Quercus serrata and Quercus variabilis communities that judged Pinus densiflora were progressing by direction of landform. The southern slopes vegetation were progressing for Quercus variabilis, the northern slopes vegetation were progressing for Quercus serrata. In flat Valley, mainly native species of Cornus controversa, Carpinus laxiflora are predicted ecological succession for deciduous broad-leaved tree community.

• Ocean and Polar Research
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• v.33 no.1
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• pp.85-97
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• 2011

The tidal flats of Korea today have reduced by 40% in size compared to 1964. To manage this important habitat properly, development of well-organized and nationwide-applicable grading systems is required. There have been several assessment systems proposed previously in Korea, but they are critically flawed in that selected biological indicators are not adequate and grading criteria are obscure and arbitrary. We reviewed the indicators used in these previous evaluation systems (e.g., diversity indices, quantity and quality of benthic macrofauna, halophytes, water birds, etc.) and subsequently proposed new indicators and an improved grading scheme. For the quantitative assessment of macrobenthic community, biomass reflecting production and ecosystem function is recommended over density, which is much less discriminatory among habitats. Of biodiversity indices used, within-, between-habitat and regional biodiversity indices that accurately reflect sampling efforts are suggested. In addition, we proposed to include species rarity, ecosystem engineers, and the ecological quality index ISEP (Inverse function of Shannon-Wiener Evenness Proportion). As for halophytes, their low spatial coverage on benthic habitat suggests that their presence can be used as an ecological indicator of benthic habitat, regardless of their protective status. We stress the need to introduce 1) quantile approach for quantitative indicators (e.g., diversity, biomass, etc.) in relation to grading, 2) presence-absence approach for spatial or aggregate indicators (e.g., boundaries of halophytes and feeding ground of water birds) and 3) benthic habitat mapping that combines all of these indicators.

• Journal of Microbiology and Biotechnology
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• v.30 no.6
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• pp.804-810
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• 2020

The profitability of the dairy and beef industries is largely affected by the actually achieved reproductive efficiency. Although a large proportion of cows worldwide are bred by artificial insemination (AI) services, many potential factors affecting the outcome of pregnancy by AI remain to be addressed. In the present study, we investigated the vaginal microbiota by high-throughput sequencing of 16S rRNA gene and analyzed their association with differential pregnancy outcomes (i.e., pregnant vs. nonpregnant) of multiple AI services in dairy cows. Sequencing of the V3-V4 region totally produced 512,046 high-quality sequences that were computationally clustered into 2,584 operational taxonomic units (OTUs). All OTUs were taxonomically assigned to 10 bacterial phyla. There were statistically significant differences among the three AI service times (T1, T2 and T3) with respect to the Shannon index and number of observed OTUs (p < 0.05). Bray-Curtis distance-based PCoA analysis also revealed that T2 group could be significantly distinguished from T1 and T3. However, no significant difference between the pregnant and nonpregnant cows was found in confidence regarding both alpha diversity and beta diversity. These results could help us better understand the possible influence of vaginal microbial community on pregnancy outcomes of AI service in cows.

• The Korean Journal of Quaternary Research
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• v.13 no.1
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• pp.91-98
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• 1999

The effect of the relative abundances of planktonic foraminifera juveniles on the climatic and oceanographic history interpretations is documented for the first time (as far as we know) by use of the year-long time-series sediment trap samples. Statistical correlation analysis suggests that many climatic and oceanographic variables such as sinking flux (total number) of planktonic foraminifera, relative abundance of some climatic indicator species G. bulloides and N. dutertrei, temperature, and salinity do not show any significant correlations with the relative abundance of planktonic foraminifera juveniles. However, planktonic foraminifera juveniles show moderate correlations with species diversity indices (species richness, Shannon-Wiener index, and Equitability). These indicate that the juveniles do not affect the relative abundances(%) of species compositions but affect the species diversity indices. Based on this one-year trap result, special care is required when we use species diversity indices for the interpretations of paleoceanography when the juveniles are excluded from total planktonic foraminiferal countings.

• Journal of Ecology and Environment
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• v.38 no.1
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• pp.95-107
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• 2015

Because an ecological community consists of diverse species that vary nonlinearly with environmental variability, its dynamics are complex and difficult to analyze. To investigate temporal variations of benthic macroinvertebrate community, we used the community data that were collected at the sampling site in Baenae Stream near Busan, Korea, which is a clean stream with minimum pollution, from July 2006 to July 2013. First, we used a self-organizing map (SOM) to heuristically derive the states that characterizes the biotic condition of the benthic macroinvertebrate communities in forms of time series data. Next, we applied the hidden Markov model (HMM) to fine-tune the states objectively and to obtain the transition probabilities between the states and the emission probabilities that show the connection of the states with observable events such as the number of species, the diversity measured by Shannon entropy, and the biological water quality index (BMWP). While the number of species apparently addressed the state of the community, the diversity reflected the state changes after the HMM training along with seasonal variations in cyclic manners. The BMWP showed clear characterization of events that correspond to the different states based on the emission probabilities. The environmental factors such as temperature and precipitation also indicated the seasonal and cyclic changes according to the HMM. Though the usage of the HMM alone can guarantee the convergence of the training or the precision of the derived states based on field data in this study, the derivation of the states by the SOM that followed the fine-tuning by the HMM well elucidated the states of the community and could serve as an alternative reference system to reveal the ecological structures in stream communities.

• Asian-Australasian Journal of Animal Sciences
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• v.28 no.4
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• pp.584-591
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• 2015

This study characterized the fecal bacterial community structure and inter-individual variation in 30-week-old Duroc pigs, which are known for their excellent meat quality. Pyrosequencing of the V1-V3 hypervariable regions of the 16S rRNA genes generated 108,254 valid reads and 508 operational taxonomic units at a 95% identity cut-off (genus level). Bacterial diversity and species richness as measured by the Shannon diversity index were significantly greater than those reported previously using denaturation gradient gel electrophoresis; thus, this study provides substantial information related to both known bacteria and the untapped portion of unclassified bacteria in the population. The bacterial composition of Duroc pig fecal samples was investigated at the phylum, class, family, and genus levels. Firmicutes and Bacteroidetes predominated at the phylum level, while Clostridia and Bacteroidia were most abundant at the class level. This study also detected prominent inter-individual variation starting at the family level. Among the core microbiome, which was observed at the genus level, Prevotella was consistently dominant, as well as a bacterial phylotype related to Oscillibacter valericigenes, a valerate producer. This study found high bacterial diversity and compositional variation among individuals of the same breed line, as well as high abundance of unclassified bacterial phylotypes that may have important functions in the growth performance of Duroc pigs.

• Journal of Microbiology and Biotechnology
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• v.23 no.6
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• pp.739-749
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• 2013

The seasonal and spatial diversity of picocyanobacteria (Pcy) in lakes of the Great Mazurian Lakes (GLM) system was examined by DGGE analysis of molecular markers derived from the 16S-23S internal transcribed spacer (ITS) of the ribosomal operon and the phycocyanin operon (cpcBA-IGS). The study of nine lakes, ranging from mesotrophy to hypereutrophy, demonstrated seasonal variance of Pcy. The richness and Shannon diversity index calculated on the basis of both markers were higher in spring and lower in early and late summer. No statistically significant relationships were found between the markers and trophic status of the studied lakes or Pcy abundance. There were, however, statistically significant relationships between the diversity indices and sampling time. The analysis pointed to a different distribution of the two markers. The ITS marker exhibited more unique sequences in time and space, whereas a greater role for common and ubiquitous sequences was indicated by the cpcBA-IGS data. Examination of the Pcy community structure demonstrated that communities were grouped in highly similar clusters according to sampling season/time rather than to the trophic status of the lake. Our results suggest that time is more important than trophic status in shaping the diversity and structure of Pcy communities. The seasonal changes in picocyanobacteria and differences in diversity and community structures are discussed in the context of well-established ecological hypotheses: the PEG model, intermediate disturbance hypothesis (IDH), and horizontal gene transfer (HGT).

• Journal of Korean Society on Water Environment
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• v.36 no.1
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• pp.36-47
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• 2020

Three large scale weirs were constructed 2010 - 2011 in the Namhan river, Korea. The purpose of this study was to investigate the spatial distribution of benthic macroinvertebrates and the influence of environmental factors at the weirs 2014 - 2015. The number of species was higher in the riparian zone than in the transition or the limnetic zone. This seems to be because of the diversification of microhabitats and food sources according to the development of littoral zones. From the riparian zone to the limnetic zone, the individual abundance proportion of gathering collectors among functional feeding groups decreased, and that of filtering collectors increased. In the limnetic zone, sprawlers and climbers among habitat orientation groups decreased, and burrowers increased. This means that coarse particulate organic matter originated from land or riparian zone was transformed to fine particulate organic matter in the limnetic zone. Asian clam (Corbicula fluminea) and chironomids were dominant species based on individual abundance. Asian clam, a major taxon considering biomass, was abundant toward the limnetic zone. This is becasue of the shallow depth, suitable water current, slightly coarse substrate, and good water quality. There was no significant relationship between the water quality and the characteristics of the benthic macroinvertebrate community because the water quality was spatially not heterogenous. The more influential factors for benthic community were physical factors, especially water depth. Water depth showed a markedly significant correlation with Shannon-Weaver's species diversity (r=-0.90), Margalef's species richness (r=-0.82), and McNaughton's dominance (r=0.86). Water depth showed a positive correlation (r=0.68) with the Kong and Kim BMSI (Bentic Macroinverebrates Streambed Index), and this may be related to the coarse substrate of the limnetic zone.

• Journal of Life Science
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• v.17 no.1 s.81
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• pp.24-30
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• 2007

Inter simple sequence repeat (ISSR) markers were performed in order to analyse the genetic relation-ships of both taxa of Gardenia jasminoides var. radicans and G. jasminoides for. grandifora. Over the 88 fragments, only one locus (ISSR-11-05) was specific to G. jasminoides var. radicans and only one (ISSR-09-05) G. jasminoides for. grandiflora. Although G. jasminoides var. radicans showed low levels of alleles and Shannon's information index than G. jasminoides for. Grandiflora, however, there was not significant differences (p > 0.05). For both taxa the mean genetic diversity of natural populations was higher than that of cultivation populations. It was suggested that domestication processes via artificial selection do not have eroded the high levels of genetic diversity. ISSR markers were more effective in classifying natural populations of wild G. jasminoides in East Asia as well as cultivated G. jasminoides. The information about the phylogenetic relationship of G. jasminoides var. radicans and its closely related species is very valuable of the systematics of genus Gardenia, the origin of cultivated G. jasminoides, and future G. jasminoides breeding.