Characterization of the Fecal Microbial Communities of Duroc Pigs Using 16S rRNA Gene Pyrosequencing |
Pajarillo, Edward Alain B.
(Department of Animal Resources Science, Dankook University)
Chae, Jong Pyo (Department of Animal Resources Science, Dankook University) Balolong, Marilen P. (Department of Animal Resources Science, Dankook University) Kim, Hyeun Bum (Department of Animal Resources Science, Dankook University) Seo, Kang-Seok (Department of Animal Science and Technology, Sunchon National University) Kang, Dae-Kyung (Department of Animal Resources Science, Dankook University) |
1 | Brossard, L., J. -Y. Dourmad, J. Rivest, and J. van Milgen. 2009. Modelling the variation in performance of a population of growing pig as affected by lysine supply and feeding strategy. Animal 3:1114-1123. DOI ScienceOn |
2 | Canibe, N., O. Hojberg, S. Hojsgaard, and B. B. Jensen. 2005. Feed physical form and formic acid addition to the feed affect the gastrointestinal ecology and growth performance of growing pigs. J. Anim. Sci. 83:1287-1302. DOI |
3 | Chun, J., J. -H. Lee, Y. Jung, M. Kim, S. Kim, B. K. Kim, and Y. W. Lim. 2007. EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57:2259-2261. DOI ScienceOn |
4 | Dougal, K., G. de la Fuente, P. A. Harris, S. E. Girdwood, E. Pinloche, R. J. Geor, B. D. Nielsen, H. C. Schott II, S. Elzinga, and C. J. Newbold. 2014. Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing. PLoS One 9(2):e87424. DOI |
5 | Dowd, S. E., Y. Sun, R. D. Wolcott, A. Domingo, and J. A. Carroll. 2008. Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonella-infected pigs. Foodborne Pathog. Dis. 5:459-472. DOI ScienceOn |
6 | Gao, Z., C. H. Tseng, Z. Pei, and M. J. Blaser. 2007. Molecular analysis of human forearm superficial skin bacterial biota. Proc. Natl. Acad. Sci. USA. 104:2927-2932. DOI ScienceOn |
7 | Georgsson, L. and J. Svendsen. 2002. Degree of competition at feeding differentially affects behavior and performance of group-housed growing-finishing pigs of different relative weights. J. Anim. Sci. 80:376-383. DOI |
8 | Guan, L. L., J. D. Nkrumah, J. A. Basarab, and S. S. More. 2008. Linkage of microbial ecological to phenotype: Correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiol. Lett. 288:85-91. DOI ScienceOn |
9 | Hong, S. M., J. H. Hwang, and I. H. Kim. 2012. Evaluation of the effect of low dietary fermentable carbohydrate content on growth performance, nutrient digestibility, blood characteristics, and meat quality in finishing pigs. Asian Australas. J. Anim. Sci. 25:1294-1299. DOI ScienceOn |
10 | Iino, T., K. Mori, K. Tanaka, K. Suzuki, and S. Harayama. 2007. Oscillibacter valericigenes gen. nov., sp. nov., a valerateproducing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam. Int. J. Syst. Evol. Microbiol. 57:1840-1845. DOI ScienceOn |
11 | Ige, B. A. 2013. Probiotics use in intensive fish farming. Afr. J. Microbiol. Res. 7:2701-2711. DOI |
12 | Kim, H. B., K. Borewicz, B. A. White, R. S. Singer, S. Sreevatsan, Z. J. Tu, and R. E. Isaacson. 2011. Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigs. Vet. Microbiol. 153:124-133. DOI ScienceOn |
13 | Kim, H. B., K. Borewicz, B. A. White, R. S. Singer, S. Sreevatsan, Z. J. Tu, and R. E. Isaacson. 2012. Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc. Natl. Acad. Sci. USA. 109:15485-15490. DOI |
14 | Laerke, H. N. and B. B. Jensen. 1999. D-Tagatose has low small intestinal digestibility but high large intestinal fermentability in pigs. J. Nutr. 129:1002-1009. DOI |
15 | Pajarillo, E. A. B., J. P. Chae, M. P. Balolong, H. B. Kim, K. -S. Seo, and Kang D.-K. 2014a. Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines. J. Microbiol. 52:646-651. DOI ScienceOn |
16 | Lamendella, R., J. W. S. Domingo, S. Ghosh, J. Martinson, and D. B. Oerther. 2011. Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol. 11:103-120. DOI ScienceOn |
17 | Lu, X. -M., P. -Z. Lu, and H. Zhang. 2013. Bacterial communities in manures of piglets and adult pigs bred with different feeds revealed by 16 rDNA 454 pyrosequencing. Appl. Microbiol. Biotechnol. 98:2657-2665. |
18 | Mosenthin, R. 1998. Physiology of small and large intestine of swine - Review -. Asian Australas. J. Anim. Sci. 11:608-619. DOI |
19 | Pajarillo, E. A. B., J. P. Chae, M. P. Balolong, H. B. Kim, and D. -K. Kang. 2014b. Assessment of fecal bacterial diversity among healthy piglets during the weaning transition. J. Gen. Appl. Microbiol. 60:140-146. DOI |
20 | Park, J. C., S. H. Lee, J. K. Hong, J. H. Cho, I. H. Kim, and S. K. Park. 2014. Effect of dietary supplementation of procyanidin on growth performance and immune response in pigs. Asian Australas. J. Anim. Sci. 27:131-139. DOI ScienceOn |
21 | Pieper, R., P. Janczyk, V. Urubschurov, U. Korn, B. Pieper, and W. B. Souffrant. 2009. Effect of a single oral administration of Lactobacillus plantarum DSMZ 8862/8866 before and at the time point of weaning on intestinal microbial communities in piglets. Int. J. Food Microbiol. 130:227-232. DOI ScienceOn |
22 | Politis, D. N. and J. P. Romano. 1993. On the sample variance of linear statistics derived from mixing sequences. Stoch. Process. Appl. 45:155-167. DOI ScienceOn |
23 | Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. DOI ScienceOn |
24 | Richards, J. D., J. Gong, and C. F. M. de Lange. 2005. The gastrointestinal microbiota and its role in monogastric nutrition and health with an emphasis on pigs: Current understanding, possible modulations, and new technologies for ecological studies. Can. J. Anim. Sci. 85:421-435. DOI |
25 | Schwab, C. R. 2007. Quantitative and Molecular Genetic Components of Selection for Intramuscular Fat in Duroc Swine. Ph.D. Thesis, Iowa State University, Ames, IA, USA. |
26 | Siavoshian, S., H. M. Biottiere, E. Le Foll, B. Kaeffer, C. Cherbut, and J. P. Galmiche. 1997. Comparison of the effect of short chain fatty acids on the growth and differentiation of human colonic carcinoma cell lines in vitro. Cell Biol. Int. 21:281-287. DOI ScienceOn |
27 | Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. DOI |
28 | Yang, L., G. Bian, Y. Su, and W. Zhu. 2014. Comparison of faecal microbial community of Lantang, Bama, Erhualian, Meishan, Xiaomeishan, Duroc, Landrace, and Yorkshire sows. Asian Australas. J. Anim. Sci. 27:898-906. DOI ScienceOn |
29 | Zhou, X., R. Westman, R. Hickey, M. A. Hansmann, C. K. Kennedy, T. W. Osborn, and L. J. Forney. 2009. Vaginal microbiota of women with frequent vulvovaginal candidiasis. Infect. Immun. 77:4130-4135. DOI ScienceOn |
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