• Title/Summary/Keyword: RDP3

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STUDIES ON PROTEIN DEGRADABILITIES OF FEEDSTUFFS IN BANGLADESH

  • Khandaker, Z.H.;Tareque, A.M.M.
    • Asian-Australasian Journal of Animal Sciences
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    • v.9 no.6
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    • pp.637-642
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    • 1996
  • This experiment was conducted to determine RDP values of locally available feedstuffs that are commonly used in ruminant rations in Bangladesh. Four cattle were fistulated in the rumen for the in situ nylon bag studies. Seventeen different feedstuff sample (9 roughages and 8 concentrates) were evaluated in $4{\times}14cm$ nylon bags and incubated in the rumen for different periods of time (2, 6, 12, 24, 48 and 72 h). The variation in crude protein (CP) contents reflected on the average CP disappearance value throughout the rumen incubation. Soluble fraction (a), insoluble but degradable fraction (b) along with the rate of degradation also varied widely among the various feedstuffs. Under 2% of rumen outflow rate, the percentages of the calculated protein degradabilities of roughages were rice straw, 16.7; maize grass, 70.6; oat grass, 70.8; dhal grass, 71.1; sunhemp, 78.4; napier grass, 62.4; matikalai grass, 72.1; khesarikalai grass, 76.9 and daincha browse, 78.4, respectively. The results in the protein degradabilities (%) in 8% ruminal outflow rate of concentrates were wheat bran, 61.6; rice polish (red), 61.3; rice polish (auto), 30.9; mustard oil cake, 71.8; sesame oil cake, 74.2; coconut oil cake, 57.9; soybean meal, 49.2 and fish meal, 37.9, respectively.

Isolation and Characterization of Bacteriolytic Wild Myxobacteria (용균성 야생 점액세균의 분리)

  • 박수연;이봉수;김지훈;이차율;장은혜;조경연
    • Microbiology and Biotechnology Letters
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    • v.32 no.3
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    • pp.218-223
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    • 2004
  • Myxobacteria are Gram-negative soil bacteria known to be a rich source of potentially useful secondary metabolites. We have isolated 204 strains of bacteriolytic myxobacteria from soil samples collected in Korea and determined their 16S rRNA sequences. Sequence analysis of the partially determined 16S rRNA sequences has suggested that 132 isolates (65% of total isolates) belong to the genus Myxococcus and 59 isolates (29% of total isolates) belong to the genus Corallococcus. Meanwhile, 4 isolates appear to be Archangium spp. and the other 4 isolates appear to be Stigmatella spp. Genera of the remained 5 isolates have not been identified because their 16S rRNA sequences are distantly related to those of known myxobacteria.

Microbial Community Analysis using RDP II (Ribosomal Database Project II):Methods, Tools and New Advances

  • Cardenas, Erick;Cole, James R.;Tiedje, James M.;Park, Joon-Hong
    • Environmental Engineering Research
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    • v.14 no.1
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    • pp.3-9
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    • 2009
  • Microorganisms play an important role in the geochemical cycles, industry, environmental cleanup, and biotechnology among other fields. Given the high microbial diversity, identification of the microorganism is essential in understanding and managing the processes. One of the most popular and powerful method for microbial identification is comparative 16S rRNA gene analysis. Due to the highly conserved nature of this essential gene, sequencing and later comparison of it against known rRNA databases can provide assignment of the bacteria into the taxonomy, and the identity of its closest relatives. Isolation and sequencing of 16S rRNA genes directly from natural environments (either from DNA or RNA) can also be used to study the structure of the whole microbial community. Nowadays, novel sequencing technologies with massive outputs are giving researchers worldwide the chance to study the microbial world with a depth that was previously too expensive to achieve. In this article we describe commonly used research approaches for the study of individual microorganisms and microbial communities using the tools provided by Ribosomal Database Project website.

Development of IFC Converter Prototype for Applying BIM in the Road Field (도로분야 BIM 적용을 위한 IFC 변환기 프로토타입 시스템 개발)

  • Seo, MyoungBae;Ju, KiBeom
    • Korean Journal of Computational Design and Engineering
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    • v.19 no.4
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    • pp.347-355
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    • 2014
  • IFC converters and viewers, applicable in the construction field, are being actively developed while, in the civil engineering field, IFC schemata are being developed. To prove the IFC schema grammatically, the existing ISO 10303 30s' pre-processors and post-processors may be used. However, to visually prove the IFC model, the existing commercial 3D modeling software should be converted into the IFC schema of civil engineering field, and a viewer is needed to view it. Thus, this study developed a IFC converter and viewer prototype system to apply BIM in the road field. To express the road line, LandXML was analyzed, and IFC suitable for expressing shapes in the road field was designed. Also, an IFC suitable for bridges with focus on representative bridge structures such as abuts, piers and decks was designed. Further, a converter was developed using AutoCAD's Civil3D and Revit's 3rdp party tools, and software was also developed designed to combine each converted IFC model into one IFC. In addition, a viewer designed to view IFC in the road field was developed to prove the converted IFC. Eight major verification and examination items were selected and used in testing the converted model, and it was confirmed that the viewer normally viewed the IFC schema in the road field. The proposed IFC converter is expected to be used as a visual IFC verification tool in the road field.

Effects of Recombination on the Pathogenicity and Evolution of Pepper mottle virus

  • Jonson, Miranda Gilda;Seo, Jang-Kyun;Cho, Hong-Soo;Kim, Jeong-Soo;Kim, Kook-Hyung
    • The Plant Pathology Journal
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    • v.25 no.4
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    • pp.417-421
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    • 2009
  • The analysis of the full length genome of Korean isolates of Pepper mottle virus (PepMoV) in previous study showed molecular variations and are found to be related to symptom variation and pathogenicity (Kim et al., 2009, Virus Res. 144:83-88). To fully understand the molecular variation of PepMoV in Korea, we further assessed the role of RNA recombination to biological variation and evolution of PepMoV. Full-length genome of a total of 17 Korean-PepMoV and 2 American (CA and FL) isolates were examined for possible detection of genetic recombination using different recombination detections programs and detected 5 and 8 tentative recombination events using RDP3 and Splits Tree4 programs, respectively. Interestingly, tentative recombinants detected such as isolates 57, 134 and 217 were previously identified as severe isolates and 205135 and 205136 as differentiating isolates (Kim et al., 2009, Virus Res. 144:83-88). In addition, recombination was frequently detected in the Vb isolate, the first PepMoV isolate reported in Korea, suggesting significant involvement in the evolution of PepMoV in Korea. These initial results of our recombination analyses among PepMoV isolates in Korea may serve as clues to further investigate the biological variations and evolution of PepMoV brought about by recombination.

A STUDY ON THE SATISFIED DEGREE OF ORAL FUNCTION IN GERIATIRIC PATIENTS WITH THE SHORTENED DENTAL ARCH (단치궁 노인의 구강 기능 만족도에 관한 연구)

  • Choi Jae-Sung;Kang Woo-Jin;Chung Moon-Kyu
    • The Journal of Korean Academy of Prosthodontics
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    • v.30 no.2
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    • pp.191-202
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    • 1992
  • The purpose of the present study is to inspect the satisfied degree of each oral function in geriatric patients with the shortened dental arch and when their prosthetic treatment is on schedule, provide some references to such treatment. For the approach to such study, 521 subjects were reviewed by grouping them according to the number of their remaining teeth, and masticatory function, phonetic function, facial change, and TMJ disorders were inspected and clarified through some questionnaires. Also through the questionnaires, the correlations between the geriatiric patients with the shortened dental arch and dentition and between the geriatiric patients with the Free-end RDP at the shortened dental arch and their oral function were found out with their satisfied degree of oral function. Results or findings from such study are as follows : 1. With regard to their satisfied degree of oral function, there was a significant difference of satisfaction between or among the group having only the anterior teeth and the group having the part of premolars and the group having even the part of molars, however no significant difference of satisfaction appeard between the group having 1st molars and the group having 2nd molars. 2. With regard to their satisfied degree of phonetic function, no significant difference appeared between or among the group having only the anterior part of teeth and the group having even the part of premolars and the group having even the part of molars, and with regard to their satisfied degree of facial change, no significant difference of satisfaction appeared between the group having the part of premolars and the group having even the part of molars. 3. With regard to their satisfied degree of masticatory function, phonetic function, TMJ disorders, and facial change, no significant difference appeared between the group having both the anterior part of teeth and the part of premolars and the group attached with the Free-end RPD on the same conditions of the afore-said group.

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The Case Study of Lactobacillus mixture culture fluid on Atopic dermatitis (아토피피부염에 대한 Lactobacillus 혼합배양액의 임상 증례)

  • Jo, Eul-Hwa;Kim, Tae-Keun;Hong, Su-Jung;Jung, Do-Yean;Hwang, Seng-Yean;Ahn, Seong-Hun
    • The Journal of Korean Medicine
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    • v.36 no.3
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    • pp.135-143
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    • 2015
  • Objectives: Recently lactic acid formulation was known as the adjuvant therapy on atopic dermatitis(AD) symptoms because of little side effects. In this study, it was studied that Lactobacillus mixed culture appliment was effective on not on AD symptoms. Methods: The case-photos 30-40 times of AD symptoms from case were observed with literatures. The case-photos were acquired with environmental AD dermatitis experience program which is conducted in SUNCHANG RESERCH INSTITUTE OF HEALTH AND LONGEVITY from 2014.01 to 2014.08. Experience applicants were limited the oral administration and chemical external administration. Results: Lactobacillus mixed culture appliment was effective because of the mitigation or disappearance of AD primary symptoms like pruritus, erythema, edema, effusion, dry skin, scaly, scab etc. AD symptom degree was dependent on lactobacillus mixed culture appliment times, and classified as Reaction Period (RAP), Reduction Period (RDP), Efection Period (EP), Reproduction Period (RPP) on a single mixed culture appliment time. And AD symptoms which were appeared in RPP were classified as Rebound Period (RBP), Effection Period (EP), Subclinical Period (SCP). Conclusions: Lactobacillus mixed culture appliment is considered to be useful for AD symptoms and is estimated to be effective by different mechanism with oral administration or steroid ointment application. Lactobacillus mixed culture appliment is expected to induce a synergistic effects on AD symptom reliefs with the other oral administration.

Genomic Analysis of Dairy Starter Culture Streptococcus thermophilus MTCC 5461

  • Prajapati, Jashbhai B.;Nathani, Neelam M.;Patel, Amrutlal K.;Senan, Suja;Joshi, Chaitanya G.
    • Journal of Microbiology and Biotechnology
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    • v.23 no.4
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    • pp.459-466
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    • 2013
  • The lactic acid bacterium Streptococcus thermophilus is widely used as a starter culture for the production of dairy products. Whole-genome sequencing is expected to utilize the genetic basis behind the metabolic functioning of lactic acid bacterium (LAB), for development of their use in biotechnological and probiotic applications. We sequenced the whole genome of Streptococcus thermophilus MTCC 5461, the strain isolated from a curd source, by 454 GS-FLX titanium and Ion Torrent PGM. We performed comparative genome analysis using the local BLAST and RDP for 16S rDNA comparison and by the RAST server for functional comparison against the published genome sequence of Streptococcus thermophilus CNRZ 1066. The whole genome size of S. thermophilus MTCC 5461 is of 1.73Mb size with a GC content of 39.3%. Streptococcal virulence-related genes are either inactivated or absent in the strain. The genome possesses coding sequences for features important for a probiotic organism such as adhesion, acid tolerance, bacteriocin production, and lactose utilization, which was found to be conserved among the strains MTCC 5461 and CNRZ 1066. Biochemical analysis revealed the utilization of 17 sugars by the bacterium, where the presence of genes encoding enzymes involved in metabolism for 16 of these 17 sugars were confirmed in the genome. This study supports the facts that the strain MTCC 5461 is nonpathogenic and harbors essential features that can be exploited for its probiotic potential.

A Review on R&D and Commercialization of Oil Recovery from Waste Plastics by Pyrolysis (폐합성수지(廢合成樹脂)류의 열분해(熱分解) 유화(油化) 기술(技術) 동향(動向))

  • Shin, Dae-Hyun;Nho, Nam-Sun;Kim, Sung-Soo;Kim, Kwang-Ho;Jeon, Sang-Gu
    • Resources Recycling
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    • v.19 no.1
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    • pp.3-12
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    • 2010
  • Recently, the waste energy utilization has become the main interest in energy industries, due to high oil prices, the low carbon, green growth policy and the RPS (Renewable Portfolio Standards) of our government. Therefore, energy guzzling companies such as district heating companies, textile industries are replacing energy to RDP/RPF. Especially, a lot of big companies are carrying out survey to commercialize the waste plastics pyrolysis technologies developed in Korea. In this paper, status of the pyrolysis technology of Korea were reviewed overall including basis of technology, waste plastics resources, research & development, and commercialization.

Effect of Feeding Graded Levels of Undegraded Dietary Protein on Voluntary Intake, Milk Production and Economic Return in Early Lactating Crossbred Cows

  • Chaturvedi, O.H.;Walli, T.K.
    • Asian-Australasian Journal of Animal Sciences
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    • v.14 no.8
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    • pp.1118-1124
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    • 2001
  • Fifteen lactating crossbred cows were randomly allotted to three groups of 5 each, and fed three isoproteinous concentrate mixture varying in RDP and UDP ratios, viz. 71: 29 (T1) and 58: 42 (T2) and 44: 56 (T3), along with green maize and wheat straw given as 2/3 and 1/3 of total roughage respectively, for a period of 120 days. The DM intake (kg/d) differed significantly (p<0.01) among the treatments as well as among the fortnights over a period of 120 days. DMI (kg/d) progressively increased from first to eighth fortnight in all the treatments. The daily DMI (% BW) was significantly (p<0.01) lower in T1 (2.37) than those of T2 (2.82) and T3 (2.67). The body weights of cows decreased up to 4th fortnight in T1 and up to 3rd fortnight in T2 and T3, then it showed an increasing trend till the end of the experiment in all the treatments. Cows in T1 lost 10 kg body weight but cows in T2 and T3 gained 23 and 12 kg the body weight, respectively. Both the milk and FCM yield differed significantly (p<0.01) among the fortnights. The FCM yield increased up to 2nd fortnight in all the treatments and thereafter, the FCM yield declined gradually as the lactation advanced. The FCM yield (kg/d) was significantly (p<0.05) higher in T3 (10.47) than in T2 (9.81) and T1 (9.68), however, milk yield, SCM yield and milk energy yield did not differ among the treatments as well as among the fortnights. Fat and protein % in milk increased as the lactation advanced. However, fortnightly SNF % in milk showed an irregular trend. The % fat, protein, SNF and total solids in milk differed significantly (p<0.01) among the fortnights. The % fat and protein in milk varied significantly (p<0.01) among the treatments, being lowest in T1 and highest in T3. The feed efficiency for milk production showed a non-significant variation among the treatments as well as among the fortnights, but increased with the increase in UDP level. It is concluded that by increasing the UDP level from 29 to 56 per cent of CP in the diet of medium producing cows, the milk production increases and cost of milk production reduces.