• 한국미생물·생명공학회지
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• 제31권4호
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• pp.334-341
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• 2003

2001년 경북지역 콜레라 유행시 설사환자에서 V. cholerae O1 El Tor형 90주를 분리하였다. 분리균을 대상으로 ctxA, tcpA, hlyA gene에 대한 multiplex-PCR 시험에서는 분리균 모두에서 302, 223, 471 bps크기의 DNA 증폭산물 band를 확인하였다. ctxA 및 ctxB gene 부위의 유전자 염기서열 비교에서 분리균과 GenBank에 수록된 균간의 유형의 차이를 보였다. PFGE typing 실험에서는 분리균 모두에서 동일한 amplicon 단편을 나타내었다. 또한, 2002년 8월부터 10월까지 콜레라균 서식가능성 규명을 위해 경북 동해안 일대에서 plankton 시료채취 및 V. cholerae O1 및 V. cholerae O139의 rfb 및 CT gene 검출을 위한 multiplex-PCR 확인실험에서는 ctxA gene의 DNA band는 일부 검출되었으나, V. cholerae O1 및 V. cholerae O139는 분리되지 않았다. 험에서 ctxA gene DNA band는 검출되었으나, V. cholerae O1 및 V. cholerae O1는 분리되지 않았다.

• Journal of Microbiology and Biotechnology
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• 제22권7호
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• pp.960-966
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• 2012

The diversity and composition of yeast populations may greatly impact wine quality. This study investigated the yeast microbiota in two different types of wine fermentations: direct inoculation of a commercial starter versus pied de cuve method at an industrial scale. The pied de cuve fermentation entailed growth of the commercial inoculum used in the direct inoculation fermentation for further inoculation of additional fermentations. Yeast isolates were collected from different stages of wine fermentation and identified to the species level using Wallersterin Laboratory nutrient (WLN) agar followed by analysis of the 26S rDNA D1/D2 domain. Genetic characteristics of the Saccharomyces cerevisiae strains were assessed by a rapid PCR-based method, relying on the amplification of interdelta sequences. A total of 412 yeast colonies were obtained from all fermentations and eight different WL morphotypes were observed. Non-Saccharomyces yeast mainly appeared in the grape must and at the early stages of wine fermentation. S. cerevisiae was the dominant yeast species using both fermentation techniques. Seven distinguishing interdelta sequence patterns were found among S. cerevisiae strains, and the inoculated commercial starter, AWRI 796, dominated all stages in both direct inoculation and pied de cuve fermentations. This study revealed that S. cerevisiae was the dominant species and an inoculated starter could dominate fermentations with the pied de cuve method under controlled conditions.

• Journal of Microbiology and Biotechnology
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• 제30권9호
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• pp.1335-1342
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• 2020

The identification of bacterial pathogens to humans is critical for environmental microbial risk assessment. However, current methods for identifying pathogens in environmental samples are limited in their ability to detect highly diverse bacterial communities and accurately differentiate pathogens from commensal bacteria. In the present study, we suggest an improved approach using a combination of identification results obtained from multiple databases, including the multilocus sequence typing (MLST) database, virulence factor database (VFDB), and pathosystems resource integration center (PATRIC) databases to resolve current challenges. By integrating the identification results from multiple databases, potential bacterial pathogens in metagenomes were identified and classified into eight different groups. Based on the distribution of genes in each group, we proposed an equation to calculate the metagenomic pathogen identification index (MPII) of each metagenome based on the weighted abundance of identified sequences in each database. We found that the accuracy of pathogen identification was improved by using combinations of multiple databases compared to that of individual databases. When the approach was applied to environmental metagenomes, metagenomes associated with activated sludge were estimated with higher MPII than other environments (i.e., drinking water, ocean water, ocean sediment, and freshwater sediment). The calculated MPII values were statistically distinguishable among different environments (p < 0.05). These results demonstrate that the suggested approach allows more for more accurate identification of the pathogens associated with metagenomes.

• 한국유기농업학회지
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• 제12권4호
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• pp.451-461
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• 2004

In an animals, identification system has been widely used by ear tag with dummy code and blood typing for parernity. Also, genotyping methods were using for useful mean of individual identification for live animals. In the case of genotyping estimation of gene in population of korean native chicken. In this study, we tested for development of genetic markers used it possible to determination of individual identification system. The candidate genetic markers were used already bow 10 of microstalite DNA sequence information in chromosome No. 1 and 14. Result of analysis for genotyping, the number of alleles of those microstatelites DNA was shown minimal 3 to 12 and the heterozygote expression frequency range was shown from 0.617 to 0.862. In our result, effective number of allele for each microsatellites DNA was shown 3~7, and the accuracy of individual identification was shown nearly 100%, when used with 6 genetic marker. This study was about genotyping method for identification used specific genetic marker form microsatellite DNA in the brand marketing of korean native chicken. Our results suggest that genotyping method used specific genetic marker from microsatellite DNA might be very useful for determination of individual identification.

• Translational and Clinical Pharmacology
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• 제25권2호
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• pp.63-66
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• 2017

Allopurinol-induced severe cutaneous adverse reactions (SCARs) such as Stevens-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN), and drug reaction with eosinophilia and systemic symptoms (DRESS) syndrome are reportedly associated with the $HLA-B^{\star}58:01$ genotype. Three patients who developed SCARs after allopurinol administration were subjected to HLA-B genotyping and lymphocyte activation test (LAT) to evaluate genetic risk and to detect the causative agent, respectively. All three patients given allopurinol to treat gout were diagnosed with DRESS syndrome. Symptom onset commenced 7-24 days after drug exposure; the patients took allopurinol (100-200 mg/d) for 2-30 days. HLA-B genotyping was performed using a polymerase chain reaction (PCR)-sequence-based typing (SBT) method. All patients had a single $HLA-B^{\star}58:01$ allele: $HLA-B^{\star}13:02/^{\star}58:01$ (a 63-year-old male), $HLA-B^{\star}48:01/^{\star}58:01$ (a 71-year-old female), and $HLA-B^{\star}44:03/^{\star}58:01$ (a 22-year-old male). Only the last patient yielded a positive LAT result, confirming that allopurinol was the causative agent. These findings suggest that patients with $HLA-B^{\star}58:01$ may develop SCARs upon allopurinol administration. Therefore, HLA-B genotyping could be helpful in preventing serious problems attributable to allopurinol treatment, although PCR-SBT HLA-B genotyping is time consuming. A simple genotyping test is required in practice. LAT may help to identify a causative agent.

• Parasites, Hosts and Diseases
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• 제58권6호
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• pp.681-687
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• 2020

Giardia lamblia is a common enteric pathogen associated with diarrheal diseases. There are some reports of G. lamblia infection among different breeds of cattle in recent years worldwide. However, it is yet to know whether cattle in Jiangxi province, southeastern China is infected with G. lamblia. The objectives of the present study were to investigate the prevalence and examine the multilocus genotypes of G. lamblia in cattle in Jiangxi province. A total of 556 fecal samples were collected from 3 cattle breeds (dairy cattle, beef cattle, and buffalo) in Jiangxi province, and the prevalence and genotypes of G. lamblia were determined by the nested PCR amplification of the beta-giardin (bg) gene. A total of 52 samples (9.2%) were positive for G. lamblia. The highest prevalence of G. lamblia was detected in dairy cattle (20.0%), followed by that in beef cattle (6.4%), and meat buffalo (0.9%). Multilocus sequence typing of G. lamblia was performed based on sequences of the bg, triose phosphate isomerase and glutamate dehydrogenase loci, and 22, 42, and 52 samples were amplifiable, respectively, forming 15 MLGs. Moreover, one mixed G. lamblia infection (assemblages A and E) was found in the present study. Altogether, 6 novel assemblage E subtypes (E41*-E46*) were identified for the first time. These results not only provided baseline data for the control of G. lamblia infection in cattle in this southeastern province of China, but also enriched the molecular epidemiological data and genetic diversity of G. lamblia in cattle.

• Journal of Veterinary Science
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• 제21권1호
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• pp.2.1-2.14
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• 2020

The emergence of livestock-associated (LA)-methicillin-resistant Staphylococcus aureus (MRSA) in livestock animal has become a significant zoonotic concern. In the present study, we investigated nationwide prevalence of LA-MRSA across pork production chain including pig farms, slaughterhouses, and retail markets. A total of 40 MRSA strains were isolated during the investigation and the overall prevalence of MRSA was 3.4% (n = 37), 0.6% (n = 2), and 0.4% (n = 1) in pig farms, slaughterhouses, and retail markets, respectively. Multilocus sequence typing analyses revealed that the 2 most significant clonal lineages in pork production chain in Korea were ST398 (n = 25) and ST541 (n = 6). All of the 40 MRSA isolates were further characterized to investigate key genotypic and phenotypic correlates associated with the emergence and spread of clonal complex 398 (CC398; ST398, and ST541) LA-MRSA. Although the prevalence of swine-associated MRSA was still relatively low and mostly restricted to pig farms, multidrug-resistant CC398 LA-MRSA isolates with new spa types (t18102 and t18103) were identified as a major clonal lineage. The CC398 LA-MRSA strains tended to exhibit increased levels of multiple drug resistance (MDR) phenotype compared with non-CC398 MRSA strains. Of note, in comparison with non-CC398 MRSA isolates, CC398 LA-MRSA isolates exhibited significantly enhanced tetracycline (TET) and zinc resistance. These findings suggested that co-selection pressure associated with MDR phenotype, especially TET resistance, and zinc resistance may have played a significant role in the emergence and persistence of CC398 LA-MRSA in pig farms in Korea.

• IMMUNE NETWORK
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• 제3권2호
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• pp.103-109
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• 2003

Background: As all HLA class II genes, the DQ genes show their polymorphic variation mainly in the second exon, which encodes the first extracellular domain of the molecule. PCR-SSOP (Polymerase chain reaction-Sequence specific oligonucleotide probe) techniques were frequently used for HLA-DQA1 and DQB1 typing but certain alleles, $DQA1^*0101/0104/0105$, $^*302/0303$, $*0501/0505$ and $DQB1^*0201/^*0202$ which differ from each other in segment other than exon 2, could not be unequivocally assigned. Methods: To overcome this problem, we applied additional PCR-SSP (PCR-Sequence specific primer) method to analyze DQA1 exons 1, 3 and 4 and DQB1 exon 3. And we investigated the distributions and haplotypes of HLA-DRB1, DQA1 and DQB1 alleles in 406 unrelated Korean healthy individuals. Results: Using this method the indistinguishable alleles of DQA1 and DQB1 in PCR-SSOP were typed definitively. We also found several important associations between DQA1 and DQB1 alleles in the Korean population; $DQA1^*0101-DQB1^*0501$, $DQA1^*0104-DQB1^*0502$ or $-^*0503$, $DQA1^*0105-DQB1^*0501$, $DQA1^*0302-DQB1^*0303$, $DQA1^*0303-DQB1^*0401$ or $-^*0402$, $DQA1^*0501-DQB1^*0201$, $DQA1^*0505-DQB1^*0301$, and $DQA1^*0201-DQB1^*0202$. The haplotypes of DRB1-DQA1-DQB1 associated with $DQA1^*01$, $^*03$, $^*05$, and $DQB1^*02$ subtypes were investigated. Several haplotypes associated with these alleles were observed in the Korean population. Conclusion: Our results can be helpful to find potential unrelated donors for bone marrow registries and study the HLA-associated disease and anthropology at high-resolution allelic level.

• 대한임상검사과학회지
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• 제52권4호
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• pp.342-348
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• 2020

전 세계적으로 요로감염은 사람에서 가장 흔한 감염 질환 중 하나로, 요로병인성 E. coli는 요로감염의 주요 원인균이다. 요로병인성 E. coli는 많은 항균제에 대한 내성이 점차 증가하고 있어, 최근 요로감염의 항균제 치료에 큰 우려를 낳고 있는 실정이다. 본 연구는 2017년 3월부터 12월까지, 대전지역의 요로감염 환자에서 분리된 요로병인성 E. coli 84 균주를 대상으로 역학관계와 항균제 내성 양상을 조사하였다. 역학 관계를 확인하기 위해 다좌위 서열 형별분석(MLST)를 실시하였고, 항균제 감수성 시험은 E-test법으로 확인하였다. 본 연구 결과, 요로감염은 남성(26.2%)보다 여성(73.8%)에서 더 흔한 분포를 보였고, 70대가 가장 높은 분포의 연령대로 확인되었다. 84 균주의 요로병인성 E. coli 중, 59 균주(70.2%)가 다제내성이었으며, 주요 seqeunce type은 ST131 (44 균주, 52.4%)임을 확인하였다. 흥미롭게도, non-ST131에서 다제내성의 비율(72.5%)이 ST131 (68.2%)보다 더 높은 결과를 확인하였다. 이러한 연구결과는 non-ST131에서의 다제내성의 발달과 확산 가능성을 의미하는 것으로 해석된다. 다제내성 non-ST131의 출현과 국제적인 확산을 예방하기 위해, 전 세계적으로 효과적인 감시 체계와 지속적인 연구가 수행되어야 할 것으로 사료된다.

• 한국식품위생안전성학회지
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• 제39권3호
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• pp.231-238
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• 2024

국내에서 V. parahaemolyticus로 인한 식중독 사고가 지속적으로 보고되고 있으며, 최근 국내 수산물 판매량 및 수산물 양식에 사용되는 항생제 판매량은 증가하는 추세이다. 따라서 본 연구는 국내에 유통되는 수산물에서 분리한 V. parahaemolyticus의 분포, 항생제 감수성, 유전적 특성 및 유전학적 통계를 조사하였다. 79건의 유통 수산물로부터 47건(59.5%)에서 V. parahaemolyticus가 분리되었다. 항생제 내성 양상의 경우, 총 47균주의 분리 균주에서는 ampicillin에 2균주(4.3%)가 내성을 보였으며, 이외 균주는 모든 항생제에 대해 감수성을 보였다. 항생제 내성 유전자의 경우, 모든 균주(100%)로부터 bla_CAR family gene, tet(35), catC가 확인되었으며, 1균주(2.1%)에서는 fos가 확인되었다. 병원성 유전자 여부의 경우, 모든 분리 균주에서 tdh, trh 유전자는 확인되지 않았으나, T3SS1은 모든 균주(100%), T3SS2는 1균주(2.1%)에서 확인되었다. MLST의 경우, 17균주로부터 15가지의 ST가 확인되었으며, ST 658가 3균주, 이외 14가지 ST는 1균주씩 확인되었다. 확인된 ST는 대부분 중국, 태국 등의 환경 분리주로 확인되었으며, ST 396, ST 3042는 중국 임상 분리주로부터 확인되었다. 이로써, 최근 국내에 수산물과 관련한 식중독, 유통량, 항생제 판매량 등의 추세에 따른 위험성에 V. parahaemolyticus에 대한 지속적인 연구가 필요할 것으로 사료되며, 본 연구는 그에 대한 도움이 될 것이라 사료된다.