• Title/Summary/Keyword: Reference Station

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Whole-Genome Resequencing Analysis of Hanwoo and Yanbian Cattle to Identify Genome-Wide SNPs and Signatures of Selection

  • Choi, Jung-Woo;Choi, Bong-Hwan;Lee, Seung-Hwan;Lee, Seung-Soo;Kim, Hyeong-Cheol;Yu, Dayeong;Chung, Won-Hyong;Lee, Kyung-Tai;Chai, Han-Ha;Cho, Yong-Min;Lim, Dajeong
    • Molecules and Cells
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    • v.38 no.5
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    • pp.466-473
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    • 2015
  • Over the last 30 years, Hanwoo has been selectively bred to improve economically important traits. Hanwoo is currently the representative Korean native beef cattle breed, and it is believed that it shared an ancestor with a Chinese breed, Yanbian cattle, until the last century. However, these two breeds have experienced different selection pressures during recent decades. Here, we whole-genome sequenced 10 animals each of Hanwoo and Yanbian cattle (20 total) using the Illumina HiSeq 2000 sequencer. A total of approximately 3.12 and 3.07 billion sequence reads were mapped to the bovine reference sequence assembly (UMD 3.1) at an average of approximately 10.71- and 10.53-fold coverage for Hanwoo and Yanbian cattle, respectively. A total of 17,936,399 single nucleotide polymorphisms (SNPs) were yielded, of which 22.3% were found to be novel. By annotating the SNPs, we further retrieved numerous nonsynonymous SNPs that may be associated with traits of interest in cattle. Furthermore, we performed whole-genome screening to detect signatures of selection throughout the genome. We located several promising selective sweeps that are potentially responsible for economically important traits in cattle; the PPP1R12A gene is an example of a gene that potentially affects intramuscular fat content. These discoveries provide valuable genomic information regarding potential genomic markers that could predict traits of interest for breeding programs of these cattle breeds.

Generation of High Resolution Scenarios for Climate Change Impacts on Water Resources (II): Runoff Scenarios on Each Sub-basins (수자원에 대한 기후변화 영향평가를 위한 고해상도 시나리오 생산(II): 유역별 유출시나리오 구축)

  • Jung, Il-Won;Bae, Deg-Hyo;Im, Eun-Soon
    • Journal of Korea Water Resources Association
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    • v.40 no.3
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    • pp.205-214
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    • 2007
  • The objective of this study is to generate the regional scale runoff scenarios by using IPCC SRES A2 climate change scenario for analyzing the spatial variation of water resources in Korea. The PRMS model was adopted to simulate long-term stream discharge. To estimate the PRMS model parameters on each sub-basin, the streamflow data at 6 dam sites and Rosenbrock's scheme are used for model parameter calibration and those parameters are translated to ungauged catchments by regionalization method. The other 3 dam sites are selected for the verification of the adequateness of regionalized model parameters in ungagued catchments. The statistical results show that the simulated flows by using regionalized parameters well agree with observed ones. The generated runoff scenarios by climate change are compared with observed data on 4 dam sites for the reference period. The consequences show that the selection of climate station for generating climate scenario affects the reliability of climate scenario at sub-basin. The comparison results of the stream flows between the 30-year baseline period (1971-2000) and future 90-year (2001-2030, 2031-2060, 2061-2090) show that the long-term mean annual runoff in the Han River has increasing trend, while the Nakdong, the Gum, the Youngsan and the Sumjin Rivers have decreasing trend.

A Study on Variation in Annual Water Balance (도시화에 따른 수문기후변화 I (연 물수지 변화 분석))

  • Rim, Chang-Soo;Chae, Hyo-Seok
    • Journal of Korea Water Resources Association
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    • v.40 no.7
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    • pp.555-570
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    • 2007
  • The effects of climatic changes owing to urbanization on annual water balance have been studied. In this study, 56 meteorological stations including Seoul metropolis in South Korea have been selected, and the area of study site is $314\;km^2$. The meteorological station is centrally located in the study area with a 10 km radius. Land use status of study area was examined to estimate the urbanization extent, so that annual actual evapotranspiration could be estimated. Annual runoff was estimated by annual water balance approach using the estimated annual actual evapotranspiration and measured annual precipitation. Annual actual evapotranspiration was estimated by applying experimental equation suggested by Zhang et al, (2001) which was evaluated from 250 watersheds all over the world. Study results show that reference evapotranspiration is tending upwards due to urbanization; therefore, it seems that climatic change due to urbanization may increase the amount of annual actual evapotranspiration. However, the increase of residential area due to urbanization in study area may decrease the amount of annual actual evapotranspiration. The study results indicate that urbanization effect on annual trend of precipitation was not significant. In urban area, annual runoff is directly affected by annual precipitation, and compared with annual precipitation, annual variation of actual evapotranspiration was not significant even though it was estimated by using annual precipitation. It seems that the effect of urbanization on annual actual evapotranspiration does not influence on annual runoff significantly, and that urbanization effect on annual runoff Is not significant.

Analysis of Sedimentation Around Jetties in the West Coast: based on field measurement and hydrodynamic modeling (서해연안 돌제구조물 주위의 침퇴적 해석: 실측 및 수동역학 모델에 의한 초기추정)

  • Suh, Seung-Won;Yoo, Gyeong-Sun;Lee, Hwa-Young
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.19 no.4
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    • pp.345-354
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    • 2007
  • A sedimentation analysis has been attempted to figure out sedimentation environment due to construction of coastal jetties, such as fish harbor dike, flow guided dike and jetty in shallow Kusipo area, in which tidal range marks up to 6.6 meters in spring tide. As an initial approach of understanding field measurement were done on several stations along reference lines with total station and photo analysis taken by remote controlled small air craft far one and half years. Also numerical tests were done by 2-D ADCIRC model considering dry-wet treatment to evaluate flow and bottom shear stress variations. According to direct measurement, deposition seems to be dominant on Kusipo beach. Model results show bottom shear stress lessens to $0.10{\sim}0.15\;N/m^2$ on most shadow zone of jetties and the inner zone is suffering sedimentation as a result of dike construction. However this is the first approach with limited analysis, thus it should be dealt further considering physical characteristics of bottom sediments in a complete sediment model on upcoming study.

Analysis of Positioning Performance According to the Condition of Multi-constellation GNSS (다중 위성항법시스템 이용조건에 따른 위성측위 성능 분석)

  • Park, Joon-Kyu;Um, Dae-Yong
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.17 no.4
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    • pp.567-572
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    • 2016
  • Many studies have been performed since the introduction of GPS in Korea. As a result, positioning using GNSS was fully proposed. On the other hand, most of these studies focused on accuracy but analytical studies on the GNSS status and the national GNSS infrastructure of Korea are lacking. In this study, the status of multi-constellation GNSS and National Geographic Information Institute's CORS (Continuous Operating Reference Station) were identified for the benefit and direction of GNSS infrastructure enhancement. As a result, it has been operating Multi-constellation GNSS, such as GPS, GLONASS, Galileo, COMPASS, and QZSS for surveying. In addition, improvement was presented by the number of satellites, precision, PDOP, etc. through the experiment about VRS and RTK using Multi-constellation GNSS. Upgrading the infrastructure for satellite surveying was identified as a priority consideration. In the future, if a Multi-constellation GNSS service is possible in VRS service, the satisfaction of public administration service will improve, which will contribute greatly to the advancement of a surveying infrastructure.

Comparative Experiments for the Improvement of NDGPS Signal Quality (NDGPS 관측자료의 품질향상을 위한 비교실험)

  • Sohn, Dong-Hyo;Park, Kwan-Dong;Kim, Hye-In;Kim, Du-Sik;Kee, Chang-Don
    • Journal of Navigation and Port Research
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    • v.36 no.8
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    • pp.625-630
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    • 2012
  • The DGNSS Central Office operates 17 DGNSS reference stations. Compared to the other DGNSS sites, the TEQC data quality of some sites is poorer. In this study, we tried to find out the causes that degrade the quality of GPS data for the purpose of improving the signal quality of the DGNSS stations. We selected the Chungju station that is the one of those stations with bad data quality. Through the on-site visit, we found that there is no signal-blocking obstacles. In addition to site surveys, we conducted two experiments; simultaneous observation considering environmental factors and comparison test through equipment replacements to check the malfunctioning of GPS equipments. In the simultaneous test results, we realized that environmental factors do not induce any bad effects on the data quality. In equipment replacement experiments, we confirmed that the data quality is of excellent quality when the test receiver was used instead of the original one installed at the site. When we replaced the antenna instead of the receiver, the data quality was bad. Through those two experiments, we concluded that the receiver is the main factor that degrades the signal quality.

Development of flow measurement method using drones in flood season (I) - aerial photogrammetry technique (드론을 이용한 홍수기 유량측정방법 개발(I) - 항공사진측량 기법 적용)

  • Lee, Tae Hee;Lim, Hyeokjin;Yun, Seong Hak;Kang, Jong Wan
    • Journal of Korea Water Resources Association
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    • v.53 no.12
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    • pp.1049-1057
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    • 2020
  • This study aimed to develop a flow measurement method using drone in flood season. Measuring flow in all branches is difficult to conduct annually due to budget and labor limitation, safety and river works. Especially when heavy rain like storm comes, changes in stage-discharge relationship should be reviewed; however, it is usually impeded by the aforementioned issues. To solve the problem, it developed a simple measuring method with a minimum of labor and time. A numeric map and numeric orthophoto coordinate of South Korea are mostly based on Transverse Mercator Projection (TM) in accordance with rectangular coordinate system and use World Geodetic Reference System 1980 (GRS80) oval figure for conversion. Applying a concept of aerial photogrammetry, it located four visible Ground Control Points (GCP) near the river at Uijeongbu-si (Singok Bridge) and Yeongdong-gun (Youngdong 2nd Bridge) station and measured the coordinates using VRS DGPS. Hovering at a same level, drones took orthophoto of water surface at an interval of 3 seconds. It defined the pictures with GRS80 TM coordinate system, a rectangular coordinate system and then conducted an orthometric correction using GCP coordinates. According to X and Y coordinate analysis, it estimated the distance between the floating positions at 3 seconds-intervals and calculated the flow through the flow area according to the flow path. This study attested applicability of the flow measurement method using drone in flood season by applying the rectangular coordinate system based on the concept of aerial photogrammetry.

Genetic diversity and selection of Tibetan sheep breeds revealed by whole-genome resequencing

  • Dehong Tian;Buying Han;Xue Li;Dehui Liu;Baicheng Zhou;Chunchuan Zhao;Nan Zhang;Lei Wang;Quanbang Pei;Kai Zhao
    • Animal Bioscience
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    • v.36 no.7
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    • pp.991-1002
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    • 2023
  • Objective: This study aimed to elucidate the underlying gene regions responsible for productive, phenotypic or adaptive traits in different ecological types of Tibetan sheep and the discovery of important genes encoding valuable traits. Methods: We used whole-genome resequencing to explore the genetic relationships, phylogenetic tree, and population genetic structure analysis. In addition, we identified 28 representative Tibetan sheep single-nucleotide polymorphisms (SNPs) and genomic selective sweep regions with different traits in Tibetan sheep by fixation index (Fst) and the nucleotide diversity (θπ) ratio. Results: The genetic relationships analysis showed that each breed partitioned into its own clades and had close genetic relationships. We also identified many potential breed-specific selective sweep regions, including genes associated with hypoxic adaptability (MTOR, TRHDE, PDK1, PTPN9, TMTC2, SOX9, EPAS1, PDGFD, SOCS3, TGFBR3), coat color (MITF, MC1R, ERCC2, TCF25, ITCH, TYR, RALY, KIT), wool traits (COL4A2, ERC2, NOTCH2, ROCK1, FGF5, SOX9), and horn phenotypes (RXFP2). In particular, a horn-related gene, RXFP2, showed the four most significantly associated SNP loci (g. 29481646 A>G, g. 29469024 T>C, g. 29462010 C>T, g. 29461968 C>T) and haplotypes. Conclusion: This finding demonstrates the potential for genetic markers in future molecular breeding programs to improve selection for horn phenotypes. The results will facilitate the understanding of the genetic basis of production and adaptive unique traits in Chinese indigenous Tibetan sheep taxa and offer a reference for the molecular breeding of Tibetan sheep.

Analysis of Coordinate Change about Domestic CORS by Earthquake (지진발생으로 인한 국내 상시관측소 좌표변화 분석)

  • Kim, Min-Gyu;Park, Joon-Kyu
    • Asia-pacific Journal of Multimedia Services Convergent with Art, Humanities, and Sociology
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    • v.8 no.3
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    • pp.467-475
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    • 2018
  • Recently earthquakes have been increasing worldwide, and the largest earthquake of 5.8 on the Richter scale occurred on September 12, 2016 in the Gyeongju area. After the earthquake, more than 200 aftershocks have occurred from January 2017 to December 2017. The largest earthquake in 2017 was a 4.3-magnitude earthquake near Pohang on November 15. In this study, we tried to analyze the coordinate change due to the earthquake using the data of the CORS(Continuously Operating Reference Station) in Korea. In order to analyze the change of coordinates due to the earthquake in Pohang area on November 15, 2017, data processing was performed by kinematic method. And from January 2017 to December 2017, observation data of 9 stations in Korea were analyzed by relative positioning method and the change of coordinates due to earthquake was analyzed. As a result of the study, it was possible to estimate the instantaneous coordinate change due to the earthquake through the kinematic positioning, and it was suggested that there is no change in the coordinates of the domestic CORS by the relative positioning results. After the 2017 Gyeongju earthquake, aftershocks continue to occur, and it is necessary to monitor the area continuously.

The Proposal on the Rational Reorganization of the Radio stations Management : Focusing on the Introduction of SDoC for Radio Inspection for Telco (무선국 관리의 합리적 개선방안에 관한 제안 - 무선국의 자기적합성선언 제도 도입 검토를 중심으로 -)

  • Ho-Yeong Kim;Won-Il Roh;Seong-Jhin Choi
    • The Journal of the Korea institute of electronic communication sciences
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    • v.18 no.5
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    • pp.737-746
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    • 2023
  • As the core infrastructure to lead technical innovation for the fourth industrial revolution, economic value and utilizations of radiowaves are increased rapidly. The objectives of this study are to recognize the growing trend of radio stations that transmit information using radiowaves, a limited resource of the country, and to propose developed plans for the radio stations operation system in line with the changing radio technology and use environment. To be specific, the detailed implementation procedures and methods of the system were derived in accordance with the government's plan to convert the complete inspection of radio stations into a SDoC(Self Declaration of Conformity) by the telco. SDoC is a policy that grants autonomy and responsibility for radio waves interference management to existing telecom operator recognized as having radio stations operating capabilities. It has significance in that the function of radio stations inspection, which is a representative technical regulation, is efficiently distributed to the government and the private sector. This study has significance in providing reference for expediting deregulation in the radiowaves management policy.