• Journal of the Institute of Electronics Engineers of Korea SD
• /
• v.45 no.6
• /
• pp.96-103
• /
• 2008

This paper proposes a new low-power and small-area Reed-Solomon decoder. The proposed Reed-Solomon decoder using a novel simplified form of the modified Euclid's algorithm can support low-hardware complexity and low-Power consumption for Reed-Solomon decoding. The simplified modified Euclid's algorithm uses new initial conditions and polynomial computations to reduce hardware complexity, and thus, the implemented architecture consisting of 3r basic cells has the lowest hardware complexity compared with existing modified Euclid's and Berlekamp-Massey architectures. The Reed-Solomon decoder has been synthesized using the $0.18{\mu}m$ Samsung standard cell library and operates at 370MHz and its data rate supports up to 2.9Gbps. For the (255, 239, 8) RS code, the gate counts of the simplified modified Euclid's architecture and the whole decoder excluding FIFO memory are only 20,166 and 40,136, respectively. Therefore, the proposed decoder can reduce the total gate count at least 5% compared with the conventional DCME decoder.

• The Korean Journal of Malacology
• /
• v.20 no.2
• /
• pp.165-169
• /
• 2004

The BLAST server for the mollusk was constructed on the basis of the Intel Server Platform SC-5250 dual Xeon 2.8 GHz cpu and Linux operating system. After establishing the operating system, we installed NCBI (National Center for Biotechnology Information) WebBLAST package after web server configuration for cgi (common gate interface) (http://chimp.kribb.re.kr/mollusks). To build up the stand alone blast, we conducted as follows: First, we downloaded the genome information (mitochondria genome information), DNA sequences, amino acid sequences related with mollusk available at NCBI. Second, it was translated into the multifasta format that was stored as database by using the formatdb program provided by NCBI. Finally, the cgi was used for the Stand Alone Blast server. In addition, we have added the vector, Escherichia coli, and repeat sequences into the server to confirm a potential contamination. Finally, primer3 program is also installed for the users to design the primer. The stand alone BLAST gave us several advantages: (1) we can get only the data that agree with the nucleotide sequence directly related with the mollusks when we are searching BLAST; (2) it will be very convenient to confirm contamination when we made the cDNA or genomic library from mollusks; (3) Compared to the current NSBI, we can quickly get the BLAST results on the mollusks sequence information.

• Journal of Microbiology and Biotechnology
• /
• v.18 no.7
• /
• pp.1290-1297
• /
• 2008

To investigate the diversities of Accumulibacter phosphatis and its polyhydroxyalkanoate (PHA) synthase gene (phaC) in enhanced biological phosphorus removal (EBPR) sludge, an acetate-fed sequencing batch reactor was operated. Analysis of microbial communities using fluorescence in situ hybridization and 16S rRNA gene clone libraries showed that the population of Accumulibacter phosphatis in the EBPR sludge comprised more than 50% of total bacteria, and was clearly divided into two subgroups with about 97.5% sequence identity of the 16S rRNA genes. PAO phaC primers targeting the phaC genes of Accumulibacter phosphatis were designed and applied to retrieve fragments of putative phaC homologs of Accumulibacter phosphatis from EBPR sludge. PAO phaC primers targeting $G_{1PAO},\;G_{2PAO},\;and\;G_{3PAO}$ groups produced PCR amplicons successfully; the resulting sequences of the phaC gene homologs were diverse, and were distantly related to metagenomic phaC sequences of Accumulibacter phosphatis with 75-98% DNA sequence identities. Degenerate NPAO (non-PAO) phaC primers targeting phaC genes of non-Accumulibacter phosphatis bacteria were also designed and applied to the EBPR sludge. Twenty-four phaC homologs retrieved from NPAO phaC primers were different from the phaC gene homologs derived from Accumulibacter phosphatis, which suggests that the PAO phaC primers were specific for the amplification of phaC gene homologs of Accumulibacter phosphatis, and the putative phaC gene homologs by PAO phaC primers were derived from Accumulibacter phosphatis in the EBPR sludge. Among 24 phaC homologs, a phaC homolog (GINPAO-2), which was dominant in the NPAO phaC clone library, showed the strongest signal in slot hybridization and shared approximately 60% nucleotide identity with the $G_{4PAO}$ group of Accumulibacter phosphatis, which suggests that GINPAO-2 might be derived from Accumulibacter phosphatis. In conclusion, analyses of the 16S rRNA and phaC genes showed that Accumulibacter phosphatis might be phylogenetically and metabolically diverse.

• Korean Journal of Microbiology
• /
• v.32 no.4
• /
• pp.264-270
• /
• 1994

A gene coding for a novel putative $\sigma$ factor of RNA polymerase has been identified from Streptomyces coelicolor A3(2) using Escherichia coli rpoS gene fragment as a probe. The 486 bp rpoS gene fragment was amplified from E. coli genomic DNA by PCR with two synthetic oligonucleotides, the sequences of which were deduced from the amino acid sequences in the regions 2.3 and 4.2 conserved among various bacterial factors. When E. coli genomic DNA fragments were hybridized with cloned rpoS probe, only one band corresponding to rpoS gene (3.2 kb PvuII fragment or 2.3 kb KpnI fragment) was detected. In S. coelicolor, however, two bands were detected both in PvuII digested DNA and SalI digested DNA. 3.5 kb PvuII fragment which binds the rpoS gene probe was cloned (pMS1) from the sublibrary, and the nucleotide sequences of 1.0 kb BamH'/HincII subclone (pBH2) was partially determined. The nucleotide sequences revealed extensive similarity to other $\sigma$ factor genes of S. coelicolor (hrdA, hrdB, hrdC, hrdD), S. aureofaciens (hrdA, hrdB, hrdC, hrdD), Synechococcus species, Pseudomonas aeruginosa, Stigmatella aurantiaca, and Anabaena species. The nucleotide sequences in regions 1.2 and 4 were compared with the corresponding regions of 5 known ${\sigma}$ factor genes of S. coelicolor by multiple alignment. It turned out that the cloned gene is most closely related to hrdA showing 88% amino acid similarity in region 1.2 and 75% in region 4.

• Korean Journal of Ecology and Environment
• /
• v.47 no.4
• /
• pp.273-281
• /
• 2014

We conducted the weekly monitoring (December 2012~April 2013) to evaluate the temporal variation and identification of Stephanodiscus spp. that are generally dominant during winter in the Yeongsan River. Phytoplankton species were identified and counted using the optical microscope and scanning electron microscope (SEM). Phytoplankton in the river were grouped into 6 classes (bacillariophyceae, chlorophyceae, cryptophyceae, cyanophyceae, dinophyceae, euglenophyceae), 30 genus and 41 species. Phytoplankton composition showed high abundance of diatoms in winter and Aulacoseira sp., Cyclotella sp. and Stephanodiscus spp. were dominant. Among the species, Stephanodiscus spp. was relatively abundant compared to other diatom species. Stephanodiscus spp. appeared from December 2012 to April 2013 and their abundance peaked in January. Abundance of diatoms especially peaked ($21,080cells\;mL^{-1}$) in January 15, 2013 when Stephanodiscus spp. also bloomed ($20,560cells\;mL^{-1}$). The abundances of Stephanodiscus spp. were gradually decreased from March and reached as low as $60cells\;mL^{-1}$ in April 26. Cyclostephanos (C. invisitatus), Cyclotella (C. meneghiniana), Discostella (D. pseudostelligera, D. woltereckii) and Stephanodiscus (S. hantzschii, S. minutulus, S. parvus) were classified in the circular diatoms. Abundance of S. hantzschii was extremely high compared to S. minutulus and S. parvus.

• Journal of Information Management
• /
• v.39 no.4
• /
• pp.215-240
• /
• 2008

This paper presents a scientometric analysis of national patterns of research output and priorities in the sub-fields of Hepatitis covered in three bibliographic databases namely MEDLINE, CINAHL and IPA. The literature covered in three databases for the period 1984-2003 was considered. We have already discussed the Trends in the Growth of Literature on Hepatitis in our previous paper. Therefore in this paper only sub-fields analysis is presented. It has been found that the Hepatitis literature output has been grouped in 23 major sub-fields based on databases covered. It was found that there were high priorities for some of the sub-fields of Hepatitis research during 1984-1993. It was found that the research priority profile was more or less homogenous since majority of the sub-fields are showing either below or above average levels of priority profile. In the first phase of the research period covering from 1984-1993, there are high priorities in 10 sub-fields in USA followed by 9 in UK and 8 in Germany, 7 each in Canada, Russia and Netherlands. On the other hand, in the second phase (1994-2003) there are high priorities for 10 sub-fields in Germany, 9 in UK, 8 in USA, 7 each in Canada, Russia and Netherlands. In the productivity of Pediatrics sub-field, India is in the third position.

• Proceedings of the Korean Institute of Information and Commucation Sciences Conference
• /
• 2009.05a
• /
• pp.253-256
• /
• 2009

This paper describes a core generator (FFT_Core_Gen) which generates Verilog HDL models of 8 different FFT/IFFT cores with $N=64{\times}2^k$($0{\leq}k{\leq}7$ for OFDM-based communication systems. The generated FFT/IFFT cores are based on in-place single memory architecture, and use a hybrid structure of radix-4 and radix-2 DIF algorithm to accommodate various FFT lengths. To achieve both memory reduction and the improved SQNR, a conditional scaling technique is adopted, which conditionally scales the intermediate results of each computational stage, and the internal data and twiddle factor has 14 bits. The generated FFT/IFFT cores have the SQNR of 58-dB for N=8,192 and 63-dB for N=64. The cores synthesized with a $0.35-{\mu}m$ CMOS standard cell library can operate with 75-MHz@3.3-V, and a 8,192-point FFT can be computed in $762.7-{\mu}s$, thus the cores satisfy the specifications of wireless LAN, DMB, and DVB systems.

• Proceedings of the Korean Institute of Information and Commucation Sciences Conference
• /
• 2015.10a
• /
• pp.875-878
• /
• 2015

In this paper, we propose an intra prediction hardware architecture with less processing time, computations and reduced hardware area for a high performance HEVC encoder. The proposed intra prediction hardware architecture uses common operation units to reduce computational complexity and uses $4{\times}4$ block unit to reduce hardware area. In order to reduce operation time, common operation unit uses one operation unit to generate predicted pixels and filtered pixels in all prediction modes. Intra prediction hardware architecture introduces the $4{\times}4$ PU design processing to reduce the hardware area and uses intemal registers to support $32{\times}32$ PU processmg. The proposed hardware architecture uses ten common operation units which can reduce execution cycles of intra prediction. The proposed Intra prediction hardware architecture is designed using Verilog HDL(Hardware Description Language), and has a total of 41.5k gates in TSMC $0.13{\mu}m$ CMOS standard cell library. At 150MHz, it can support 4K UHD video encoding at 30fps in real time, and operates at a maximum of 200MHz.

• The Korean Journal of Malacology
• /
• v.28 no.4
• /
• pp.377-384
• /
• 2012

The importance of biological resources has been gradually increasing, and mollusks have been utilized as main fishery resources in terrestrial ecosystems. But little is known about genomic and transcriptional analysis in mollusks. This is the first report on the transcriptomic profile of Meretrix lusoria. In this study, we constructed cDNA library and determined 542 of distinct EST sequences composed of 284 singletons and 95 contigs. At first, we identified 180 of EST sequences that have significant hits on protein sequences of the exclusive Mollusks database through BLASTX program and 343 of EST sequences that have significant hits on NCBI NR database. We also found that 211 of putative sequences through local BLAST (blastx, E < e-10) search against KOG database were classified into 16 functional categories. Some kinds of immune response related genes encoding allograft inflammatory factor 1 (AIF-1), B-cell translocation gene 1 (BTG1), C-type lectin A, thioester-containing protein and 26S proteasome regulatory complex were identified. To determine phylogenetic relationship, we identified partial sequences of four genes (COX1, COX2, 12S rRNA and NADH dehydrogenase) that significantly matched with the mitochondrial genomes of 3 species-Ml (Meretrix lusoria), Mp (Meretrix petechialis) and Mm (Meretrix meretrix). As a result, we found that there was a little bit of a difference between sequences of Korean isolates and other known isolates. This study will be useful to develop breeding technology and might also be helpful to establish a classification system.

• Journal of the Korean earth science society
• /
• v.42 no.6
• /
• pp.623-631
• /
• 2021

The increased transport of marine hazardous and noxious substances (HNS) has resulted in frequent HNS spill accidents domestically and internationally. There are about 6,000 species of HNS internationally, and most of them have toxic properties. When an accidental HNS spill occurs, it can destroys the marine ecosystem and can damage life and property due to explosion and fire. Constructing a spectral library of HNS according to wavelength and developing a detection algorithm would help prepare for accidents. In this study, a ground HNS spill experiment was conducted in France. The toluene spectrum was determined through hyperspectral sensor measurements. HNS present in the hyperspectral images were detected by applying the spectral mixture algorithm. Preprocessing principal component analysis (PCA) removed noise and performed dimensional compression. The endmember spectra of toluene and seawater were extracted through the N-FINDR technique. By calculating the abundance fraction of toluene and seawater based on the spectrum, the detection accuracy of HNS in all pixels was presented as a probability. The probability was compared with radiance images at a wavelength of 418.15 nm to select abundance fractions with maximum detection accuracy. The accuracy exceeded 99% at a ratio of approximately 42%. Response to marine spills of HNS are presently impeded by the restricted access to the site because of high risk of exposure to toxic compounds. The present experimental and detection results could help estimate the area of contamination with HNS based on hyperspectral remote sensing.