• Title/Summary/Keyword: RAD

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Binding Pattern Elucidation of NNK and NNAL Cigarette Smoke Carcinogens with NER Pathway Enzymes: an Onco-Informatics Study

  • Jamal, Qazi Mohammad Sajid;Dhasmana, Anupam;Lohani, Mohtashim;Firdaus, Sumbul;Ansari, Md Yousuf;Sahoo, Ganesh Chandra;Haque, Shafiul
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.13
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    • pp.5311-5317
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    • 2015
  • Cigarette smoke derivatives like NNK (4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone) and NNAL (4-(methylnitrosamino)-1-(3-pyridyl)-1-butan-1-ol) are well-known carcinogens. We analyzed the interaction of enzymes involved in the NER (nucleotide excision repair) pathway with ligands (NNK and NNAL). Binding was characterized for the enzymes sharing equivalent or better interaction as compared to +Ve control. The highest obtained docking energy between NNK and enzymes RAD23A, CCNH, CDK7, and CETN2 were -7.13 kcal/mol, -7.27 kcal/mol, -8.05 kcal/mol and -7.58 kcal/mol respectively. Similarly the highest obtained docking energy between NNAL and enzymes RAD23A, CCNH, CDK7, and CETN2 were -7.46 kcal/mol, -7.94 kcal/mol, -7.83 kcal/mol and -7.67 kcal/mol respectively. In order to find out the effect of NNK and NNAL on enzymes involved in the NER pathway applying protein-protein interaction and protein-complex (i.e. enzymes docked with NNK/NNAL) interaction analysis. It was found that carcinogens are well capable to reduce the normal functioning of genes like RAD23A (HR23A), CCNH, CDK7 and CETN2. In silico analysis indicated loss of functions of these genes and their corresponding enzymes, which possibly might be a cause for alteration of DNA repair pathways leading to damage buildup and finally contributing to cancer formation.

Proposal and Implementation of 2-D OCDMA System with Reconfigurable Array Encoder/Decoder and Double Hard Limiters (배열형 가변 부호기/복호기와 이중 하드 리미터를 적용한 2-D OCDMA시스템 제안 및 구현)

  • 김진석;김범주;권순영;박종대
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.7A
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    • pp.705-711
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    • 2004
  • We propose novel OCDMA system with the structure of reconfigurable may encoder/decoder(RAE/ RAD), which are able to reallocate the 2-D optical codes to each subscriber and recover the transmitted data at all the receiving nodes. We have first implemented the double hard limiters composed of limiting amplifier(first hard limiter) that maintain a level of the encoded data from receiving node and AND detector(second hard limiter) for detecting the position of the encoded data and recovering the data. With the proposed system, it was successfully implemented to recover a specific channel data out of 16 code-multiplxed channels using FPGA and 4 DFB-LDs having distinct wavelengths. From experimental results, the code length resulted from increasing the number of the simultaneously connected channels has been reduced by using 2-D OCDMA multiplexed in time and wavelength instead of 1-D OCDMA. In addition, bit errors phenomenon on account of deterioration of autocorrelation peak-to-side lobe ratio is enhanced by using the double hard limiters composed of AND detector and limiting amplifiers.

Analyses of Transpiration and Growth of Paprika (Capsicum annuum L.) as Affected by Moisture Content of Growing Medium in Rockwool Culture

  • Tai, Nguyen Huy;Park, Jong Seok;Shin, Jong Hwa;Ahn, Tae In;Son, Jung Eek
    • Horticultural Science & Technology
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    • v.32 no.3
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    • pp.340-345
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    • 2014
  • Since the moisture content (MC) of growing medium closely related with the crop transpiration, the MC should be included to the environmental factors to be considered for irrigation control in soilless culture. The objective of this study was to analyze the transpiration of paprika plants using daily mean solar radiation (RAD) and vapor pressure deficit (VPD) as well as the growth of the plants at different MCs of rockwool growing media. The starting points of irrigation were controlled by a moisture sensor with minimum set points of 40%, 50%, and 60% of MCs. The canopy transpirations were measured for 80 to 120 days after transplanting and analyzed. The transpirations were well regressed with a combination of both RAD and VPD rather than daily mean RAD only under the controlled MCs. The transpiration at 60% MC was higher than those at 50% and 40% MCs. Leaf area, leaf fresh and dry weights at 60% MC were higher than those at 50% and 40% MCs while the number of leaves had no significant difference among the MCs. There were no significant differences in number of fruits and fruit size among all the MCs, while fruit weight was significantly lower at 40% MC than other treatments. Fresh and dry fruit yields were the highest at 60% MC. Therefore it was concluded that the transpiration was affected by the MC of rockwool growing medium and the minimum set point of 50-60% MC of rockwool growing medium gave better effects on the growth of the paprika plants.

AN EXPERIMENTAL STUDY OF THE EFFECT OF CO-60 IRRADIATION ON THE HEALING PROCESS OF EXTRACTION WOUNDS IN WHITE RATS (Co-60조사가 백서 발치창 치유과정에 미치는 영향에 관한 실험적 연구)

  • You Young Jun
    • Journal of Korean Academy of Oral and Maxillofacial Radiology
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    • v.12 no.1
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    • pp.105-113
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    • 1982
  • Because of the development of rampant caries, osteomyelitis and osteoradionecrosis that occur after radiation therapy of oral cancers, extraction of teeth at or near the malignant lesion has been done in the past. Few, however, have studied the radiation effect on the healing of extraction wounds. This study is concerned with the effect of Co-60 irradiation on the healing process of extraction wounds in rats. Fifty six, male, Spraque-Dawley rats are used. The right first molar of the mandible is extracted from all animals. They are divided into three experimental groups of 14 each and a control group of 14. Three experimental groups are irradiated respectively with 200 rad, 400 rad and 600 rad and a pair of rats in each group are killed on days 1, 3, 5, 7, 14, 21 and 28 after irradiation. Two animals from the control group are killed on the day when the experimental rats are killed. The irradiated hemimandibles are fixed in 10% neutral formalin, decalcified in 5% trichloroacetic acid, embedded in paraffin and sectioned. The sections are stained in hematoxylin and eosin, van Gieson, Masson's trichrome or silver nitrate. Results show that in general radiation effects on healing extraction wounds are dose dependent; i.e., the higher is the dose, the greater is the histologic changes observed: 1. Irradiation tends to retard blood clot organization and epithelial regeneration. 2. An increase in the number of giant cells and osteoclasts is noted after irradiation. 3. Formation of regenerating connective tissues around and within the extraction site is com- promised, and a clear reduction of primitive mesenchymal type connective cells is noted. 4. The healing process begins along the lateral aspect of the extraction socket in the control, while irregular histologic appearances of the brabecular pattern is present in the experimental rats.

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Hop2 and Sae3 Are Required for Dmc1-Mediated Double-Strand Break Repair via Homolog Bias during Meiosis

  • Cho, Hong-Rae;Kong, Yoon-Ju;Hong, Soo-Gil;Kim, Keun Pil
    • Molecules and Cells
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    • v.39 no.7
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    • pp.550-556
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    • 2016
  • During meiosis, exchange of DNA segments occurs between paired homologous chromosomes in order to produce recombinant chromosomes, helping to increase genetic diversity within a species. This genetic exchange process is tightly controlled by the eukaryotic RecA homologs Rad51 and Dmc1, which are involved in strand exchange of meiotic recombination, with Rad51 participating specifically in mitotic recombination. Meiotic recombination requires an interaction between homologous chromosomes to repair programmed double-strand breaks (DSBs). In this study, we investigated the budding yeast meiosis-specific proteins Hop2 and Sae3, which function in the Dmc1-dependent pathway. This pathway mediates the homology searching and strand invasion processes. Mek1 kinase participates in switching meiotic recombination from sister bias to homolog bias after DSB formation. In the absence of Hop2 and Sae3, DSBs were produced normally, but showed defects in the DSB-to-single-end invasion transition mediated by Dmc1 and auxiliary factors, and mutant strains failed to complete proper chromosome segregation. However, in the absence of Mek1 kinase activity, Rad51-dependent recombination progressed via sister bias in the $hop2{\Delta}$ or $sae3{\Delta}$ mutants, even in the presence of Dmc1. Thus, Hop2 and Sae3 actively modulate Dmc1-dependent recombination, effectively progressing homolog bias, a process requiring Mek1 kinase activation.

CT/MRI Liver Imaging Reporting and Data System (LI-RADS): Standardization, Evidence, and Future Direction (CT/MRI 간영상 판독과 자료체계: 표준화, 근거 및 발전방향)

  • Yeun-Yoon Kim;Jin-Young Choi
    • Journal of the Korean Society of Radiology
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    • v.84 no.1
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    • pp.15-33
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    • 2023
  • The liver imaging reporting and data system (LI-RADS) has been developed with the support of the American College of Radiology to standardize the diagnosis and evaluation of treatment response of hepatocellular carcinoma (HCC). The CT/MRI LI-RADS version 2018 has been incorporated in the American Association for the Study of Liver Diseases guidance. This review examines the effect of CT/MRI LI-RADS on the standardized reporting of liver imaging, and the evidence in diagnosing HCC and evaluating treatment response after locoregional treatment using CT/MRI LI-RADS. The results are compared with other HCC diagnosis guidelines, and future directions are described.

The Effect of Hyperthermia Combined with Radiation on Crypts of the Mouse Jejunum (마우스공장 소낭선의 방사선 효과에 온열요법의 병용이 미치는 영향에 관한 실험적 연구)

  • Bae, Hoon-Sik;Park, Charn-Il;Kim, Jung-Jin
    • Radiation Oncology Journal
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    • v.5 no.1
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    • pp.13-21
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    • 1987
  • The effect of local hyperthermia of 41 to $43^{\circ}C$ for 30 minutes on radiosensitivity of normal tissue was studied utilizing jejunal crypt microcolony assay. Hyperthermia of this range enhanced the radiation effect and the effect was mainly additive without significant effect on the slopes of cell survival curves. At the isoeffect level of 20 microcolony formation, the thermal enhancement ratio was 1.02, 1.10 and 1.39 for $41^{\circ},\;42^{\circ}\;and\;43^{\circ}C$, respectively. The distribution of microcolony formation along the circumference of jejunum was not uniform, having more colonies around the mesenteric border, and this suggests the effect of uneven cooling by blood circulation.

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The Radioprotective Effect of Ginseng Extracts on the liver in Mice that was irradiated by radiation (방사선이 조사된 생쥐 간에서 인삼추출물이 방사선 방어효과에 미치는 영향)

  • Ko, In-Ho;Chang, Chae-Chul;Koh, Jeong-Sam
    • Journal of radiological science and technology
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    • v.27 no.2
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    • pp.35-43
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    • 2004
  • Radioprotective effects of ginseng extracts on liver damage induced by high energy x-ray were studied. To one group of ICR male mice were given white(50 mg/kg/day for 7days, orally) and fermenta ginseng extracts(500 mg/kg/day for 7days, orally) before irrdiation. To another group were irradiated by 5 Gy dose of high energy x-ray. Contrast group were given with saline(0.1 ml). This study also investigated the radioprotective effect between SOD, CAT, hydrogen peroxide and ginseng extracts on hepatic damage. This study measured the level of superoxide dismutase(SOD), catalase(CAT), hydrogen peroxide($H_2O_2$) in liver tissue. Administrating orally white (50 mg/kg/day for 7days, orally) and fermenta ginseng extracts(500 mg/kg/day), the activity of SOD, CAT were generally increased and the hydrogen peroxide($H_2O_2$) was decreased. After irradiation, the activity of SOD, CAT were generally decreased and the hydrogen peroxide($H_2O_2$) was increased. Therefore, ginseng extracts increased antioxidative enzyme activity. And We know that the antioxidatant effect of extracts from white and fermenta ginseng protect radiation damage by direct antioxidant effect involving SOD, CAT. It was included that ginseng can protect against radiation damage through its antioxidatant properties.

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The Protective Effect of Red Ginseng(RG) Extracts on the Liver of Mice by X-ray Irradiation and Medication of Paraquat Orally (방사선 조사 및 Paraquat투여를 한 생쥐 간에 대한 홍삼의 보호 효과)

  • Ko, InHo;Yeo, JinDong
    • Journal of the Korean Society of Radiology
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    • v.8 no.3
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    • pp.137-145
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    • 2014
  • The protective effects of Red Ginseng on liver damage induced by linac X-ray and paraquat were investigated. To one group of ICR male mice were given in Red Ginseng(200mg/kg/day for 7days, orally) before 5Gy(1.01Gy/min) dose of linac X-ray irradiation. To another group were given in Red Ginseng (200mg/kg/day for 7days, orally) before paraquat(30mg/kg/day, orally) was Radiation irradiation group were given with saline(0.1ml) and 5Gy. Contrast group were given with saline(0.1ml). The levels of H2O2, catalase and MDA in liver tissue were measured. In Red Ginseng to paraquat(RG+PQ) group and Red Ginseng(RG+Rad) group than irradiation group(Rad), the catalase level were significantly increased, and the catalase levels were appeared at radiation protection. The Red Ginseng was significantly decreased to MDA and H2O2 level to paraquat(RG+PQ) group and Red Ginseng(RG+Rad) group than irradiation group(Rad). Therefore, Red Ginseng was very excellent protector on radiation and paraquat of liver in mice.

Topographic Phase Correction of MAl (Multiple Aperture SAR Interferometry) Interferogram (MAI (Multiple Aperture SAR Interferometry) 간섭도의 지형위상보정)

  • Jung, Hyung-Sup;Lu, Zhong
    • Korean Journal of Remote Sensing
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    • v.27 no.2
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    • pp.171-180
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    • 2011
  • MAI (multiple aperture SAR interferometry) method has been recently developed to improve the measurement accuracy of along-track surface deformation. By means of split-beam SAR processing, this novel technique produces forward- and backward-looking interferograms, which are combined to generate an MAI interferogram. The along-track surface deformation can then be derived from the MAI interferogram. The achieved accuracy of the along-track surface deformation is approximately 8 cm for interferograms with a coherence of 0.6. It is commonly recognized that the topographic phase on an MAI interferogram can be ignored. However, in this paper, we have generated an MAI interferogram from an ALOS P ALSAR interferometric pair spanning the 2010 Haiti earthquake, and shown that the topographic phase distortion on the MAI interferogram can reach to about $3.45{\times}10^{-4}$ rad./m. This distortion corresponds to an along-track surface deformation of about 98 cm. We have proposed an efficient method to remove the topographic phase distortion. After correcting the distortion, the topographic phase distortion on the MAI interferogram is reduced to about $7.82{\times}10^{-6}$ rad./m. This means that the proposed method can effectively remove the topographic distortion on the MAI interferogram to improve along-track surface deformation measurement.