• 터널과지하공간
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• 제11권2호
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• pp.156-166
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• 2001

균열암반에서의 지하수유동 모사를 위한 추계적 연속테 모델링 기법이 개발되었다. 추계적연속체 모델은 균열수의 제한을 가지는 개별균열연결망 모델의 단점을 극복할 수 있다. 뿐만 아니라 개별균열연결망 모델에서 가능한 확률론적 해석과 전도성이 큰 균열을 통한 지하수 유동을 근접하게 모사할 수 있는 장점을 가진다. 추계적연속체 모델은 개별균열연결망 모델에 근거하여 생성된다. 개별균열연결망 모델은 일정크기의 소블록으로 나누어지며 각 소블록 투수계수의 확률밀도함수와 베리오그램 함수로부터 추계적연속체 모델에서의 투수계수의 공간적 분포를 정의할 수 있다. 이 연구에서 추계적연속체 모델과 개별균열연결망 모델의 적합성을 보여 주기 위하여 수치실험을 통하여 지하수 유동 이동시간을 계산하고 상호 비교하였다. 그리고 추계적연속체 모델은 방사성폐기물 처분장의 확률론적 안전성 펑가를 위해 필요한 지하수 유동속도의 확률분포를 제공할 수 있는 모델임을 제시할 수 있었다.

• Genomics & Informatics
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• 제8권3호
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• pp.150-158
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• 2010

Genome-wise association studies (GWASs) have become popular approaches to identify genetic variants associated with human biological traits. In this study, we applied Structural Equation Models (SEMs) in order to model complex relationships between genetic networks and traits as risk factors. SEMs allow us to achieve a better understanding of biological mechanisms through identifying greater numbers of genes and pathways that are associated with a set of traits and the relationship among them. For efficient SEM analysis for GWASs, we developed a procedure, comprised of four stages. In the first stage, we conducted single-SNP analysis using regression models, where age, sex, and recruited area were included as adjusting covariates. In the second stage, Fisher's combination test was conducted for each gene to detect significant genes using p-values obtained from the single-SNP analysis. In the third stage, Fisher's exact test was adopted to determine which biological pathways were enriched with significant SNPs. Finally, based on a pathway that was associated with the four traits in common, a SEM was fit to model a causal relationship among the genetic factors and traits. We applied our SEM model to GWAS data with four central obesity related traits: suprailiac and subscapular measures for upper body fat, BMI, and hypertension. Study subjects were collected from two Korean cohort regions. After quality control, 327,872 SNPs for 8842 individuals were included in the analysis. After comparing two SEMs, we concluded that suprailiac and subscapular measures may indirectly affect hypertension susceptibility by influencing BMI. In conclusion, our analysis demonstrates that SEMs provide a better understanding of biological mechanisms by identifying greater numbers of genes and pathways.

• 환경생물
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• 제40권2호
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• pp.214-223
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• 2022

멸강나방(Mythimna seperata)과 혹명나방(Cnaphalocrocis medinalis)은 중국 남부 양쯔강 유역에서 봄철 편서풍을 타고 국내로 유입되는 비래 해충(Migratory insect pests)으로 벼를 기주로 삼아 벼 잎을 가해하여 생육을 저해시킨다. 두 나방의 분포를 파악하기 위해서는 서식처의 온습도 뿐만 아니라 주변 환경 요소를 파악하는 것이 중요하다. 본 연구는 두 나방의 분포를 파악하기 위해서 SDM(Species Distribution Model) 중 Machine learning model인 MaxEnt (Maximum Entropy)에 출현 자료, SSPs (Shared Socio-economic Pathways) 시나리오, RCP (Representative Concentration Pathway) 시나리오를 적용하여 현재와 미래의 서식지 적합성 모형을 예측했다. 결과로 시기에 따른 서식처 면적이 큰 차이가 없었으며, SSPs 시나리오가 나빠짐에 따라 분포 면적이 넓어졌다. 두 나방은 중국으로부터 비래 후 생존하기 위한 최적의 장소가 기주가 있는 서해안과 남해안에 집중되어 있다. MaxEnt 결과 토지피복 자료, DEM (Degital Elevation Model) 순으로 기여도가 높게 나타났다. 이는 논에서의 출현 확률 높고 고도가 높아지면서 출현 확률이 낮아졌기 때문이다. 기후 변수에서 멸강나방은 BIO_4 (Temperature seasonality), 혹명나방은 BIO_2 (Mean Diurnal Range)가 높게 나타났다. 멸강나방은 계절에 의한 기온 차가 31.9℃ 이상일 때 서식처가 줄어들고, 혹명나방은 일교차 클수록 서식처가 넓어질 것으로 나타났다. 서식지 적합성 모형에서 두 나방은 대부분의 논에서 서식이 가능할 것이라 예측되었다. 하지만, 두 나방의 출현 위치를 정확하게 예측하는 데 한계가 있으므로, 서식지 적합성 지도를 기초로 조기에 대응하는 것이 중요하다고 판단된다.

• 대한의용생체공학회:의공학회지
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• 제43권1호
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• pp.1-10
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• 2022

Non-alcoholic fatty liver disease(NAFLD) is excessive hepatic lipid accumulation mainly caused by obesity. This study aimed to evaluate whether micro-current stimulation(MCS) could modulate lipid metabolism regarding the Sirt1/AMPK pathway, fatty acid β-oxidation pathway, and lipolysis and lipogenesis-related factors in FL83B cells. For the NAFLD cell model, FL83B cells were treated with oleic acid for lipid accumulation. MCS were stimulated for 1 hr and used frequency 10 Hz, duty cycle 50%, and biphasic rectangular current pulse. The intensity of MCS was divided into 50, 100, 200, and 400 ㎂. Through the results of Oil red O staining, it was confirmed that MCSs with the intensity of 200 ㎂ and 400 ㎂ significantly reduced the degree of lipid droplet formation. Thus, these MCS intensities were applied to western blot analysis. Western blot analysis was performed to analyze the effects of MCS on lipid metabolism. MCS with the intensity of 400 ㎂ showed that significantly activated the Sirt1/AMPK pathway, a key pathway for regulating lipid metabolism in hepatocytes, and fatty acid β-oxidation-related transcription factors. Moreover, it activated the lipolysis pathway and suppressed lipogenesis-related transcription factors such as SREBP-1c, FAS, and PPARγ. In the case of MCS with the intensity of 200 ㎂, only PGC1α and SREBP-1c showed significant differences compared to cells treated only with oleic acid. Taken together, these results suggested that MCS with the intensity of 400 ㎂ could alleviate hepatic lipid accumulation by modulating lipid metabolism in hepatocytes.

• Asian-Australasian Journal of Animal Sciences
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• 제32권2호
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• pp.290-296
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• 2019

Objective: Pigs share many physiological, anatomical and genomic similarities with humans, which make them suitable models for biomedical researches. Understanding the genetic status of Yucatan miniature pigs (YMPs) and their association with human diseases will help to assess their potential as biomedical model animals. This study was performed to identify non-synonymous single nucleotide polymorphisms (nsSNPs) in selective sweep regions of the genome of YMPs and present the genetic nsSNP distributions that are potentially associated with disease occurrence in humans. Methods: nsSNPs in whole genome resequencing data from 12 YMPs were identified and annotated to predict their possible effects on protein function. Sorting intolerant from tolerant (SIFT) and polymorphism phenotyping v2 analyses were used, and gene ontology (GO) network and Kyoto encyclopedia of genes and genomes (KEGG) pathway analyses were performed. Results: The results showed that 8,462 genes, encompassing 72,067 nsSNPs were identified, and 118 nsSNPs in 46 genes were predicted as deleterious. GO network analysis classified 13 genes into 5 GO terms (p<0.05) that were associated with kidney development and metabolic processes. Seven genes encompassing nsSNPs were classified into the term associated with Alzheimer's disease by referencing the genetic association database. The KEGG pathway analysis identified only one significantly enriched pathway (p<0.05), hsa04080: Neuroactive ligand-receptor interaction, among the transcripts. Conclusion: The number of deleterious nsSNPs in YMPs was identified and then these variants-containing genes in YMPs data were adopted as the putative human diseases-related genes. The results revealed that many genes encompassing nsSNPs in YMPs were related to the various human genes which are potentially associated with kidney development and metabolic processes as well as human disease occurrence.

• Bulletin of the Korean Chemical Society
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• 제32권12호
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• pp.4397-4402
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• 2011

The NF-${\kappa}B$ system of transcription factors plays a crucial role in inflammatory diseases, making it an important drug target. We combined quantitative structure activity relationships for predicting the activity of new compounds and quantitative dynamic models for the NF-${\kappa}B$ network with intracellular concentration models. GFA-MLR QSAR analysis was employed to determine the optimal QSAR equation. To validate the predictability of the $IKK{\beta}$ QSAR model for an external set of inhibitors, a set of ordinary differential equations and mass action kinetics were used for modeling the NF-${\kappa}B$ dynamic system. The reaction parameters were obtained from previously reported research. In the IKKb QSAR model, good cross-validated $q^2$ (0.782) and conventional $r^2$ (0.808) values demonstrated the correlation between the descriptors and each of their activities and reliably predicted the $IKK{\beta}$ activities. Using a developed simulation model of the NF-${\kappa}B$ signaling pathway, we demonstrated differences in $I{\kappa}B$ mRNA expression between normal and different inhibitory states. When the inhibition efficiency increased, inhibitor 1 (PS-1145) led to long-term oscillations. The combined computational modeling and NF-${\kappa}B$ dynamic simulations can be used to understand the inhibition mechanisms and thereby result in the design of mechanism-based inhibitors.

• 한방재활의학과학회지
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• 제27권4호
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• pp.111-119
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• 2017

Objectives Clinical pathway (CP), is management plans that display goals for patients and have led to improve outcomes for many diseases. In Korea, Interest in Korean medicine's stabilization (Clinical pathway, Clinical Practice Guideline) is increasing, But the number of studies is scare. Method and Analysis This trials composes nonequivalent control group pretest-posttest design to conduct clincal pathway trial for the acute pain after back surgery. The subjects were 10 control patients with back surgery, and 10 experimental patients with application of integrative CP. Each group patient will observed 6 weeks. We check validation of CP. Also we compared the patient's status using the pain, function, Quality of life index between the two groups. Discussion This trial is the first CP for the acute pain after back surgery using integrative medicine concepts. Aim of this trial is to find the effectiveness and validity of clincal pathway for acute pain after back surgery.

• Advances in nano research
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• 제12권3호
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• pp.301-317
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• 2022

Many studies have shown that Mg-Nd-Zn-Zr (abbreviated as JDBM) alloy has good biocompatibility and biodegradability as well as promotion of cell adhesion, proliferation and differentiation, and Wnt/β-catenin signaling pathway may play a unique role in joint tissue by controlling the function of chondrocytes, osteoblasts and synoviocytes. However, it is not clear whether the JDBM alloy induces osteochondral repair through Wnt/β-catenin signaling pathway. This study aims to verify that JDBM alloy can repair osteochondral defects in rats, which is realized by Wnt/β-catenin signaling pathway. In this study, the osteochondral defect model of the right femoral condyle non-weight-bearing area in rats was established and randomly divided into three groups: Control group, JDBM alloy implantation group and JDBM alloy implantation combined with signaling pathway inhibitor drug ICRT3 injection. It was found that after JDBM alloy implantation, the bone volume fraction (BVF) became larger, the bone trabeculae were increased, the relative expression of osteogenesis gene Runx2, Bmp2, Opn, Ocn and chondrogenesis gene Collagen II, Aggrecan were increased, and the tissue repair was obvious by HE and Masson staining, which could be inhibited by ICRT3.

• 한국수소및신에너지학회논문집
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• 제33권4호
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• pp.400-412
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• 2022

Hydrogen with high chemical reactivity and combustion efficiency, is expected to reduce greenhouse gas and CO emission. However, there is a problem of increase in NOx emission due to hydrogen combustion. MILD combustion technology has been proposed to resolve NOx emission. In this study, the characteristics of MILD combustion and NOx formation by flue gas recirculation (KV) in CH₄-H₂ mixture were analyzed and predicted using 0D premixed combustion model. The ignition delay time became shorter as the hydrogen co-firing rate increased, and longer as the recirculation rate increased. For NOx emission, EINO decreased as the KV increased, but EINO increased as the hydrogen co- firing rate increased. In particular, EINO was predicted to increase significiently above 80% hydrogen. Through the pathway analysis of NO formation, it was found that the influence of N₂O intermediate route and NNH route was enhanced for hydrogen co-firing.

• 가정과삶의질연구
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• 제28권2호
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• pp.111-121
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• 2010

This study examined the variables that influence career maturity in elementary school students and tested a hypothetical structural equation model relating the variables to career maturity. The subjects were 2,771 fourth-grade children(1,494 boys and 1,277 girls) who participated in a Korea Youth Panel Survey(KYPS) in 2004. Data were analyzed through frequency, percentages, Pearson's correlations using SPSS 15.0and structural equation modeling with AMOS7.0. The findings are as follows. The proposed model, as revised, demonstrated the effectiveness of an analysis of the structural equation model, and illustrated that the socio-economic status of parents has only an indirect influence on children's career maturity via relationship with parents, children's self-image or academic work. In addition, relationship with parents, children's self-image, and academic work independently affected children's career maturity both directly and indirectly. Based on the causal relationships among these related variables, the findings reveal that the best pathway towards children's career maturity is in the order of socio-economic status, relationship with parents, children's self-image, and children's academic work.