• Title/Summary/Keyword: Sample preparation method

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Fabrication and Application of Micro Polymer Chip Platform for Rare Cell Sample Preparation (희귀 세포 샘플 준비를 위한 마이크로 폴리머 칩 플랫폼 제작 및 활용)

  • Park, Taehyun
    • Journal of the Korea Convergence Society
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    • v.9 no.3
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    • pp.217-222
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    • 2018
  • In this paper, a new micro polymer chip platform and protocol were developed for rare cell sample preparation. The proposed platform and protocol overcome the current limitation of the dilution method which is based on statistics and the FACS method which expensive and requires fluorescence staining. It allows collecting exact number of target cells simply and selectively because the cells are visually confirmed during the collecting process. The collected cells can be transported or spiked into a desired locations, such as a microchamber, without cell loss. This research may applicable not only to a rare cell sample preparation for Lab on a Chip cancer diagnosis, but also to a single/double/multiple cell sample preparation for a cell analysis field. To verify this platform and protocol, five human breast cancer cells (MCF-7) were collected and transported into a hemocytometer chamber.

A Study of Simple α Source Preparation Using a Micro-coprecipitation Method

  • Lee, Myung Ho;Park, Tae-Hong;Song, Byung Chul;Park, Jong Ho;Song, Kyuseok
    • Bulletin of the Korean Chemical Society
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    • v.33 no.11
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    • pp.3745-3748
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    • 2012
  • This study presents a rapid and simple ${\alpha}$ source preparation method for a radioactive waste sample. The recovery of $^{239}Pu$, $^{232}U$ and $^{243}Am$ using a micro-coprecipitation method was over 95%. The ${\alpha}$-peak resolution of Pu and Am isotopes through the micro-coprecipitation method is enough to discriminate the Pu and Am isotopes from other Pu and Am isotopes. The determination of the Pu and Am isotopes using the micro-coprecipitation method was applied to the radioactive waste sample, so that the activity concentrations of the Pu and Am isotopes using the micro-coprecipitation method in the radioactive waste sample were similar to those using the electrodeposition method.

Establishment of Sample Preparation Method for PCR Detection of Clostridium perfringens from Agricultural Products (PCR 법을 이용한 농산물 중 Clostridium perfringens 검출을 위한 전처리법 확립)

  • Choi, Song-Yi;Seo, Min-Kyoung;Yoon, Jae-Hyun;Rajalingam, Nagendran;Hwang, Injun;Kim, Se-Ri
    • Journal of Food Hygiene and Safety
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    • v.36 no.1
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    • pp.93-99
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    • 2021
  • This study was undertaken to compare the efficacy of different sample preparation (stomaching, pulsifying, and sonication) and DNA extraction methods (boiling and commercial kit) for detection of enterotoxin-producing Clostridium perfringens from produce by polymerase chain reaction (PCR). Each produce type was inoculated at concentrations of 102, 103, 104, 105, 106, and 107 spores/g. Produce inoculated with spores was treated with three sample preparation methods, and DNA was extracted by boiling method and a commercial kit, followed by PCR. The detection limit of stomached samples was lower than that of pummeled and sonicated samples by 10-100 times. Moreover, the DNA extraction efficiency of the commercial kit was found to be superior to that of boiling. In particular, the PCR efficiency of cherry tomato and perilla leaf samples was greatly affected by sample preparation and DNA extraction method. These data suggest that DNA extraction with a commercial kit after pulsification is an optimum sample preparation method for detection of C. perfringens by PCR.

Specimen Preparation for Scanning Electron Microscope Using a Converted Sample Stage

  • Kim, Hyelan;Kim, Hyo-Sik;Yu, Seungmin;Bae, Tae-Sung
    • Applied Microscopy
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    • v.45 no.4
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    • pp.214-217
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    • 2015
  • This study introduces metal coating as an effective sample preparation method to remove charge-up caused by the shadow effect during field emission scanning electron microscope (FE-SEM) analysis of dynamic structured samples. During a FE-SEM analysis, charge-up occurs when the primary electrons (input electrons) that scan the specimens are not equal to the output electrons (secondary electrons, backscattered electrons, auger electrons, etc.) generated from the specimens. To remove charge-up, a metal layer of Pt, Au or Pd is applied on the surface of the sample. However, in some cases, charge-up still occurs due to the shadow effect. This study developed a coating method that effectively removes charge-up. By creating a converted sample stage capable of simultaneous tilt and rotation, the shadow effect was successfully removed, and image data without charge-up were obtained.

Influence of Sampling and Preparation Method on Stress-Strain Behavior of Weathered Granite Soils (채취방법과 성형방법이 화강 풍화토의 응력-변형률 거동에 미치는 영향)

  • Cho, Wan-Jei
    • Journal of the Korean Society of Safety
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    • v.25 no.2
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    • pp.55-64
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    • 2010
  • Since various weathered soils are encountered in many domestic construction sites, it is necessary to estimate characteristics of natural weathered soils. However, the remolded sample of weathered soils are commonly used to estimate their characteristics because it is very difficult to sample weathered soils in undisturbed states. However, it is well known that the behavior of remolded sample is different from that of the undisturbed sample particularly in the dynamic response, because the particle structure of undisturbed sample maintains its original structure from the mother rock. Thus, to evaluate the influence of sampling method and preparation method on stress-strain behavior, the resonant column tests were performed on the block, tube samples, remolded samples with static compression and remolded samples with tamping of the weathered granite soils. The shear modulus of the remolded sample with tamping is larger than the other samples presumably due to the high tamping pressure enough to induce particle breakage. The tube samples show larger damping ratios than other samples. Furthermore, one-dimensional ground response analysis was performed to compare the results qualitatively.

Sample Preparation and Nucleic Acid-based Technologies for the Detection of Foodborne Pathogens (식중독균의 검출을 위한 시료전처리 및 핵산기반의 분석기술)

  • Lim, Min-Cheol;Kim, Young-Rok
    • Food Engineering Progress
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    • v.21 no.3
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    • pp.191-200
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    • 2017
  • There have been great efforts to develop a rapid and sensitive detection method to monitor the presence of pathogenic bacteria in food. While a number of methods have been reported for bacterial detection with a detection limit to a single digit, most of them are suitable only for the bacteria in pure culture or buffered solution. On the other hand, foods are composed of highly complicated matrices containing carbohydrate, fat, protein, fibers, and many other components whose composition varies from one food to the other. Furthermore, many components in food interfere with the downstream detection process, which significantly affect the sensitivity and selectivity of the detection. Therefore, isolating and concentrating the target pathogenic bacteria from food matrices are of importance to enhance the detection power of the system. The present review provides an introduction to the representative sample preparation strategies to isolate target pathogenic bacteria from food sample. We further describe the nucleic acid-based detection methods, such as PCR, real-time PCR, NASBA, RCA, LCR, and LAMP. Nucleic acid-based methods are by far the most sensitive and effective for the detection of a low number of target pathogens whose performance is greatly improved by combining with the sample preparation methods.

Method for Simultaneous Determination of Cyanotoxins in Water by LC-MS/MS (액체크로마토그래프/질량분석기를 이용한 수중 남조독소물질 동시분석법)

  • Kim, Jeong-Hee;Yun, Mi-Ae;Kim, Hak-Chul
    • Journal of Korean Society on Water Environment
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    • v.25 no.4
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    • pp.597-605
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    • 2009
  • Algae bloom occurred in reservoir in summer can cause taste and odor in water and disturb the flocculation and sedimentation processes in water treatment plant and cause sand filter plugging. It was also reported that microcystins, anatoxin and saxitoxin released from cyanobacteria had acute toxic effects on liver and nervous system. For these reasons, many advanced countries inclusive of WHO set the guideline for these toxins and cyanotoxins have been managed with regular monitoring in Korea as well. However, complex sample preparation steps such as a solid phase extraction (SPE) and derivatization are required with an existing analysis method with HPLC. We needed to improve an analysis method for low extraction efficiency and long sample preparation time. In this study, we have established a new LC/MS/MS method which can simultaneously determine 6 cyanotoxins (Microcystins-LR, Microcystins-RR, Microcystins-YR, Anatoxin-a, Saxitoxin, Neosaxitoxin) with only simple filtration step. When $75{\mu}L$ filterated sample was injected onto the LC-MS/MS, the recovery ranged from 86% to 112% and the MDL was $0.025{\sim}0.581{\mu}g/L$. We can make the MDL be lower than the guideline ($1{\sim}3{\mu}g/L$) of advanced countries with simple preparation.

Electron Microscopy for the Morphological Characterization of Nanocellulose Materials (전자현미경을 이용한 나노셀룰로오스 물질의 형태학적 특성 분석 연구)

  • Kwon, Ohkyung;Shin, Soo-Jeong
    • Journal of Korea Technical Association of The Pulp and Paper Industry
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    • v.48 no.1
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    • pp.5-18
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    • 2016
  • Electron microscopy is an important investigation and analytical method for the morphological characterization of various cellulosic materials, such as micro-crystalline cellulose (MCC), microfibrillated cellulose (MFC), nanofibrillated cellulose (NFC), and cellulose nanocrystals (CNC). However, more accurate morphological analysis requires high-quality micrographs acquired from the proper use of an electron microscope and associated sample preparation methods. Understanding the interaction of electron and matter as well as the importance of sample preparation methods, including drying and staining methods, enables the production of high quality images with adequate information on the nanocellulosic materials. This paper provides a brief overview of the micro and nano structural analysis of cellulose, as investigated using transmission and scanning electron microscopy.

Optimization of One-step Extraction/Methylation Method for Analysis of Fatty Acid Composition in Brown Rice

  • Cho, Kyoung-Shim;Kim, Hyun-Ju;Moon, Sang-Mi;Kang, Jung-Hoon;Lee, Young-Sang
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.51 no.1
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    • pp.89-94
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    • 2006
  • Traditionally fatty acid composition used to be analysed by a GC and the sample preparation process includes lipid extraction from sample and subsequent methyl esters preparation, which are time-consuming and cumbersome. As an alternative, simultaneous extraction/methylation methods are being developed for rapid and simplified sample preparation. To optimize one-step extraction/methylation method for analysis of fatty acid composition in brown rice, various reaction factors such as sample to reaction solution ratio, reaction time and temperature, shaking intensity were changed and resultant fatty acid composition data were evaluated in comparison with previous reports. The ratio of sample weight to reaction solution volume was the most critical factor in that higher sample to reaction solution ratio caused overestimation of palmitic acid and linoleic acid composition, resulting in underestimation of oleic acid. Lower reaction temperature also induced overestimation of linoleic acid and underestimation of oleic acid. Reaction duration and the intensity of shaking prior to and during the reaction, however, caused no significant changes in analysis results. In conclusion, the optimum condition was mixing 5 grains (about 0.2 g) of brown rice with $680{\mu}L$ of extraction/methylation mixture and $400{\mu}L$ of heptane, followed by reaction at $80^{\circ}C$ for 2 hours.

Comparison of QuEChERS and Solid Phase Extraction for Accurate Determination of Pesticide Residues in Kimchi Cabbage and Strawberry using Isotope Dilution Mass Spectrometry

  • Seonghee Ahn;Kebede Gebeyehu Mekete;Byungjoo Kim
    • Mass Spectrometry Letters
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    • v.14 no.4
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    • pp.178-185
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    • 2023
  • QuEChERS is used worldwide as a universal sample preparation method with many benefits, such as being quick, easy, cheap, effective, rugged and safe. This study examined whether QuEChERS can be employed in isotope dilution mass spectrometry (ID-MS) for accurate analysis of pesticides in food. The ratios of fortified values and measured values of malathion and fenitrothion using the QuEChERS method were compared with those using the solid phase extract (SPE) method which was previously used in this laboratory. The separations of the two pesticides on DB-5MS and VF-1701MS columns were compared. Malathion and fenitrothion were fortified into kimchi cabbage and pretreated with the QuEChERS method and the SPE method. The results obtained using the DB-5MS column varied according to the sample preparation method, column and pesticide level. Using the VF-1701 column, ratios were 98-102% by both QuEChERS and Carb/NH2 SPE method for all fortification level. Malathion and fenitrothion were fortified into strawberry samples for comparison with kimchi cabbage. The results for the strawberry samples indicated that the ratios were not influenced by the sample preparation methods or GC column. The QuEChERS method could be acceptable in the ID-MS method for pesticide residue analysis in food, however other conditions should be carefully considered for accurate determination, such as the column, amount of analyte and food matrix.