• Title/Summary/Keyword: RPB2

Search Result 72, Processing Time 0.026 seconds

Morphological and Molecular Characterization of Pseudocercospora chionanthi-retusi Causing Leaf Spot on Chionanthus retusus in Korea

  • Choi, In-Young;Abasova, Lamiya;Choi, Joon-Ho;Shin, Hyeon-Dong
    • Research in Plant Disease
    • /
    • v.28 no.2
    • /
    • pp.57-60
    • /
    • 2022
  • Leaves of Chionanthus retusus were found to be damaged by leaf spot disease associated with a fungus in Iksan, Korea. Leaf spots were angular to irregular, vein-limited, scattered, 1-8 mm diameter, brownish-gray to dark brown when dry, with heavy fructification. The pathogen causes premature defoliation of C. retusus plant and was identified as Pseudocercospora chionanthi-retusi based on morphological and molecular-phylogenetic analyses. The phylogenetic tree was constructed using multi-locus DNA sequence data of partial actin (actA), partial translation elongation factor 1-alfa (tef1), partial DNA-directed RNA polymerase II second largest subunit (rpb2) genes, and internal transcribed spacer regions. Current study provides detail morphological description of P. chionanthi-retusi on C. retusus in Korea, with supports of phylogenetic analysis and pathogenicity test.

Identification and Characterization of Alternaria iridiaustralis Causing Leaf Spot on Iris ensata in China

  • Luo, Huan;Tao, Ya Qun;Fan, Xiao Yan;Oh, Sang Keun;Lu, Hong Xue;Deng, Jian Xin
    • Mycobiology
    • /
    • v.46 no.2
    • /
    • pp.168-171
    • /
    • 2018
  • In 2016, a severe leaf spot disease was found on Iris ensata Thumb. in Nanjing, China. The symptom was elliptical, fusiform, or irregularly necrotic lesion surrounded by a yellow halo, from which a small-spored Alternaria species was isolated. The fungus was identified as Alternaria iridiaustralis based on morphological characteristics. The pathogenicity tests revealed that the fungus was the causal pathogen of the disease. Phylogenic analyses using sequences of ITS, gpd, endoPG, and RPB2 genes confirmed the morphological identification. This study is the first report of A. iridiaustralis causing leaf spots on I. ensata in China.

Morphology and Molecular Characterization of a Fungus from the Alternaria alternata Species Complex Causing Black Spots on Pyrus sinkiangensis (Koerle pear)

  • Aung, Sein Lai Lai;Liu, Hai Feng;Pei, Dong Fang;Lu, Bing Bin;Oo, May Moe;Deng, Jian Xin
    • Mycobiology
    • /
    • v.48 no.3
    • /
    • pp.233-239
    • /
    • 2020
  • A small-spored Alternaria was found from black spots of storaged Koerle pear (Pyrus sinkiangensis), one of the economically important fruit in Xinjiang province, China. The morphology is similar to A. limoniasperae but obviously different in secondary conidiophores and conidial septa. A phylogenetic analysis using sequence datasets of ITS, GAPDH, TEF1, RPB2, Alt a1, OPA10-2, and EndoPG genes revealed that it belonged to the Alternaria alternata complex group. Pathogenicity tests illustrated that the fungus was the causal pathogen of black spot on Koerle pear fruit.

Characterization and Pathogenicity of Alternaria vanuatuensis, a New Record from Allium Plants in Korea and China

  • Li, Mei Jia;Deng, Jian Xin;Paul, Narayan Chandra;Lee, Hyang Burm;Yu, Seung Hun
    • Mycobiology
    • /
    • v.42 no.4
    • /
    • pp.412-415
    • /
    • 2014
  • Alternaria from different Allium plants was characterized by multilocus sequence analysis. Based on sequences of the ${\beta}$-tubulin (BT2b), the Alternaria allergen a1 (Alt a1), and the RNA polymerase II second largest subunit (RPB2) genes and phylogenetic data analysis, isolates were divided into two groups. The two groups were identical to representative isolates of A. porri (EGS48-147) and A. vanuatuensis (EGS45-018). The conidial characteristics and pathogenicity of A. vanuatuensis also well supported the molecular characteristics. This is the first record of A. vanuatuensis E. G. Simmons & C. F. Hill from Korea and China.

First Report of Apple Decline Caused by Botryosphaeria sinensis in Korea

  • Lee, Seung-Yeol;Ten, Leonid N.;Back, Chang-Gi;Jung, Hee-Young
    • The Korean Journal of Mycology
    • /
    • v.49 no.3
    • /
    • pp.417-423
    • /
    • 2021
  • Apple decline symptoms were frequently observed on cv. Fuji apple orchards located in Gyeonggi, Gyeongbuk, and Gangwon provinces during surveys conducted from May until the end of September 2020. Three fungal strains were isolated from the margins of internal lesions of diseased apple trees, and their morphological characteristics were considered similar to Botryosphaeria sinensis. Phylogenetic analysis using internal transcribed spacer (ITS) regions, translation elongation factor 1-alpha (tef1), beta-tubulin (tub2), and the second largest subunit of RNA polymerase II (rpb2) gene sequences confirmed the closest relationship of isolates with B. sinensis at the species level. According to a pathogenicity test, the appearance of dark-brown discolorations and vascular necrosis on apple branches inoculated with the isolated strain KNUF-20-014 was observed. To the best of our knowledge, this is the first report of B. sinensis as the causal agent of apple disease in Korea.

Morphology and Molecular Phylogeny of Pseudocercospora fatouae Associated with Hypophyllous Leaf Mold on Fatoua villosa in Korea

  • Kui-Jae Lee;In-Young Choi;Lamiya Abasova;Joon-Ho Choi;Jung-Hee Park;Hyeon-Dong Shin
    • The Korean Journal of Mycology
    • /
    • v.51 no.2
    • /
    • pp.147-153
    • /
    • 2023
  • Dark brown leaf molds growing in a vein-limited pattern have been continuously observed on the lower leaf surface of Fatoua villosa in Korea. Fifteen samples deposited in the Korea University herbarium were examined for fungal morphological characterization. Two monoconidial isolates were obtained in 2022, and molecular analysis was performed based on a combined multigene dataset of the internal transcribed spacer (ITS) region and partial actin (actA), translation elongation factor 1-alpha (tef1), and DNA-directed RNA polymerase II second-largest subunit (rpb2). Based on morphological features and molecular phylogenetic analysis, the fungus Pseudocercospora fatouae was identified. To the best of our knowledge, it is the first study reporting the presence of P. fatouae on F. villosa in Korea.

Didymella gigantis sp. nov. Causing Leaf Spot in Korean Angelica

  • Gyo-Bin Lee;Ki Deok Kim;Weon-Dae Cho;Wan-Gyu Kim
    • Mycobiology
    • /
    • v.51 no.6
    • /
    • pp.393-400
    • /
    • 2023
  • During a disease survey in October 2019, leaf spot symptoms with a yellow halo were observed on Korean angelica (Anglica gigas) plants grown in fields in Pyeongchang, Gangwon Province, Korea. Incidence of diseased leaves of the plants in the investigated fields ranged from 10% to 60%. Morphological and cultural characteristics of two single-spore isolates from the leaf lesions indicated that they belonged to the genus Didymella. Molecular phylogenetic analyses using combined sequences of LSU, ITS, TUB2, and RPB2 regions showed distinct clustering of the isolates from other Didymella species. In addition, the morphological and cultural characteristics of the isolates were somewhat different from those of closely related Didymella spp. Therefore, the novelty of the isolates was proved based on the investigations. Pathogenicity of the novel Didymella species isolates was confirmed on leaves of Korean angelica plants via artificial inoculation. This study reveals that Didymella gigantis sp. nov. causes leaf spot in Korean angelica.

Didymella acutilobae sp. nov. Causing Leaf Spot and Stem Rot in Angelica acutiloba

  • Gyo-Bin Lee;Ki Deok Kim;Weon-Dae Cho;Wan-Gyu Kim
    • Mycobiology
    • /
    • v.51 no.5
    • /
    • pp.313-319
    • /
    • 2023
  • During disease surveys of Angelica acutiloba plants in Korea, leaf spot symptoms were observed in a field in Andong in July 2019, and stem rot symptoms in vinyl greenhouses in Yangpyeong in April 2020. Incidence of leaf spot and stem rot of the plants ranged from 10 to 20% and 5 to 30%, respectively. Morphological and cultural characteristics of fungal isolates from the leaf spot and stem rot symptoms fitted into those of the genus Phoma. Molecular phylogenetic analyses of two single-spore isolates from the symptoms using concatenated sequences of LSU, ITS, TUB2, and RPB2 genes authenticated an independent cluster from other Didymella (anamorph: Phoma) species. Moreover, the isolates showed different morphological and cultural characteristics in comparison to closely related Didymella species. These discoveries confirmed the novelty of the isolates. Pathogenicity of the novel Didymella species isolates was substantiated on leaves and stems of A. acutiloba through artificial inoculation. Thus, this study reveals that Didymella acutilobae sp. nov. causes leaf spot and stem rot in Angelica acutiloba.

Taxonomical Studies of Three Unrecorded Entoloma Species in Korea

  • Cho, Sung Eun;Jo, Jong Won;Kwag, Young-Nam;Han, Jae-Gu;Han, Sang-Kuk;Oh, Seung Hwan;Kim, Chang Sun
    • The Korean Journal of Mycology
    • /
    • v.47 no.4
    • /
    • pp.281-289
    • /
    • 2019
  • Since 2013, more than 100 Entoloma (Entolomataceae, Agaricales) collections have been made during field investigations of mushroom flora in Korea. Among these collections, three Entoloma species were identified as new records from Korea. Morphological examinations were made based on the macro- and micro-morphological features of the isolates collected during field visits. To ensure the identity of the isolates at the species level, DNA sequences from four gene regions (rpb2, ITS, 28S, and mtSSU) were compared. To the best of our knowledge, these are the first records of E. aprile, E. chytrophilum, and E. hirtipes in Korea. Comprehensive descriptions, photographs, and phylogenetic examinations are presented here.

First Report of Leaf Spot of Datura metel Caused by Alternaria tenuissima in Korea

  • Aktaruzzaman, Md.;Kim, Joon-Young;Afroz, Tania;Kim, Byung-Sup
    • Research in Plant Disease
    • /
    • v.21 no.4
    • /
    • pp.330-333
    • /
    • 2015
  • In June 2013, we collected leaf spot disease samples of Datura metel from Gangneung, Gangwon Province, Korea. The symptoms observed were small circular to oval dark brown spots with irregular in shape or remained circular with concentric rings. We isolated the pathogen from infected leaves and cultured the fungus on potato dextrose agar. We examined the fungus morphologically and confirmed its pathogenicity according to Koch's postulates. The results of morphological examinations, pathogenicity tests, and the rDNA sequences of the internal transcribed spacer regions (ITS1 and ITS4), glycerol-3-phosphate dehydrogenase (G3PDH) and the RNA polymerase II second largest subunit (RPB2) gene sequence revealed that the causal agent was Alternaria tenuissima. To the best of our knowledge, this is the first report of leaf spot of D. metel caused by A. tenuissima in Korea as well as worldwide.