• Title/Summary/Keyword: Sequence coverage

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Improving Code Coverage for the FPGA Based Nuclear Power Plant Controller (FPGA기반 원전용 제어기 코드커버리지 개선)

  • Heo, Hyung-Suk;Oh, Seungrohk;Kim, Kyuchull
    • Journal of IKEEE
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    • v.18 no.3
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    • pp.305-312
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    • 2014
  • IIt takes a lot of time and needs the workloads to verify the RTL code used in complex system like a nuclear control system which is required high level reliability using simple testbench. UVM has a layered testbench architecture and it is easy to modify the testbench to improve the code coverage. A test vector can be easily constructed in the UVM, since a constrained random test vector can be used even though the construction of testbench using UVM. We showed that the UVM testbench is easier than the verilog testbench for the analysis and improvement of code coverage.

Protein Analysis Using a Combination of an Online Monolithic Trypsin Immobilized Enzyme Reactor and Collisionally-Activated Dissociation/Electron Transfer Dissociation Dual Tandem Mass Spectrometry

  • Hwang, Hyo-Jin;Cho, Kun;Kim, Jin-Young;Kim, Young-Hwan;Oh, Han-Bin
    • Bulletin of the Korean Chemical Society
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    • v.33 no.10
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    • pp.3233-3240
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    • 2012
  • We demonstrated the combined applications of online protein digestion using trypsin immobilized enzyme reactor (IMER) and dual tandem mass spectrometry with collisionally activated dissociation (CAD) and electron transfer dissociation (ETD) for tryptic peptides eluted through the trypsin-IMER. For the trypsin-IMER, the organic and inorganic hybrid monolithic material was used. By employing the trypsin-IMER, the long digestion time could be saved with little or no sacrifice of the digestion efficiency, which was demonstrated for standard protein samples. For three model proteins (cytochrome c, carbonic anhydrase, and bovine serum albumin), the tryptic peptides digested by the IMER were analyzed using LC-MS/MS with the dual application of CAD and ETD. As previously shown by others, the dual application of CAD and ETD increased the sequence coverage in comparison with CAD application only. In particular, ETD was very useful for the analysis of highly-protontated peptide cations, e.g., ${\geq}3+$. The combination approach provided the advantages of both trypsin-IMER and CAD/ETD dual tandem mass spectrometry applications, which are rapid digestion (i.e., 10 min), good digestion efficiency, online coupling of trypsin-IMER and liquid chromatography, and high sequence coverage.

A 3D FEA Model with Plastic Shots for Evaluation of Peening Residual Stress due to Multi-Impacts (다중충돌 피닝잔류응력 평가를 위한 소성숏이 포함된 3차원 유한요소해석 모델)

  • Kim, Tae-Hyung;Lee, Hyungy-Il
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.32 no.8
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    • pp.642-653
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    • 2008
  • In this paper, we propose a 3-D finite element (FE) analysis model with combined physical behavior and kinematical impact factors for evaluation of residual stress in multi-impact shot peening. The FE model considers both physical behavior of material and characteristics of kinematical impact. The physical parameters include elastic-plastic FE modeling of shot ball, material damping coefficient, dynamic friction coefficient. The kinematical parameters include impact velocity and diameter of shot ball. Multi-impact FE model consists of 3-D symmetry-cell. We can describe a certain repeated area of peened specimen under equibiaxial residual stress by the cell. With the cell model, we investigate the FE peening coverage, dependency on the impact sequence, effect of repeated cycle. The proposed FE model provides converged and unique solution of surface stress, maximum compressive residual stress and deformation depth at four impact positions. Further, in contrast to the rigid and elastic shots, plastically deformable shot produces residual stresses closer to experimental solutions by X-ray diffraction. Consequently, it is confirmed that the FE model with peening factors and plastic shot is valid for multi-shot peening analyses.

Advanced ZigBee Baseband Processor with Variable Data Rates for Internet-of-things Applications

  • Hwang, Hyunsu;Jang, Soohyun;Lee, Seongjoo;Jung, Yunho
    • JSTS:Journal of Semiconductor Technology and Science
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    • v.17 no.1
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    • pp.56-64
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    • 2017
  • In this paper, an advanced ZigBee (AZB) system for internet-of-things (IoT) applications is proposed which can support various data rates from 31.25 Kbps to 2 Mbps, and the implementation results of the AZB baseband processor are presented. Repetition coding for 32-chip direct-sequence spread spectrum (DSSS) symbol is applied for low rates under 250 Kbps to extend the coverage. Convolution coding, puncturing, and interleaving for non-DSSS symbol are performed for high rates from 500 Kbps to 2 Mbps for multi-media services. Simulation results show that the coverage increases at the rate of 51.8-77.3% for various environments compared with IEEE 802.15.4 ZigBee. AZB baseband processor was implemented in 180 nm CMOS process and total gate counts are 260K with the size of $5.8mm^2$.

Flanking Sequence and Copy-Number Analysis of Transformation Events by Integrating Next-Generation Sequencing Technology with Southern Blot Hybridization

  • Qin, Yang;Woo, Hee-Jong;Shin, Kong-Sik;Lim, Myung-Ho;Cho, Hyun-Suk;Lee, Seong-Kon
    • Plant Breeding and Biotechnology
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    • v.5 no.4
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    • pp.269-281
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    • 2017
  • With the continual development of genetically modified (GM) crops, it has become necessary to develop detailed and effective molecular characterization methods to select candidate events from a large pool of transformation events. Relative to traditional molecular analysis methods such as the polymerase chain reaction (PCR) and Southern blot hybridization, next generation sequencing (NGS) technology for whole-genome sequencing of complex crop genomes had proven comparatively useful for in-depth molecular characterization. In this study, four transformation events, including one in Bacillus thuringiensis (Bt)-resistant rice, one in resveratrol-producing rice, and two in beta-carotene-enhanced soybeans, were selected for molecular characterization. To merge NGS analysis and Southern blot-hybridization results, we confirmed the transgene insertion sites, insertion construction, and insertion numbers of these four transformation events. In addition, the read-coverage depth assessed by NGS analysis for inserted genes might provide consistent results in terms of inserted T-DNA numbers in case of complex insertion structures and highly duplicated donor genomes; however, PCR-based methods can produce incorrect conclusions. Our combined method provides an effective and complete analytical approach for whole-genome visual inspection of transformation events that require biosafety assessment.

A UML-based Approach towards Test Case Generation and Optimization

  • Shahid Saleem;Saif U. R. Malik;Bilal Mehboob;Roobaea Alroobaea;Sultan Algarni;Abdullah M. Baqasah;Naveed Ahmad;Muhammad Hasnain
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.18 no.3
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    • pp.633-652
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    • 2024
  • Software testing is an important phase as it ensures the software quality. The software testing process comprises of three steps: generation, execution, and evaluation of test cases. Literature claims the usage of single and multiple 'Unified Modeling Language' (UML) diagrams to generate test cases. Using multiple UML diagrams increases test case coverage. However, the existing approaches show limitations in test case generation from UML diagrams. Therefore, in this research study, we propose an approach to generate the test cases using UML State Chart Diagram (SCD), Activity Diagram (AD), and Sequence Diagram (SD). The proposed approach transforms UML diagrams into intermediate forms: SCD Graph, AD Graph, and SD Graph respectively. Furthermore, by integrating these three graphs, a System Testing Graph (STG) is formed. Finally, test cases are identified from STG by using a traversal algorithm such as Depth First Search (DFS) that is an optimization method. The results show that the proposed approach is better compared to existing approaches in terms of coverage and performance. Moreover, the generated test cases have the ability to detect faults at the unit level, integration, and system level testing.

SOC Bus Transaction Verification Using AMBA Protocol Checker

  • Lee, Kab-Joo;Kim, Si-Hyun;Hwang, Hyo-Seon
    • JSTS:Journal of Semiconductor Technology and Science
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    • v.2 no.2
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    • pp.132-140
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    • 2002
  • This paper presents an ARM-based SOC bus transaction verification IP and the usage experiences in SOC designs. The verification IP is an AMBA AHB protocol checker, which captures legal AHB transactions in FSM-style signal sequence checking routines. This checker can be considered as a reusable verification IP since it does not change unless the bus protocol changes. Our AHB protocol checker is designed to be scalable to any number of AHB masters and reusable for various AMBA-based SOC designs. The keys to the scalability and the reusability are Object-Oriented Programming (OOP), virtual port, and bind operation. This paper describes how OOP, virtual port, and bind features are used to implement AHB protocol checker. Using the AHB protocol checker, an AHB simulation monitor is constructed. The monitor checks the legal bus arbitration and detects the first cycle of an AHB transaction. Then it calls AHB protocol checker to check the expected AHB signal sequences. We integrate the AHB bus monitor into Verilog simulation environment to replace time-consuming visual waveform inspection, and it allows us to find design bugs quickly. This paper also discusses AMBA AHB bus transaction coverage metrics and AHB transaction coverage analysis. Test programs for five AHB masters of an SOC, four channel DMAs and a host interface unit are executed and transaction coverage for DMA verification is collected during simulation. These coverage results can be used to determine the weak point of test programs in terms of the number of bus transactions occurred and guide to improve the quality of the test programs. Also, the coverage results can be used to obtain bus utilization statistics since the bus cycles occupied by each AHB master can be obtained.

Coverage metrics for high-level events in behavioral model verification (동작적 모델 검증의 상위 레벨 사건에 대한 검출률 측정법)

  • Kim, Kang-Chul;Im, Chang-Gyun;Ryu, Jae-Hung;Han, Suk-Bung
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.10 no.3
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    • pp.496-502
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    • 2006
  • The complexity of IC has rapidly increased as VLSI fabrication technology has grown up quickly. This paper proposes verification methods for data conflicts and protocol between IPs for SoC with coverage metrics. The high-level events is defined to cooperation between blocks or process statement in HDL, or a sequence of performing a job compared to low-level event. They are classified into two categories, resource conflicts and protocol or specification-dependent conflicts. And two coverage metrics used for code coverage in low-level event are proposed to verify the hish-level events. The events of resource conflicts can be detected by using statement coverage metric if global signal or variable has flags in a testbench program, and protocol-dependent events can be checked by data flow metric or path metric.

A Effective Generation of Protocol Test Case Using The Depth-Tree (깊이트리를 이용한 효율적인 프로토콜 시험항목 생성)

  • 허기택;이동호
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.18 no.9
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    • pp.1395-1403
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    • 1993
  • Protocol conformance is crucial to inter-operability and cost effective computer communication. Given a protocol specification, the task of checking whether an inplementation conforms to the specification is called conformance testing. The efficiency and fault coverage of conformance testing are largely dependent on how test cases are chosen. Some states may have more one UIO sequence when the protocol is represented by FSM (Finite State Machine). The length of test sequence can be minimized if the optimal test sequences are chosen. In this paper, we construct the depth-tree to find the maximum overlapping among the test sequence. By using the resulting depth-tree, we generate the minimum-length test sequence. We show the example of the minimum-length test sequence obtained by using the resulting depth-tree.

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High-density genetic mapping using GBS in Chrysanthemum

  • Chung, Yong Suk;Cho, Jin Woong;Kim, Changsoo
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.57-57
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    • 2017
  • Chrysanthemum is one of the most important floral crop in Korea produced about 7 billion dollars (1 billion for pot and 6 billion for cutting) in 2013. However, it is difficult to breed and to do genetic study because 1) it is highly self-incompatible, 2) it is outcrossing crop having heterozygotes, and 3) commercial cultvars are hexaploid (2n = 6x = 54). Although low-density genetic map and QTL study were reported, it is not enough to apply for the marker assisted selection and other genetic studies. Therefore, we are trying to make high-density genetic mapping using GBS with about 100 $F_1s$ of C. boreale that is oHohhfd diploid (2n = 2x = 18, about 2.8Gb) instead of commercial culitvars. Since Chrysanthemum is outcrossing, two-way pseudo-testcross model would be used to construct genetic map. Also, genotype-by-sequencing (GBS) would be utilized to generate sufficient number of markers and to maximize genomic representation in a cost effective manner. Those completed sequences would be analyzed with TASSEL-GBS pipeline. In order to reduce sequence error, only first 64 sequences, which have almost zero percent error, would be incorporated in the pipeline for the analysis. In addition, to reduce errors that is common in heterozygotes crops caused by low coverage, two rare cutters (NsiI and MseI) were used to increase sequence depth. Maskov algorithm would also used to deal with missing data. Further, sparsely placed markers on the physical map would be used as anchors to overcome problems caused by low coverage. For this purpose, were generated from transcriptome of Chrysanthemum using MISA program. Among those, 10 simple sequence repeat (SSR) markers, which are evenly distributed along each chromosome and polymorphic between two parents, would be selected.

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