• Animal Systematics, Evolution and Diversity
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• v.27 no.1
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• pp.25-33
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• 2011

Three morphospecies of the genus Uronychia, i.e. U. setigera Calkins, 1902, U. binucleata Young, 1922, and U. multicirrus Song, 1997, were collected from the coastal waters of Gumjin-ri on the East Sea and the public waterfront of Incheon on the Yellow Sea in Korea, respectively. These species are described based on live observation, protargol impregnation, silver nitrate impregnation, and their morphometrics. Diagnostic keys for these species are also provided. In addition, their small subunit ribosomal DNA sequences were compared with previously known sequences of Uronychia species. Diagnostics of three Uronychia species are as follows: U. setigera: $50-80\;{\mu}m$ long in vivo, oval-shaped, 2 macronuclear nodules (Ma), 1 spur on the left margin, 11 adoral membranelles (AM) 1, 4 AM2, 1 buccal cirrus (BC), 4 frontal cirri (FC), 3 left marginal cirri (LMC), 2 ventral cirri (VC), 5 transverse cirri (TC), 3 caudal cirri (CC), 6 dorsal kineties (DK), and approximately 23 cilia in the leftmost kinety. U. binucleata: $70-110\;{\mu}m$ long in vivo, oval to slightly rectangular shaped, 2 Ma, 1 micronucleus (Mi), 2 spurs on the posterior region, 11 AM1, 4 AM2, 1 BC, 4 FC, 3 LMC, 2 VC, 5 TC, 3 CC, 6 DK, and approximately 37 cilia in the leftmost kinety. U. multicirrus: $140-200\;{\mu}m$ long in vivo, oval to slightly rectangular shaped, ca. 7 Ma, 1 Mi, 11 AM1, 4 AM2, 1 BC, 4 FC, 3 LMC, approximately 8 VC, 5 TC, 3 CC, and 6 DK. This study presents the first record of this genus in Korea.

• Korean Journal of Ichthyology
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• v.22 no.3
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• pp.186-194
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• 2010

Seasonal variation in species composition and abundance of fish assemblage in the coastal waters off Gori were determined using monthly samples collected by a three-side fyke net in 2006. Of a total of 59 fishes collected, the dominant species were Trachurus japonicus, Mugil cephaIus, Konosirus punctatus, Apogon lineatus, Chelidonichthys spinosus, Ditrema temmincki, Sebastes schlegeli and Apogon semilineatus. These 8 fishes accounted for 92.7% of the total number of individuals collected. The number of fish species, number of individuals, biomass and species diversity indices fluctuated with the seasons. The peak number of fishes occurred in December, whereas biomass of fishes was the highest in March. The number and biomass of fishes were lower in January corresponded with the low temperatures, and the diversity indices were lower in December than in any other month.

• Journal of Microbiology
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• v.43 no.3
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• pp.219-227
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• 2005

Little is known about the bacterial communities associated with the plants inhabiting sand dune ecosystems. In this study, the bacterial populations associated with two major sand dune plant species, Calystegia soldanella (beach morning glory) and Elymus mollis (wild rye), growing along the costal areas in Tae-An, Chungnam Province, were analyzed using a culture-dependent approach. A total of 212 bacteria were isolated from the root and rhizosphere samples of the two plants, and subjected to further analysis. Based on the analysis of the 16S rDNA sequences, all the bacterial isolates were classified into six major phyla of the domain Bacteria. Significant differences were observed between the two plant species, and also between the rhizospheric and root endophytic communities. The isolates from the rhizosphere of the two plant species were assigned to 27 different established genera, and the root endophytic bacteria were assigned to 21. Members of the phylum Gammaproteobacteria, notably the Pseudomonas species, comprised the majority of both the rhizospheric and endophytic bacteria, followed by members of Bacteroidetes and Firmicutes in the rhizosphere and Alphaproteobacteria and Bacteroidetes in the root. A number of isolates were recognized as potentially novel bacterial taxa. Fifteen out of 27 bacterial genera were commonly found in the rhizosphere of both plants, which was comparable to 3 out of 21 common genera in the root, implying the host specificity for endophytic populations. This study of the diversity of culturable rhizospheric and endophytic bacteria has provided the basis for further investigation aimed at the selection of microbes for the facilitation of plant growth.

• The Korean Journal of Mycology
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• v.37 no.2
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• pp.121-129
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• 2009

In 2007, a total of 77 isolates of Fusarium spp. were obtained from ear rot symptoms of corns collected from 5 locations in Gangwon Province, Korea. The fungal isolates were identified based on their morphological features. Out of the isolates, fifteen isolates were identified as Fusarium verticillioides which formed microconidia in long chains on monophialides. Four isolates were identified as F. subglutinans which formed microconida only on false heads. Six isolates were identified as F. graminearum which produced red pigment in PDA culture. Besides these Fusarium species, F. napiform, F. nygamai, and F. oxysporum were identified from the rest isolates. To assess for genetic diversity of the isolates, a random amplified polymorphic DNA(RAPD) technique was carried out using URP primers. The results from the RAPD analysis showed that the isolates from corn were divided into 6 groups. These RAPD groups of the Fusarium species corresponded to morphological characters of the Fusarium species. The phylogenetic analysis of most isolates by DNA sequencing of EF-1$\alpha$ gene corresponded to morphological characters of the Fusarium species. The results of pathogenicity tests by two inoculation methods revealed that F. verticillioides, F. graminearum and F. subglutinans are strongly pathogenic to corn stalks.

• Horticulture, Environment, and Biotechnology : HEB
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• v.59 no.6
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• pp.865-873
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• 2018

Allium ochotense and Allium microdictyon are commonly known as 'Mountain garlic' and are popular, economically important species in many countries such as Korea, China, and Mongolia. Their leaves are used as culinary side dishes and in traditional medicines. In Korea, these two species are at risk of extinction due to damage to their natural habitat and thus, conservation and breeding programs are needed. However, their identification relies mostly on morphological data, which is limited and until recently, led to classifying these two species under A. victorialis. In the present study, a simple and reliable method of molecular identification was developed to distinguish A. ochotense from A. microdictyon that targets four barcoding regions: the internal transcribed spacer (ITS), the maturase K gene (matK), the chloroplast psbA-trnH intergenic region, and the ribulose-bisphosphate carboxylase large subunit gene (rbcL). Single nucleotide polymorphisms (SNPs) were found in ITS and matK regions, and species-specific primers were designed based solely on the SNP at position 680 of the ITS region that could differentiate A. ochotense from A. microdictyon. Using these primers in amplification refractory mutation system (ARMS)-PCR, A. ochotense, and A. microdictyon could be simultaneously and efficiently distinguished. This study is the first to report a simple, rapid, and efficient method for discriminating A. ochotense and A. microdictyon, indicating the utility of species-specific markers in the development of conservation and breeding programs.

• Journal of Forest and Environmental Science
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• v.38 no.3
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• pp.159-173
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• 2022

Genus of Rhododendron has been used in traditional medicine since ancient times and is known to be effective in immune function, inflammation, and cold symptoms. And the reason for this activity is the flavanonol type among flavonoids in the genus of Rhododendron. Among the flavanonol types, Taxifolin-3-O-arabinopyranoside was isolated from the root of native R. mucronulatum in Korea, and the structure was finally identified through HPLC, LC-MS/MS, ¹H-NMR, and ¹³C-NMR. Taxifolin-3-O-arabinopyranoside is a compound mainly found in R. mucronulatum, a representative species of the genus of Rhododendron, and exhibits antioxidant, anti-inflammatory, and anti-atopic activities. In this study, Taxifolin-3-O-arabinopyranoside was chemotaxonomic significant in 5 species of the genus Rhododendron native to Korea (R. mucronulatum, R. mucronulatum var. ciliatum, R. schlippenbachii, R. yedoense var. Poukhanense, R. japonicum for. Flavum). Compared with the existing literature, Taxifolin-3-O-arabinopyranoside was identified for the first time in 4 species of Rhododendron except for the R. mucronulatum.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.56 no.1
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• pp.54-65
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• 2023

Effect of environmental factors on the seasonal variations of zooplankton communities was investigated in the semi-closed Yeoja Bay, Korea from February, April to August, and November 2021. Out of a total 49 species of zooplankton were collected with a predominant of neritic copepods (mainly Paracalanus orientalis, Acartia omorii, Acartia ohtsukai, Centropages abdominalis, Ditrichocorycaeus affinis, and Oithona sp.), accounting for 58.9% of the total abundance of zooplankton. The diversity indices indicated a relatively highest in July, suggesting that diversity is influenced by seasonal temperature, N. scintillans, and neritic copepods species. A cluster analysis with non-metric multidimensional scaling revealed four groups of zooplankton communities. The February sample clustered into Group A, having the lowest mean total abundance and species diversity of zooplankton, consisting mainly of N. scintillans located the whole region. Cluster Group B from the spring season (April to May) and contained the species diversity with some neritic copepods. Cluster Group C from the summer season (June to August) mainly comprised P. orientalis, A. ohtsukai, Oithona sp., and hydromedusae. Cluster Group D from the autumn season (November) mainly comprised P. orientalis, Temora discaudata. Redundancy analysis indicated that abundance is positively correlated with temperature, salinity, and pico chlorophyll-a concentrations. This study showed that planktonic larvae (such as branchyura larvae) and some copepods (including A. omorii, A. ohtsukai, C. sinicus, and C. abdominalis) were significantly vulnerable to zooplankton community of temperature, salinity, and pico chlorophyll-a concentrations.

• Journal of Veterinary Science
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• v.25 no.3
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• pp.39.1-39.11
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• 2024

Importance: Salmonella outbreaks linked to poultry meat have been reported continuously worldwide. Therefore, Salmonella contamination of poultry meats in slaughterhouses is one of the critical control points for reducing disease outbreaks in humans. Objective: This study examined the carry-over contamination of Salmonella species through the entire slaughtering process in South Korea. Methods: From 2018 to 2019, 1,097 samples were collected from the nine slaughterhouses distributed nationwide. One hundred and seventeen isolates of Salmonella species were identified using the invA gene-specific polymerase chain reaction, as described previously. The serotype, phylogeny, and antimicrobial resistance of isolates were examined. Results: Among the 117 isolates, 93 were serotyped into Salmonella Mbandaka (n = 36 isolates, 30.8%), Salmonella Thompson (n = 33, 28.2%), and Salmonella Infantis (n = 24, 20.5%). Interestingly, allelic profiling showed that all S. Mbandaka isolates belonged to the lineage of the sequence type (ST) 413, whereas all S. Thompson isolates were ST292. Moreover, almost all S. Thompson isolates (97.0%, 32/33 isolates) belonging to ST292 were multidrug-resistant and possessed the major virulence genes whose products are required for full virulence. Both serotypes were distributed widely throughout the slaughtering process. Pulsed-field gel electrophoretic analysis demonstrated that seven S. Infantis showed 100% identities in their phylogenetic relatedness, indicating that they were sequentially transmitted along the slaughtering processes. Conclusions and Relevance: This study provides more evidence of the carry-over transmission of Salmonella species during the slaughtering processes. ST292 S. Thompson is a potential pathogenic clone of Salmonella species possibly associated with foodborne outbreaks in South Korea.

• Korean journal of applied entomology
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• v.54 no.3
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• pp.233-245
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• 2015

The Baekdudaegan Mountain Range is home to a wide range of organisms inhabiting the Korean Peninsula. This study monitored butterfly communities of Guryongryeong (Myeonggye-ri) and Gojingkyeong (Seobyeok-ri) from April to September in 2013 to 2014, and the results were compared with previous data to determine changes in their distribution. We found 1,098 butterflies of 65 different species in Myeonggye-ri, and 1,161 butterflies of 63 different species in Seobyeok-ri. Comparing the two regions, 13 species appeared only in Seobyeok-ri and 15 species appeared only in Myeonggae-ri. When species were ranked according to number of individuals, the top species three species were as follows: Artogeia melete (127, 11.6%), A. napi (100, 9.1%), and Papilio maackii (90, 8.2%) in Myeonggye-ri; and Libythea celtis (146, 12.6%), A. napi (134, 11.5%), and Polygonia c-aureum (69, 5.9%) in Seobyeok-ri. The number of species with fewer than three individuals each was 24 in Myeonggye-ri and 23 in Seobyeok-ri, accounting for a high percentage among the total number of species. The similarities between the two regions were relatively high, and many of the butterflies are on the Red List of Korea. Compared with previous distribution data, there were no significant changes. This consistency indicates that the butterflies of the Baekdudaegan Mountain Range have been conserved well, and therefore the continuity in the Baekdudaegan Mountain Range is necessary to keep in the big picture.

• Journal of Food Hygiene and Safety
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• v.29 no.1
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• pp.53-59
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• 2014

This study was carried out to investigate the effect on the growth and antioxidant activities of Cichorium intybus L.(CLE), Cichorium intybus L. var. folisum 'treviso' (CLET), Cichorium intybus L. var. folisum 'rosaitaliana' (CLER) in hydroponics added with $Cr^{3+}$ or Selenium (Se) for 4 weeks. Total polyphenol, total flavonoids contents and FRAP values of three species of chicory were grown hydroponically with $Cr^{3+}$ or Se were increased. These extracts were also showed stronger DPPH and ABTS scavenging activity than chicory extracts. In particular, chicories added with $Cr^{3+}$ had higher antioxidant activities than chicories added with Se. CLER and CLE extracts added with $Cr^{3+}$ were also showed ${\alpha}$-glucosidase inhibition activities. These results indicate that chicories were cultivated in culture fluid added with $Cr^{3+}$ or Se could be used as high functional vegetables.