• Title/Summary/Keyword: Selection efficiency

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Development of SNP Molecular Marker for Red-fleshed Color Identification of Peach Genetic Resources (복숭아 유전자원의 적색 과육 판별 SNP 분자표지 개발)

  • Kim, Se Hee;Nam, Eun Young;Cho, Kang Hee;Jun, Ji Hae;Chung, Kyeong Ho
    • Korean Journal of Plant Resources
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    • v.32 no.4
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    • pp.303-311
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    • 2019
  • Various colors of fruit skin and flesh are the most popular commercial criteria for peach classification. In order to breed new red-fleshed peach cultivar, many cross seedlings and generations should be maintained. Therefore it is necessary to develop early selection markers to screen seedlings with target traits to increase breeding efficiency. For the comparison of transcription profiles in peach cultivars differing in flesh color expression, two cDNA libraries were constructed. Differences in gene expression between red-fleshed peach cultivar, 'Josanghyeoldo' and white-fleshed peach cultivar, 'Mibaekdo' were analyzed by next-generation sequencing (NGS). Expressed sequence tag (EST) of clones from the two cultivars were selected for nucleotide sequence determination and homology searches. Putative single nucleotide polymorphisms (SNP) were screened from peach EST contigs by high resolution melting (HRM) analysis displayed specific difference between 8 red-fleshed peach cultivars and 24 white-fleshed peach cultivars. All 72 pairs of SNPs were discriminated and the HRM profiles of amplicons were established. In the study reported here, the development of SNP markers for distinguishing between red and white fleshed peach cultivars by HRM analysis offers the opportunity to use DNA markers. This SNP marker could be useful for peach marker assisted breeding and provide a good reference for relevant research on molecular mechanisms of color variation in peach cultivars.

Method development for efficacy testing of veterinary disinfectants using bacteriophage MS2 (Bacteriophage MS2를 이용한 소독제 효력시험 확립에 관한 연구)

  • Rhee, Chae Hong;Kim, Soohee;Han, Bokhee;Kim, Young-Wook;Her, Moon;Jeong, Wooseog
    • Korean Journal of Veterinary Service
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    • v.44 no.3
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    • pp.149-155
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    • 2021
  • In virucidal efficacy testing, the chemical inactivation cannot be determined for all viruses due to the difficulties or the inability to culture sufficiently or the risk of exposure to the viruses. Therefore, disinfectants against these viruses could be evaluated by different methods and surrogate viruses are used as alternative. In this study we developed a method for efficacy testing of veterinary disinfectants using one of the candidate surrogate viruses, bacteriophage MS2, as part of the research on the selection of surrogate viruses for efficiency of efficacy testing of veterinary disinfectants. This method is based on the Animal and Plant Quarantine Agency (APQA) guidelines for efficacy testing of veterinary disinfectants. Bacteriophage and disinfectant are reacted in suspension in accordance with the APQA guidelines and then a newly established double agar layer method is applied for the efficacy test. The double agar layer method is summarized as follows: 1) The bottom agar with 1.5% agar is boiled and cooled before poured into petri dishes at volume of 20 mL, and dried under biological safety cabinet. 2) The top agar with 0.7% agar is boiled and kept at 50℃ before E. coli culture was seeded. 3) The serially diluted bacteriophage MS2-disinfectant mixtures 0.05 mL and E. coli host 0.01 mL (OD600 0.2~0.3) are mixed with 5 mL of top agar and incubate them at 50℃ for 5 min for reaction. 4) The resulting mixture is poured over top of a bottom agar plate and rocked sufficiently to ensure that the top agar covers the entire surface of the bottom agar. 5) The double agar layer is then placed under biological safety cabinet to allow the agar layer to solidify and subsequently incubated at 37℃ for 24 hr. 6) Following incubation, the plates may be inspected for plaques and record results.

Covariance Among Lactation Number, Growth Performance, Calving Interval, and Milk Yield in Holstein Dairy Cows in Korea

  • Kim, Tae-Il;Mayakrishnan, Vijayakumar;Baek, Kwang-Soo;Jeong, Ha-Yeon;Park, Boem-Young;Lim, Dong-Hyun
    • Journal of agriculture & life science
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    • v.51 no.6
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    • pp.137-144
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    • 2017
  • A diverse of recommendation has been made for the structure and management of dairy cows, despite demanding research, the relationship between lactation number and various factors is yet to be established. The present study was aimed to investigate the covariance among lactation number, growth performance, calving interval, and milk production was considered to increase an efficiency of selection schemes and to manage more efficiently Holstein dairy cows that have been raised on small-scale family farms in Republic of Korea. For that purpose, the data were observed from 850 Holstein dairy cows, which a total of 3929 milking, since April 2016 - January 2017. We measured the body weight, height, age, calving interval, and milk production of the each dairy cow. Also, information about the date of lactation, calving interval, and milk production was recorded using an automatic milking system(AMS) with identification numbers. Milk production was calculated per udder quarter in the AMS. Our study results showed the increased average body weight(p>0.05) in 1, 2, 3, and $4^{th}$ lactating dairy cows and afterwards, we noticed the tendency on the average body weight(p<0.05) per lactation progressed. There was no significant difference noticed on height measurement of dairy cows. From the processing data of 850 Holstein dairy cows, the lactation number 1 and 7 had a greater calving interval with significantly lowered milk production, and the lactation number 2, 3, 4, 5, and 6 had significantly lowered the calving interval(p<0.05) with a greater milk production. From our study results, we evidenced that there is a significant relationship between the lactation number, growth performance, calving interval, and milk yield, and the maximum production of milk occurring in the $3^{rd}$ and $4^{th}$ lactation dairy cows. The achieved results from this study can be used by the small-scale farmers to encourage the structure and management of growth performance, calving interval, and milk yield in Holstein dairy cows in Korea.

A Study on the RDF Manufacturing of Coffee grounds by using Pilot scale Oil-drying Equipment (Pilot scale 유중건조 장비를 이용한 커피찌꺼기의 고형연료화 연구)

  • Kwon, Ik-Beom;Ha, Jin-Wook
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.20 no.2
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    • pp.443-450
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    • 2019
  • We studied to find the optimal manufacturing conditions of coffee grounds sludge RDF with oil drying method. We expanded the lab scale to pilot scale to compare the efficiency of the oil-drying equipment and The selection of the ratio of coffee grounds and oil, the setting temperature, and the temperature change and water content with time were measured. In order to analyze the characteristics of the research results, characteristics of solid fuels produced(Coffee grounds of oil-dried) by calorimeter, TGA, combustion equipment, and combustion gas measuring instrument were analyzed. As a result, the ratio of oil to coffee grounds was 4: 1, and when the setting temperature was set to $300^{\circ}C$, the water content reached 10wt.% or less within 20 minutes. ln addition, it showed high calorific value of 6,273kcal/kg. However, coffee grounds had a similar composition to wood and showed high luminance and produced a lot of CO in combustion gas. As a result, it is considered to be unsuitable for thermoelectric power plant and camping fuel, but the initial ignition speed is high and the heat generation is high, so it is considered that it can replace the fuels for current use.

A Study on Selection of Standard Scenarios in Korea for Climate Change (기후변화 표준 시나리오 선정에 관한 연구)

  • Lee, Jae-Kyoung;Kim, Young-Oh
    • Journal of Climate Change Research
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    • v.1 no.1
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    • pp.59-73
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    • 2010
  • One of the most important issues for projecting future water resources and establishing climate change adaptation strategies is 'uncertainty'. In Korea, climate change research results were very heterogeneous even in a same basin, but there have been few climate change studies dealt with the uncertainty reduction. This is because emission scenarios, GCMs, downscaling, and rainfall-runoff models that were used in the previous studies were almost all different. In this research, fifty one GCM scenarios based A and B emission scenarios were downloaded and then compared with the observed values for a period from January 2001 to December 2008. The downloaded GCM scenarios in general simulated well the observed but did not simulated well the observed precipitation especially for the flood season in Korea. The accuracy of each GCM scenario was measured with the model efficiency, PDF-based, and Relative Entropy methodology. Among the selected GCM scenarios with three methodologies, the four common GCM scenarios(CGCM2.3.2(MRI-M, B1), MIROC3.2medress(NIES, B1), CGCM2.3.2(MRI-M, A2), CGCM2.3.2(MRI-M, A1B) were finally selected. Results of the four selected GCMs were heterogeneity and projected increases of precipitation for the Korean Peninsula by from 27.36% to 12.49%, respectively. It seems very risky to rely a water planning or a management policy on use of a single climate change scenario and from this research results. Therefore, the four selected GCM scenarios proposed quantitatively were considered firstly for the water supply in the dry season and the drought management strategy in the Korean Peninsula for the future.

Agent-based Modeling and Analysis of Tactical Reconnaissance Behavior with Manned and Unmanned Vehicles (에이전트 기반 유·무인 수색정찰 전술행위 모델링 및 분석)

  • Kim, Ju Youn;Han, Sang Woo;Pyun, Jai Jeong
    • Journal of the Korea Society for Simulation
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    • v.27 no.4
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    • pp.47-60
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    • 2018
  • Today's unmanned technology, which is being used in various industries, is expected to be able to make autonomous judgements as autonomous technology matures, in the long run aspects. In order to improve the usability of unmanned system in the military field, it is necessary to develop a technique for systematically and quantitatively analyzing the efficiency and effectiveness of the unmanned system by means of a substitute for the tasks performed by humans. In this paper, we propose the method of representing rule-based tactical behavior and modeling manned and unmanned reconnaissance agents that can effectively analyze the path alternatives which is required for the future armored cavalry to establish a reconnaissance mission plan. First, we model the unmanned ground vehicle, small tactical vehicle, and combatant as an agent concept. Next, we implement the proposed agent behavior rules, e.g., maneuver, detection, route determination, and combatant's dismount point selection, by NetLogo. Considering the conditions of maneuver, enemy threat elements, reconnaissance assets, appropriate routes are automatically selected on the operation area. It is expected that it will be useful in analyzing unmanned ground system effects by calculating reconnaissance conducted area, time, and combat contribution ratio on the route.

Long-term Effects on Forest Biomass under Climate Change Scenarios Using LANDIS-II - A case study on Yoengdong-gun in Chungcheongbuk-do, Korea - (산림경관천이모델(LANDIS-II)를 이용한 기후변화 시나리오에 따른 산림의 생물량 장기변화 추정 연구 -충청북도 영동군 학산면 봉소리 일대 산림을 중심으로 -)

  • Choi, Young-Eun;Choi, Jae-Yong;Kim, Whee-Moon;Kim, Seoung-Yeal;Song, Won-Kyong
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.22 no.5
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    • pp.27-43
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    • 2019
  • This study applied the LANDIS-II model to the forest vegetation of the study area in Yeongdong-gun, Korea to identify climate effects on ecosystems of forest vegetation. The main purpose of the study is to examine the long-term changes in forest aboveground biomass(AGB) under three different climate change scenarios; The baseline climate scenario is to maintain the current climate condition; the RCP 4.5 scenario is a stabilization scenario to employ of technologies and strategies for reducing greenhouse gas emissions; the RCP 8.5 scenario is increasing greenhouse gas emissions over time representative with 936ppm of $CO_2$ concentration by 2100. The vegetation survey and tree-ring analysis were conducted to work out the initial vegetation maps and data for operation of the LANDIS model. Six types of forest vegetation communities were found including Quercus mongolica - Pinus densiflora community, Quercus mongolica community, Pinus densiflora community, Quercus variabilis-Quercus acutissima community, Larix leptolepis afforestation and Pinus koraiensis afforestation. As for changes in total AGB under three climate change scenarios, it was found that RCP 4.5 scenario featured the highest rate of increase in AGB whereas RCP 8.5 scenario yielded the lowest rate of increase. These results suggest that moderately elevated temperatures and $CO_2$ concentrations helped the biomass flourish as photosynthesis and water use efficiency increased, but huge increase in temperature ($above+4.0^{\circ}C$) has resulted in the increased respiration with increasing temperature. Consequently, Species productivity(Biomass) of trees decrease as the temperature is elevated drastically. It has been confirmed that the dominant species in all scenarios was Quercus mongolica. Like the trends shown in the changes of total AGB, it revealed the biggest increase in the AGB of Quercus mongolica under the RCP 4.5 scenario. AGB of Quercus mongolica and Quercus variabilis decreased in the RCP 4.5 and RCP 8.5 scenarios after 2050 but have much higher growth rates of the AGB starting from 2050 under the baseline scenario. Under all scenarios, the AGB of coniferous species was eventually perished in 2100. In particular they were extinguished in early stages of the RCP 4.5 and RCP 8.5 scenarios. This is because of natural selection of communities by successions and the failure to adapt to climate change. The results of the study could be expected to be effectively utilized to predict changes of the forest ecosystems due to climate change and to be used as basic data for establishing strategies for adaptation climate changes and the management plans for forest vegetation restoration in ecological restoration fields.

An Evaluation on the Food Safety Policy of the EU after Mad Cow Disease Crisis : Social Welfare and Political Economic Perspective (광우병 위기 이후 도입된 유럽연합의 식품안전정책에 대한 평가 : 사회후생 및 정치경제적 관점)

  • Park, Kyung-Suk
    • International Area Studies Review
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    • v.22 no.3
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    • pp.255-292
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    • 2018
  • This paper evaluates the new food policy adopted by the European Union to enhance the food safety after the mad cow crisis occurred in 1990's. Newly introduced rules at the EU level are characterized by two features. Firstly, an important part of them have the form of Regulation which is a binding legislative to all member countries. Secondly, most of them are horizontally applied to the whole food industry, irrespective of their kinds of performance, hygiene or labelling. According to theoretical studies on this topic, any food safety regulation for solving adverse selection problem or reducing negative externality in food consumption should be fine-tuning depending on the concrete demand and costs conditions of the food sector concerned. In this theoretical perspective, the food safety laws introduced at EU level after mad cow crisis have been over-regulated for improving social welfare. The true motivation for the transfer of the policy competence on food safety to the Union level is political rather than economic. Our analysis with a political economic perspective shows that how the EU food regulations have been embraced not only by the governments of member countries, but also by diverse interest groups like food processor & distributors, consumers and agro-livestock groups, and that they have been used as protectionist purpose specially against non-member developing countries. Taking into account the fact that the basic aim to form the Union is to establish a single market to enhance economic efficiency at the Union level, the EU is required to adopt some policy actions to reduce negative effects of too restrictive food safety regulations.

Improving Efficiency of Food Hygiene Surveillance System by Using Machine Learning-Based Approaches (기계학습을 이용한 식품위생점검 체계의 효율성 개선 연구)

  • Cho, Sanggoo;Cho, Seung Yong
    • The Journal of Bigdata
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    • v.5 no.2
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    • pp.53-67
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    • 2020
  • This study employees a supervised learning prediction model to detect nonconformity in advance of processed food manufacturing and processing businesses. The study was conducted according to the standard procedure of machine learning, such as definition of objective function, data preprocessing and feature engineering and model selection and evaluation. The dependent variable was set as the number of supervised inspection detections over the past five years from 2014 to 2018, and the objective function was to maximize the probability of detecting the nonconforming companies. The data was preprocessed by reflecting not only basic attributes such as revenues, operating duration, number of employees, but also the inspections track records and extraneous climate data. After applying the feature variable extraction method, the machine learning algorithm was applied to the data by deriving the company's risk, item risk, environmental risk, and past violation history as feature variables that affect the determination of nonconformity. The f1-score of the decision tree, one of ensemble models, was much higher than those of other models. Based on the results of this study, it is expected that the official food control for food safety management will be enhanced and geared into the data-evidence based management as well as scientific administrative system.

Evaluation of Regional Adaptability in Introduced Super Sweet Corn Hybrids and Heritability of Agronomic Traits (도입 초당옥수수 교잡종의 지역 적응성 및 농업 형질의 유전력 평가)

  • Lee, Shin-Young;Kang, Jong-won;Wang, Seung-hyun;Park, Tai-choon;Chung, Jong-Wook;So, Yoon-Sup
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.66 no.2
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    • pp.130-137
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    • 2021
  • This study evaluated newly introduced, commercial super sweet corn hybrids (Zea mays L.) for their potential as breeding materials. Agronomic traits were measured and variance components were obtained using a linear mixed model to estimate the heritability. The trials were carried out in 2018 at two locations (Haenam and Oksan in South Korea). All traits had low heritability, except for mid tasseling and silking days. These traits with low heritability mostly had low genetic variance component estimate. In case of ear height ratio, significant genotype by location appeared to be responsible for low genetic variance, which in turn led to low heritability. Low heritability estimates from the trials with commercial hybrids were perhaps because those hybrids were highly improved for commercial success. Hence, this does not necessarily point to them having poor potential as breeding materials. To overcome low heritability, significant genotype by environment interaction, and achieve high selection efficiency, intermating among hybrids is recommended to create new recombinants before inbred line development.