• Title/Summary/Keyword: Population Estimation

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Comparative assessment of the effective population size and linkage disequilibrium of Karan Fries cattle revealed viable population dynamics

  • Shivam Bhardwaj;Oshin Togla;Shabahat Mumtaz;Nistha Yadav;Jigyasha Tiwari;Lal Muansangi;Satish Kumar Illa;Yaser Mushtaq Wani;Sabyasachi Mukherjee;Anupama Mukherjee
    • Animal Bioscience
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    • v.37 no.5
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    • pp.795-806
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    • 2024
  • Objective: Karan Fries (KF), a high-producing composite cattle was developed through crossing indicine Tharparkar cows with taurine bulls (Holstein Friesian, Brown Swiss, and Jersey), to increase the milk yield across India. This composite cattle population must maintain sufficient genetic diversity for long-term development and breed improvement in the coming years. The level of linkage disequilibrium (LD) measures the influence of population genetic forces on the genomic structure and provides insights into the evolutionary history of populations, while the decay of LD is important in understanding the limits of genome-wide association studies for a population. Effective population size (Ne) which is genomically based on LD accumulated over the course of previous generations, is a valuable tool for e valuation of the genetic diversity and level of inbreeding. The present study was undertaken to understand KF population dynamics through the estimation of Ne and LD for the long-term sustainability of these breeds. Methods: The present study included 96 KF samples genotyped using Illumina HDBovine array to estimate the effective population and examine the LD pattern. The genotype data were also obtained for other crossbreds (Santa Gertrudis, Brangus, and Beefmaster) and Holstein Friesian cattle for comparison purposes. Results: The average LD between single nucleotide polymorphisms (SNPs) was r2 = 0.13 in the present study. LD decay (r2 = 0.2) was observed at 40 kb inter-marker distance, indicating a panel with 62,765 SNPs was sufficient for genomic breeding value estimation in KF cattle. The pedigree-based Ne of KF was determined to be 78, while the Ne estimates obtained using LD-based methods were 52 (SNeP) and 219 (genetic optimization for Ne estimation), respectively. Conclusion: KF cattle have an Ne exceeding the FAO's minimum recommended level of 50, which was desirable. The study also revealed significant population dynamics of KF cattle and increased our understanding of devising suitable breeding strategies for long-term sustainable development.

A Class of Estimators for Population Variance in Two Occasion Rotation Patterns

  • Singh, G.N.;Priyanka, Priyanka;Prasad, Shakti;Singh, Sarjinder;Kim, Jong-Min
    • Communications for Statistical Applications and Methods
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    • v.20 no.4
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    • pp.247-257
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    • 2013
  • A variety of practical problems can be addressed in the framework of rotation (successive) sampling. The present work presents a sample rotation pattern where sampling units are drawn on two successive occasions. The problem of estimation of population variance on current (second) occasion in two - occasion successive (rotation) sampling has been considered. A class of estimators has been proposed for population variance that includes many estimators as a particular case. Asymptotic properties of the proposed class of estimators are discussed. The proposed class of estimators is compared with the sample variance estimator when there is no matching from the previous occasion. Optimum replacement policy is discussed. Results are supported with the empirical means of comparison.

Bayesian Estimation of k-Population Weibull Distribution Under Ordered Scale Parameters (순서를 갖는 척도모수들의 사전정보 하에 k-모집단 와이블분포의 베이지안 모수추정)

  • 손영숙;김성욱
    • The Korean Journal of Applied Statistics
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    • v.16 no.2
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    • pp.273-282
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    • 2003
  • The problem of estimating the parameters of k-population Weibull distributions is discussed under the prior of ordered scale parameters. Parameters are estimated by the Gibbs sampling method. Since the conditional posterior distribution of the shape parameter in the Gibbs sampler is not log-concave, the shape parameter is generated by the adaptive rejection sampling. Finally, we applied this estimation methodology to the data discussed in Nelson (1970).

Some efficient ratio-type exponential estimators using the Robust regression's Huber M-estimation function

  • Vinay Kumar Yadav;Shakti Prasad
    • Communications for Statistical Applications and Methods
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    • v.31 no.3
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    • pp.291-308
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    • 2024
  • The current article discusses ratio type exponential estimators for estimating the mean of a finite population in sample surveys. The estimators uses robust regression's Huber M-estimation function, and their bias as well as mean squared error expressions are derived. It was campared with Kadilar, Candan, and Cingi (Hacet J Math Stat, 36, 181-188, 2007) estimators. The circumstances under which the suggested estimators perform better than competing estimators are discussed. Five different population datasets with a well recognized outlier have been widely used in numerical and simulation-based research. These thorough studies seek to provide strong proof to back up our claims by carefully assessing and validating the theoretical results reported in our study. The estimators that have been proposed are intended to significantly improve both the efficiency and accuracy of estimating the mean of a finite population. As a result, the results that are obtained from statistical analyses will be more reliable and precise.

Estimation Methods for Population Pharmacokinetic Models using Stochastic Sampling Approach (확률적 표본추출 방법을 이용한 집단 약동학 모형의 추정과 검증에 관한 고찰)

  • Kim, Kwang-Hee;Yoon, Jeong-Hwa;Lee, Eun-Kyung
    • The Korean Journal of Applied Statistics
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    • v.28 no.2
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    • pp.175-188
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    • 2015
  • This study is about estimation methods for the population pharmacokinetic and pharmacodymic model. This is a nonlinear mixed effect model, and it is difficult to find estimates of parameters because of nonlinearity. In this study, we examined theoretical background of various estimation methods provided by NONMEM, which is the most widely used software in the pharmacometrics area. We focused on estimation methods using a stochastic sampling approach - IMP, IMPMAP, SAEM and BAYES. The SAEM method showed the best performance among methods, and IMPMAP and BAYES methods showed slightly less performance than SAEM. The major obstacle to a stochastic sampling approach is the running time to find solution. We propose new approach to find more precise initial values using an ITS method to shorten the running time.

A Validation of Estimating the National Cancer Incidence in Korea using the Databases of 7 Population-based Regional Cancer Registries except Seoul (서울을 제외한 7개 지역암등록본부 자료를 활용한 국가 암통계 추정의 타당성)

  • Bae, Jong-Myeon
    • Journal of Preventive Medicine and Public Health
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    • v.42 no.2
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    • pp.130-134
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    • 2009
  • Objectives : A method of estimation using 8 populationbased cancer registries databases in Korea(KRCR DB) has been introduced as another strategy for validly estimating the national cancer incidence(NCI) in Korea. The purpose of this study was to evaluate the validity of this method with using the 7 KRCR DBs, excluding Seoul covering 21% of the total population of Korea. Methods : We designed the study method(NCSE_7) as same as the estimating method with using 8 KRCR DBs (NCSE_8) in order to ensure maximal comparability. We defined the expected number of cancer cases in each registry as the number of observed cases and then we added the weighted observed cases according to gender, age and the proportion of the population covered by each registry for the population of the seven regions and the population of all areas, with excluding these seven regions. From the expected number of total cancer incidents, the estimated NCI was calculated by dividing the expected number of cancer cases by the number of the total population. The standard error(SE) of the estimated incidence was also taken from the expected number of total cancer incidents. Results : Compared with the results of the NCSE_8, the overall age-standardized rates(ASR) in men and women became over-estimated and under-estimated, respectively. Primary sites that showed statistically significant differences were the colo-rectum, prostate, breast and thyroid. The index of death certificate only(DCO)and microscopically verified(MV)% indicating levels of data quality were decreased, especially for the brain in DCO% and kidney in the MV%. Conclusions : The database of Seoul regional cancer registry has a key role for the method to estimate the valid nationwide cancer statistics in Korea with using the population-based cancer registries databases.

Estimation of Design Population and Design Wastewater Flow Rate for the BTO Project of Wastewater Treatment Facilities (하수종말처리시설 민간투자사업을 위한 계획 인구 및 계획 하수량 추정)

  • Son, Young-Gyu;Lee, So-Young;Kim, Lee-Hyung;Khim, Jee-Hyeong
    • Journal of the Korean Society of Hazard Mitigation
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    • v.8 no.1
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    • pp.145-151
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    • 2008
  • A novel method was suggested for the estimation of design population and design wastewater flow rate in fishing and agrarian village. Even though the population was decreasing continuously in this area, the design population was considered as constant with the passage of the time in conventional methods. And although the portion of groundwater uses was pretty high, the design wastewater flow rate was determined by the supply amount of tap water. Consequently, the design population and the design wastewater flow rate were overestimated. To prevent these overestimates, the design population was predicted to decrease gradually using the population trends from Korea National Statistical Office, and the design wastewater flow rate was determined using the way that the supply amount of tap water was applied in developed areas and the supply amount of groundwater was used in undeveloped areas.

Some Properties of Sequential Point Estimation of the Mean

  • Choi, Ki-Heon
    • Journal of the Korean Data and Information Science Society
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    • v.16 no.3
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    • pp.657-663
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    • 2005
  • Under the minimum risk point estimation formulation of Robbins(1959), we consider the sequential point estimation problem for normal population $N({\theta},\;{\theta})$ with unknown parameter ${\theta}$. In the case of completely unknown ${\theta}$, Stein's(1945) two-stage procedure is known to enjoy the consistency property, but it is not even first-order efficient. In the case when ${\theta}>{\theta}_L\;where\;{\theta}_L(>0)$ is known, the revised two-stage procedure is shown to enjoy all the usual second-order properties.

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Constrained Estimation of the Numbers of Trials in Several Binomial Populations

  • Oh, Myongsik;Lee, Eun-Kyoung
    • Communications for Statistical Applications and Methods
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    • v.7 no.3
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    • pp.699-709
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    • 2000
  • The constrained maximum likelihood estimation of the number of trials in several binomial populations under order restriction, such as simple order, is discussed. The estimation procedure is based on, so called, pool adjacent violators algorithm. Three handy estimators are given and their performances are compared using an artificial example.

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The Characteristics of Population and Family Composition by the Unit Type in Apartment Houses (아파트단지의 단위세대별 인구 및 가족형구성에 관한 분석)

  • Chung Sa-Hee;Choi Seung Hee
    • Journal of the Korean housing association
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    • v.16 no.1
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    • pp.97-104
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    • 2005
  • The purpose of this study is to understand changes of the population and family composition in apartment houses. The main contents of this study is to find the way of housing planning through the analysis of the population and family composition by the unit types. The population and family composition were studied by computer data base program to 11,000 residents of selection 4 apartments houses. The structure of the family types proved to be constant by the result of analyzing the 10 family types. If the family types of certain resident's groups are given, this study will be able to estimate population structure to them. The transition of the population and the family composition changes to the unit types proved to be constant by the time. The distribution of manhood and matured children is tend to change according to how large the size of house is, and to change the structure of family composition.