• Title/Summary/Keyword: R-package

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TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data

  • Lim, Jae Hyun;Lee, Soo Youn;Kim, Ju Han
    • Genomics & Informatics
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    • v.15 no.1
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    • pp.51-53
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    • 2017
  • High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy. Numerous bioconductor packages have been developed for the statistical analysis of RNA-Seq data. However, these tools focus on specific aspects of the data analysis pipeline, and are difficult to appropriately integrate with one another due to their disparate data structures and processing methods. They also lack visualization methods to confirm the integrity of the data and the process. In this paper, we propose an R-based RNA-Seq analysis pipeline called TRAPR, an integrated tool that facilitates the statistical analysis and visualization of RNA-Seq expression data. TRAPR provides various functions for data management, the filtering of low-quality data, normalization, transformation, statistical analysis, data visualization, and result visualization that allow researchers to build customized analysis pipelines.

Educational Utilization of Microsoft Powerpoint for Oral and Maxillofacial Cancer Presentations

  • Carvalho, Francisco Samuel Rodrigues;Chaves, Filipe Nobre;Soares, Eduardo Costa Studart;Pereira, Karuza Maria Alves;Ribeiro, Thyciana Rodrigues;Fonteles, Cristiane Sa Roriz;Costa, Fabio Wildson Gurgel
    • Asian Pacific Journal of Cancer Prevention
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    • v.17 no.4
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    • pp.2337-2339
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    • 2016
  • Electronic presentations have become useful tools for surgeons, other clinicians and patients, facilitating medical and legal support and scientific research. Microsoft(R) PowerPoint is by far and away the most commonly used computer-based presentation package. Setting up surgical clinical cases with PowerPoint makes it easy to register and follow patients for the purpose of discussion of treatment plan or scientific presentations. It facilitates communication between professionals, supervising clinical cases and teaching. It is ofter useful to create a template to standardize the presentation, offered by the software through the slide master. The purpose of this paper was to show a simple and practical method for creating a Microsoft(R) PowerPoint template for use in presentations comcerning oral and maxillofacial cancer.

Prediction of Phase Transformation of Boron Steel Sheet during Hot Press Forming using Material Properties Modeler and DEFORMTM-HT (보론 강판의 핫 프레스 포밍 공정 시 재료 물성 모델러와 DEFORMTM-HT를 활용한 상 변태 예측)

  • Kang, K.P.;Lee, K.H.;Kim, Y.S.;Ji, M.W.;Suh, Y.S.
    • Transactions of Materials Processing
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    • v.17 no.4
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    • pp.249-256
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    • 2008
  • Combined phase transformation and heat transfer was considered on the simulation of hot press forming process, using material properties modeler, $JMatPro^{(R)}$ and a finite element package, $DEFORM^{TM}$-HT. In order to obtain high temperature mechanical properties and flow curves for different phases, a material properties modeler, $JMatPro^{(R)}$ was used, avoiding expensive and extensive high temperature materials tests. The results successfully show that the strength of hot press forming parts may exhibit different strength in the same parts, depending on the contact of blank with tooling. It was also shown effectively that the strength of the parts can be controlled by designing appropriate cooling paths and coolants. This was shown in terms of different heat convection coefficient in the calculation. Overall, current combination of software was shown to be an effective tool for the tool and process design of hot forming process, although the material modeler needs to be additionally verified by an appropriate set of high temperature materials test.

Attitude Determination GPS/INS Integrated Navigation System with FDI Algorithm for a UAV

  • Oh Sang Heon;Hwang Dong-Hwan;Park Chansik;Lee Sang Jeong;Kim Se Hwan
    • Journal of Mechanical Science and Technology
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    • v.19 no.8
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    • pp.1529-1543
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    • 2005
  • Recently an unmanned aerial vehicle (UAV) has been widely used for military and civil applications. The role of a navigation system in the UAV is to provide navigation data to the flight control computer (FCC) for guidance and control. Since performance of the FCC is highly reliant on the navigation data, a fault in the navigation system may lead to a disastrous failure of the whole UAV. Therefore, the navigation system should possess a fault detection and isolation (FDI) algorithm. This paper proposes an attitude determination GPS/INS integrated navigation system with an FDI algorithm for a UAV. Hardware for the proposed navigation system has been developed. The developed hardware comprises a commercial inertial measurement unit (IMU) and the integrated navigation package (INP) which includes an attitude determination GPS (ADGPS) receiver and a navigation computer unit (NCU). The navigation algorithm was implemented in a real-time operating system with a multi-tasking structure. To evaluate performance of the proposed navigation system, a flight test has been performed using a small aircraft. The test results show that the proposed navigation system can give accurate navigation results even in a high dynamic environment.

Calculation of Pressure Rise in the Puffer Cylinder of EHV GCB Without Arc (무부하시의 초고압 GCB의 파퍼실린더 내부의 상승압력 계산)

  • Park, K.Y.;Song, K.D.;Choi, Y.K.;Shin, Y.J.;Song, W.P.;Kang, J.H.
    • Proceedings of the KIEE Conference
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    • 1994.07b
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    • pp.1559-1561
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    • 1994
  • At present, the principle of puffer action in high current interruption is adopted in almost of the EHV(Extra High Voltage) and UHV(Ultra High Voltage) GCB(Gas Circuit Breakers). The thermal interruption capability of these GCBs critically depends on the pressure rise in the puffer cylinder at current zero. The pressure rise in the puffer cylinder depends on the puffer cylinder volume, flow passage and leakage area in the interrupter, stroke curve etc. Recently commercial CFD(Computational Fluid Dynamics ) packages have been widely adopted to calculate the pressure distribution in the interrupter. However, there are still several problems with it, e.g. very expensive price, moving boundary problem, computation time, difficulty in using the package etc. Thus, the calculation of the puffer cylinder pressure in simple and relatively correct method is essential in early stage of GCB design. In these paper, the model ing technique and computed results for EHV class GCB (HICO, 145kV 40kA and 362kV 40kA GCB) are presented and compared with available measured results.

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The influences of organizational conflict and job satisfaction on the turnover intention of dental technicians (치과기공사의 조직 내 갈등 및 직무 만족이 이직 의도에 미치는 영향)

  • Kim, Kyoung-Im
    • Journal of Technologic Dentistry
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    • v.42 no.3
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    • pp.290-297
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    • 2020
  • Purpose: This study aimed at exploring the impacts of organizational conflict and job satisfaction on the turnover intention among dental technicians. Methods: This study utilized a descriptive research design. A structured questionnaire was administered to 159 dental technicians. Of the collected questionnaires, data from 127 valid questionnaires were analyzed using t-tests, analysis of variance, Pearson's correlation coefficient, and hierarchical multiple regression using the IBM SPSS 20.0 statistical package. Results: A positive correlation was identified between organizational conflict and turnover intention (r=0.46, p<0.001); however, a negative correlation was shown between job satisfaction and turnover intention (r=-0.50, p<0.001). A hierarchical multiple-regression model was employed to analyze working hours, unfair treatment from dentists and dental hygienists, organizational conflict, and job satisfaction, which contributed to providing an explanation to 39% of the turnover intention of dental technicians (F=14.16, p<0.001). Furthermore, organizational conflict (β=0.32, p<0.001), job satisfaction (β=-0.31, p=0.003), and working hours (β=0.21, p=0.010) were all shown to affect turnover intention. Conclusion: The impact of the negative consequences of organizational conflict and working hours on the turnover intention should be considered within core strategies for increasing the turnover periods for dental technicians.

Vacuum Packaging Technology of AC-PDP using Direct-Joint Method

  • Lee, Duck-Jung;Lee, Yun-Hi;Moon, Gwon-Jin;Kim, Jun-Dong;Choi, Won-Do;Lee, Sang-Geun;Jang, Jin;Ju, Byeong-Kwon
    • Journal of Information Display
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    • v.2 no.4
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    • pp.34-38
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    • 2001
  • We suggested new PDP packaging technology using the direct joint method, which does not need an exhausting hole and tube. The advantages of this method are simple process, short process time and time panel package. To packaging, we drew the seal line of glass frit by dispenser followed by forming the lump, which provide pumping-out path during the packaging process. And, we have performed a pretreatment of glass frit to reduce the out-gases. After which, both front and rear glass plates were aligned and loaded into vacuum packaging chamber. The 4-inch monochrome AC-PDP was successfully packaged and fully emitted with brightness of 1000 $cd/m^2$. Also, glass frit properties for pretreatment condition was investigated by AES and SEM analyses.

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Prediction of K-league soccer scores using bivariate Poisson distributions (이변량 포아송분포를 이용한 K-리그 골 점수의 예측)

  • Lee, Jang Taek
    • Journal of the Korean Data and Information Science Society
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    • v.25 no.6
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    • pp.1221-1229
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    • 2014
  • In this paper we choose the best model among several bivariate Poisson models on Korean soccer data. The models considered allow for correlation between the number of goals of two competing teams. We use an R package called bivpois for bivariate Poisson regression models and the data of K-league for season 1983-2012. Finally we conclude that the best fitted model supported by the AIC and BIC is the bivariate Poisson model with constant covariance. The zero and diagonal inflated models did not improve the model fit. The model can be used to examine home-away effect, goodness of fit, attack and defense parameters.

RF Characteristics of TO-can Packaged FP-LD Optical Transceiver Module (TO-can 패키지 레이저 다이오드 모듈의 주파수 특성 개선)

  • 이동수
    • Journal of the Korean Institute of Illuminating and Electrical Installation Engineers
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    • v.17 no.4
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    • pp.8-12
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    • 2003
  • Characteristics of optical transceiver module in radio frequency(RF) band were investigated with TO-can packaged Fabry-Perot laser diode(FP-LD). R-L-C parameters for equivalent circuit model of the LD were extracted with an impedance analyzer. With this model, impedance matching to the packaged LD could be performed by eliminating inductive components of the leads in the package by using lumped chip capacitors that have opposite reactance, while it shows resonance dip in low frequency band. The resonance dip could be removed using lumped elements for impedance matching by shifting the resonance frequency to the region out of interest.

Development of Model Interrupter of 7.2kV $SF_6$ Gas Electromagnetic Contactor Using Rotary Arc Principle (7.2kV급 로타리아크식 $SF_6$가스 전자접촉기 소호부 개발연구)

  • Chang, K.C.;Shin, Y.J.;Park, K.P.;Chong, J.K.;Kim, J.K.;Kim, G.S.;Lee, S.H.
    • Proceedings of the KIEE Conference
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    • 1995.07a
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    • pp.30-32
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    • 1995
  • The model interrupters of $SF_6$ gas electromagnetic contactor whose ratings are the voltage of 7.2kV and the short circuit current of 4.0kA have been designed and manufactured on the basis of theoretical and computational analysis for its development. The eddy current analysis, the magnetic field analysis and the calculation of the rotational force on arcs have been conducted using FLUX2D package. The short circuit current interrupting tests have been conducted to the model interrupters using the simplified capacitive synthetic test circuit in KERI. The results show that the model interrupters have a sufficient interrupting capability and the new design concept is proper for a good interrupting performance.

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