• Journal of Korean Society of Forest Science
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• v.105 no.4
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• pp.414-421
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• 2016

Fourteen Acer pseudosieboldianum populations in South Korea were used to estimate genetic diversity, genetic differentiation and genetic relationships using seven AFLP primer combinations. The average of effective alleles ($A_e$), the proportion of polymorphic loci (%P) and Shannon's diversity index (I) was 1.4, 82.2% and 0.358, respectively. The expected heterozygosity ($H_e$) under Hardy-Weinberg equilibrium was 0.231 and the expected heterozygosity (Hj) from Bayesian inference was 0.253. The level of genetic diversity was moderate compared to those of Genus Acer and lower than those of other species having similar ecological niche and life history. The inbreeding coefficient within populations ($F_{IS}$) from Bayesian method was 0.712 and it could be influenced by selfing or biparental inbreeding to induce homozygote excess. The level of genetic differentiation was 0.107 from AMOVA (${\Phi}_{ST}$) and 0.110 from Bayesian method (${\Phi}^{II}$). The genetic differentiation was lower than those of other species having similar ecological niche and life history. Ulleungdo population had the lowest level of genetic diversity and was genetically the most distinct population from others in the study. We consider that founder effect and genetic drift might be occurred to reduce genetic diversity and then the geographical isolation might interrupt gene flow to aggravate it.

• Korean Journal of Microbiology
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• v.40 no.4
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• pp.307-312
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• 2004

Diversity of the bacterial communities and the relation between community structure and components of waste­water were analyzed by 16S rRNA-based molecular techniques. Clone libraries of the 16S rDNAs from the sludges were constructed by PCR and cloning. The 1,151 clones from a sludge sample of sewage treatment plant were clustered into 699 RFLP phylotypes and the 1,228 clones from the wastewater disposal plant of chemical industry were clustered into 300 RFLP phylotypes. Shannon-Weiner diversity indices of two sampling sites were 8.7 and 6.1, indicating that the bacterial community structure of sewage treatment plant was more diverse than that of wastewater disposal plant of chemical industry. Forty clones belonging to predominant RFLP types were selected and sequenced. Seventy percent (28 clones) of the sequenced clones were related to the uncultured bacteria in public databases. The ${\beta}-Proteobacteria$ dominated in the bacterial communities of investigated two sludge samples. 16S rDNA sequences of the sewage treatment plant were similar to those of other activated sludges, while the bacterial community in wastewater disposal plant of chemical industry rep­resented the strains identified from high-temperature, anaerobic, hydrocarbon-rich, and sulfur-rich environ­ments. This result suggested that bacterial communities depended upon the components of wastewater.

• Journal of Life Science
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• v.25 no.3
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• pp.257-262
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• 2015

The genetic variability of four species of the genus Zoysia collected from South Korea was analyzed using an inter-simple sequence repeat (ISSR) marker system. Polymerase chain reactions (PCR) with eight ISSR primers generated 86 amplicons, 76 (87.1%) of which were polymorphisms. The polymorphism information content (PIC) value of the ISSR marker system was 0.848. The percentage of polymorphic loci (P_p) ranged from 41.2% to 44.7%. Nei’s gene diversity (H) ranged from 0.149 to 0.186, with an average overall value of 0.170. The mean of Shannon’s information index (I) value was 0.250. Total genetic diversity values (H_T) varied between 0.356 (ISSR-1) and 0.418 (ISSR-16), for an average overall polymorphic loci of 0.345. Interlocus variation in within-species genetic diversity (H_S) was low (0.170). On a per-locus basis, the proportion of total genetic variation due to differences among species (G_ST) was 0.601. This indicated that about 60.1% of the total variation was among species. Thus, about 39.9 of genetic variation was within species. The estimate of gene flow, based on G_ST, was very low among species of the genus Zoysia (N_m = 0.332). The phylogenic tree showed three distinct groups: Z. macrostachya and Z. tenuifolia clades and other species were formed the separated clusters. In conclusion, the ISSR assay was useful for detecting genetic variation in the genus Zoysia, and its discriminatory power was comparable to that of other genotyping tools.

• Korean Journal of Environment and Ecology
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• v.27 no.4
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• pp.462-472
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• 2013

This study was carried out to provide a basic data for preservation of Pinus desiflora forest as cultural landscape forest by analyzing characteristics of plant community of P. desiflora forest in Geumjeongsan(mountatin) in Busan city. In order to analyze plant community of P. densiflora in Geumjeongsan, we set up 10 study plots inside and 8 plots outside of Geumjeongsansung(mountain fortress, hereinafter 'Sansung')(unit area: $400m^2$), a total of 18 plots. TWINSPAN analysis divided these 18 study plots into 6 communities which are Querqus serrata-P. desiflora community, P. desiflora community, P. desiflora-Q. serrata community, P. thunbergii-P. densiflora community, P. densiflora-P. thubergii-Q. acutissima community, and P. densiflora-Platycarya strobilacea community. Importance Percentage (I.P.) of each area and DBH class distribution of main species showed that P. densiflora community would succeed to Q. serrata community or C. tschonoskii community. Analysis on tree age found out that communities in the Sansung were 32~37 years old and those outside the Sansung were 44~57 years old. Shannon's species diversity index ranged from 0.4826 to 1.2499. Regarding correlation between species, P. densiflora had negative correlation with Styrax japonica. Based on abovementioned result we expected ecological succession from P. densiflora community to Q. serrata community inside of the Sansung. Outside the Sansung, succession from P. densiflora-P. thunbergii community to C. tschonoskii-Q. serrata community was expected. In order to manage P. densiflora forest as cultural landscape forest, Q. spp in the understory and shrub layer and deciduous broad-leaved arboreal trees should be managed. Tree crown management of deciduous broad-leaved trees in competition with P. desiflora, is also required.

• Journal of Korean Society of Forest Science
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• v.103 no.1
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• pp.51-58
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• 2014

Genetic diversity and genetic structures were estimated in seven natural populations of Phellodendron amurense Rupr in South Korea using ISSR markers. The average of polymorphic loci per primer and the proportion of polymorphic loci per population were 4.5 and 78.8% respectively with total 27 polymorphic loci from 6 ISSR primers. The Shannon's diversity index(I) was 0.421 and the expected heterozygosity($H_e$) was 0.285, which was similar to the heterozygosity (hs =0.287) inferred by Bayesian method. In AMOVA, 7.6% of total genetic variation in the populations was resulted from the genetic difference among populations and the other 92.4% was resulted from the difference among individuals within populations. Genetic differentiation(${\theta}^{II}$) and inbreeding coefficient(f) for total population were estimated to be 0.066 and 0.479 by Bayesian method respectively. In Bayesian clustering analysis, seven populations were assigned into three groups. This result was similar to the results of genetic relationships by UPGMA and PCA. The first group included Hwachoen, Gapyeong, Bongpyeong and Yongpyeong population, and the second included two populations in Sancheong region. Muju population was discretely assigned into the third group in spite of the geographically short distance from the Sancheong region. There was no significant correlation between genetic relationship and geographic distribution among populations in Mantel's test. For conservation of the phellodendron trees, it would be effective to consider the findings resulted from this study with ecological traits and life histories of this species.

• Journal of Wetlands Research
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• v.24 no.4
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• pp.354-366
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• 2022

To analyze the distribution of plant communities growing in river wetlands and the relationship between biotic and abiotic environmental factors, plant communities and environmental factors were investigated in river wetlands in the Boseong River. The Boseong River Wetland, the research site, consists of Hwapyeong Wetland, Bangujeong Wetland, and Seokgok Wetland. From June to September 2022, a plant community survey was conducted from the perspective of physiognomical vegetation, and the coverage of the emerging species followed the Braun-Blanquet scale. Plant species and the coverage of each species were recorded in the quadrant for plant community survey, and the cover of the quadrant, the total number of species, and the number of exotic species were measured as biological factors. As abiotic factors, altitude, orientation, inclination, soil texture, litter layer depth, dominant species diameter at breast height, and topography were recorded. In a total of 50 square plots, the most common Salix koreensis and Phragmites japonicus communities were found, and the community with the highest Shannon species diversity index was Phragmites japonicus-Echinochloa caudata community. As a result of ordination analysis by DCCA, the most significant clusters were separated according to topographic factors such as leeve, leeve slope, upper floodplain, lower floodplain, upper waterside, middle waterside, lower waterside, river island and opem water. As rare plants that need to be preserved in river wetlands, Hydrocharis dubia and Penthorum chinense were found in lower waterside, and it was found that the management of the river in the reservoir is necessary in line with the topographical distribution of ecosystem-disrupting plants, such as Paspalum distichum var. indutum.

• Korean Journal of Environment and Ecology
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• v.27 no.2
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• pp.196-203
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• 2013

Butterfly communities were monitored to investigate the emergence pattern with line transect method at Wolchulsan National Park through May to October in 2012. Totally 1,151 individuals belong to 49 species were monitored through the study period. Libythea celtis was a dominant species with showing 357 individuals(31%) followed by Pseudozizeeria maha 96 individuals(8.3%), Mycalesis gotama 75 individuals(6.5%) and Ninois dryas 72 individuals(6.2%) respectively. Among the monitoring periods, highest individuals and species(516 individuals belong to 30 species) were found at June and showed a high abundance near reservoir region. Highest diversity was shown at August with a Shannon index of 2.75 while lowest at October(Shanon index 1.78) and total diversity index was 1.71. Dominance values(Simpson index) showed highest at June with a value of 0.40 while lowest at September with a value of 0.07 and averaged 0.12. Kungol and Seongjeon compose a high similarity habitats with a similarity value of 0.52 and it was 0.17 at Kungol and Youngsan, lowest cases. Reservoir banks played a important role for habitats of specific species. It can be considered that they provide an open space of glass land for butterfly population, which was deficient at mountain area.

• Korean Journal of Environmental Biology
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• v.38 no.1
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• pp.146-159
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• 2020

The objective of our study was to analyze the distribution and composition of fish species and their community characteristics in agricultural waterways in the six water systems-Mankyung River, Seomjin River, Namhae Region, Tamjin River, Yeongsan River, and Dongjin River-during 2017-2018. Little is known about the distributions and community characteristics of the aquatic biota of agricultural waterways in Korea, even if the water bodies have important roles as spawning areas or habitats for fish. In this study, we identified 3,633 fish individuals in the waterways, belonging to 53 species, eleven families, and six orders (dominant species: Tanakia koreensis, T. lanceolate) and 7,108 fish individuals in the main rivers, belonging to 57 species, fifteen families, and nine orders. Moreover, three endangered wildlife (designated by the Ministry of Environment, Korea)-T. somjinensis, Acheilognathus majusculus and Coreoperca kawamebari-were found in the waterways. By fish guild analysis, we found that many waterways had a lower proportion of sensitive species and a higher proportion of omnivore species than those of the main rivers, which indicates a feature of a disturbed environment. In addition, by grouping with environmental variables, we found the group of waterways with high substrate complexity had a higher diversity index (Shannon index) and a lower dominance index (Simpson index) than that of simple substrate complexity. Overall, our study represents the characteristics of fish habitats in agricultural waterways and suggests the need to manage them and study further.

• Journal of the Korean Society of Marine Environment & Safety
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• v.22 no.1
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• pp.27-41
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• 2016

This study was performed to investigate the community structure and health assessment of macrobenthic assemblages in Geoje-Hansan Bay, Southern Coast of Korea. Macrobenthos were collected by van Veen grab sampler at May (spring) and August (summer) 2013. The total species number and mean density were 300 species $7.6m^{-2}$ and $1,994ind.\;m^{-2}$, respectively. The major dominant species were the polychaetes Lumbrineris longifolia ($299{\pm}164ind.\;m^{-2}$), Aphelochaeta monilaris ($100{\pm}57ind.\;m^{-2}$), the bivalve Musculista senhousia ($91{\pm}96ind.\;m^{-2}$) and the polychaete Praxillella affinis ($80{\pm}66ind.\;m^{-2}$). From the community statistics [cluster analysis and nonmetric multidimentional scaling (NMDS) ordination], the macrobenthic community was distinguished into two groups of inner bay (farming ground of near Sandal Island) and channel station(from Hansan Island to Chubong Island) group. In this study, the ecological status was assessed by four biotic indices Shannon's H', the ATZI Marine Biotic Index (AMBI), multivariate-AMBI (M-AMBI) and the Environment Conservation Index (ECI). The ecological status of the macrobenthic community in Geoje-Hansan Bay were poorer in the inner bay station than in the channel station. The results of the present study showed that three biotic indices (Shannon's H', M-AMBI and ECI) were valid as an index for evaluating the ecological status than the AMBI.

• Journal of Life Science
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• v.26 no.12
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• pp.1446-1457
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• 2016

Wetlands exhibit intermediate characteristics of both terrestrial and aquatic ecosystems, and the biodiversity is rich in these unique biological habitats. The symbiotic relationships between plants and fungi that inhabit these wetlands play an important role in natural resource management, biodiversity, and conservation. Accordingly, the mujechi, having academic value for the study of the natural environment, was investigated in terms of genetic diversity of endophytic fungi, which inhabit the roots of wild plants. The internal transcribed spacer (ITS) region was amplified to identify fungal strains. In total, 226 strains were isolated and categorized into three phyla, seven classes, 10 orders, 22 families, and 31 genera. In plants by endophytic fungi were classified in Isachne globosa (Ig) to 19 genera, Scirpus karuisawensis (Sk) to 11 genera, Utricularia racemosa (Ur) to 19 genera, and one incertae sedis, Eriocaulon decemflorum (Ed) to 11 genera. The fungal taxa was identified the genera Acephala (19.9%), Tolypocladium (16.3%), Neopestalotiopsis (11.5%), and Perenniporia (7.1%). The fungal group isolated from Isachne globosa (Ig) grew the largest number of isolated fungal strains. After comprehensive evaluation, the endophytic fungal group from Utricularia racemosa (Ur) ranked highest in diversity analyses. From the roots of wild plant in mujechi-neup, it confirmed the distribution and diversity of endophytic fungi. This study provides the basic data to understand fungal community structure in peat wetlands.