• Journal of the Korean Association of Oral and Maxillofacial Surgeons
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• 제34권2호
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• pp.113-118
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• 2008

Temporomandibular joint disorder (TMD) can induce severe pain but, its pathogenic mechanisms remain poorly understood. In this study, we analyzed proteomes of human synovial fluid in the superior joint space in the patients with TMD, which is obtained during the treatment arthrocentesis. We've got this result that one of the spots was consistently down-regulated in synovial fluid of patients with TMD from analysis of protein pattern. Its molecular weight was estimated to be 33 kDa. Synoviolin was identified in our proteomics analysis of LC/MS/MS. This protein was recently reported as one of the proteins that might affect rheumatoid arthritis (RA). Synoviolin that might be associated with RA was detected in synovial fluid of patients with TMD. We can conclude that synoviolin might be involved not only in the pathogenesis of RA but also in TMD. In result, synoviolin might be involved in the pathogenesis of TMD and can be candidates as new therapeutic targets of TMD or early detection biomarkers.

• Journal of Microbiology and Biotechnology
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• 제18권8호
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• pp.1368-1376
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• 2008

In our previous study, the expression of active H-ferritins in Saccharomyces cerevisiae was found to reduce cell growth and reactive oxygen species (ROS) generation upon exposure to oxidative stress; such expression enhanced that of high-affinity iron transport genes (FET3 and FTR1). The results suggested that the recombinant cells expressing H-ferritins induced cytosolic iron depletion. The present study analyzes metabolic changes under these circumstances via proteomic methods. The YGH2 yeast strain expressing A-ferritin, the YGH2-KG (E62K and H65G) mutant strain, and the YGT control strain were used. Comparative proteomic analysis showed that the synthesis of 34 proteins was at least stimulated in YGH2, whereas the other 37 proteins were repressed. Among these, the 31 major protein spots were analyzed via nano-LC/MS/MS. The increased proteins included major heat-shock proteins and proteins related to endoplasmic reticulum-associated degradation (ERAD). On the other hand, the proteins involved with folate metabolism, purine and methionine biosynthesis, and translation were reduced. In addition, we analyzed the insoluble protein fractions and identified the fragments of Idh1p and Pgk1p, as well as several ribosomal assembly-related proteins. This suggests that intracellular iron depletion induces imperfect translation of proteins. Although the proteins identified above result from changes in iron metabolism (i.e., iron deficiency), definitive evidence for iron-related proteins remains insufficient. Nevertheless, this study is the first to present a molecular model for iron deficiency, and the results may provide valuable information on the regulatory network of iron metabolism.

• Molecules and Cells
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• 제21권3호
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• pp.381-388
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• 2006

Heat shock proteins (Hsp) 70 are a ubiquitous family of molecular chaperones involved in many cellular processes. A yeast strain, ssa1/2, with two functionally redundant cytosolic Hsp70s (SSA1 and SSA2) deleted shows thermotolerance comparable to mildly heatshocked wild type yeast, as well as increased protein synthesis and ubiquitin-proteasome protein degradation. Since mRNA abundance does not always correlate well with protein expression levels it is essential to study proteins directly. We used a gel-based approach to identify stress-responsive proteins in the ssa1/2 mutant and identified 43 differentially expressed spots. These were trypsin-digested and analyzed by nano electrospray ionization liquid chromatography tandem mass spectrometry (nESI-LC-MS/MS). A total of 22 non-redundant proteins were identified, 11 of which were confirmed by N-terminal sequencing. Nine proteins, most of which were up-regulated (2-fold or more) in the ssa1/2 mutant, proved to be stress-inducible proteins such as molecular chaperones and anti-oxidant proteins, or proteins related to carbohydrate metabolism. Interestingly, a translational factor Hyp2p up-regulated in the mutant was also found to be highly phosphorylated. These results indicate that the cytosolic Hsp70s, Ssa1p and Ssa2p, regulate an abundance of proteins mainly involved in stress responses and protein synthesis.

• 한국자원식물학회지
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• 제31권4호
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• pp.342-354
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• 2018

Suaeda japonica is a halophytic plant that lives in mudflat at intertidal zone of western and southern coastal areas of Korea. The seawater-living plants showed a purple color during their whole life. In contrast, freshwater-living plants displayed a green color in leaves. When seawater-living plants were transferred to potting soil, the purple color was gradually changed to green in the leaves. The extracted purple pigment compound exhibited typical characteristics of betacyanin that were represented by water solubility, pH- and temperature-dependent color changes, sensitivity to light, UV-Vis spectra, and gel electrophoretic migration pattern. The LC-MS analysis of the extracted pigment compound showed the presence of two major protonated molecular ions ($[M+H]^+$) at m/z 651.1 and m/z 827.1. Antioxidant activity of the pigment compound was determined using stable free radical DPPH assay. It was found to have an antioxidant activity that is linearly increased in proportion to the reaction time for up to 30 min, and the activity was comparable to that of control BHA at 9.0 mg/ml. The anticancer activity against several tumor cell lines was also examined following the MTT assay. The significant growth inhibitory effect was observed on two tumor cell lines, SW-156 (human kidney carcinoma) and HEC-1B (human endometrial adenocarcinoma). Probably, the pigment compound may function as an osmolyte to uphold halotolerant physiological processes in saline environment.

• Journal of Ginseng Research
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• 제47권2호
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• pp.302-310
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• 2023

Background: The most common type of dementia, Alzheimer's disease (AD), is marked by the formation of extracellular amyloid beta (Aβ) plaques. The impairments of axons and synapses appear in the process of Aβ plaques formation, and this damage could cause neurodegeneration. We previously reported that non-saponin fraction with rich polysaccharide (NFP) from Korean Red Ginseng (KRG) showed neuroprotective effects in AD. However, precise molecular mechanism of the therapeutic effects of NFP from KRG in AD still remains elusive. Methods: To investigate the therapeutic mechanisms of NFP from KRG on AD, we conducted proteomic analysis for frontal cortex from vehicle-treated wild-type, vehicle-treated 5XFAD mice, and NFP-treated 5XFAD mice by using nano-LC-ESI-MS/MS. Metabolic network analysis was additionally performed as the effects of NFP appeared to be associated with metabolism according to the proteome analysis. Results: Starting from 5,470 proteins, 2,636 proteins were selected for hierarchical clustering analysis, and finally 111 proteins were further selected for protein-protein interaction network analysis. A series of these analyses revealed that proteins associated with synapse and mitochondria might be linked to the therapeutic mechanism of NFP. Subsequent metabolic network analysis via genome-scale metabolic models that represent the three mouse groups showed that there were significant changes in metabolic fluxes of mitochondrial carnitine shuttle pathway and mitochondrial beta-oxidation of polyunsaturated fatty acids. Conclusion: Our results suggested that the therapeutic effects of NFP on AD were associated with synaptic- and mitochondrial-related pathways, and they provided targets for further rigorous studies on precise understanding of the molecular mechanism of NFP.

• Journal of Nutrition and Health
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• 제53권3호
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• pp.231-243
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• 2020

소변은 쉽게 채취할 수 있으며 체내의 상태를 파악하기에 좋은 시료라고 할 수 있다. 본 연구에서는 2주간의 한식 섭취 후 변화된 소변 유기산 지표를 찾을 수 있었다. 그 결과 에너지 대사와 관련 있는 대사산물인 succinate, hydroxymethylglutarates 뿐만 아니라 tryptophan 대사물로써 신경전달 물질대사 지표인 5-hydroxyindoleacetate, 비타민 B6, 염증, 면역과도 관련이 있는 kynurenate, 장내세균과 관련 있는 indican이 한식의 섭취를 통해 유의한 차이로 변화하는 것을 확인하여 한식의 효능이 어떤 대사를 통하여 이루어 지는지의 방향 제시를 하였다. 또한 소변 유기산이 한식의 대사에 미치는 영향을 측정하는 생체지표로서의 활용 가능성도 보여주었다. 객관적인 지표로서 확증하기 위해 더욱 큰 표본에서의 연구, 성별, 질병별 다양화한 연구를 통해 관찰된 지표들의 재현성을 확인하여 생체 지표로서의 유효성 검증이 필요하겠다.

• 한국작물학회지
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• 제57권2호
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• pp.171-181
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• 2012

본 연구는 찰쌀보리와 M98의 종실에 함유된 아미노산 조성 및 단백질 profile의 특성 차이를 분석하여 M98의 고-Lysine 및 함몰배유 형질에 관련된 생화학적 정보를 얻고자 수행하였으며, 그 결과를 요약하면 다음과 같다. 1. 찰쌀보리와 M98 종실의 총 16개 아미노산 조성을 분석한 결과, lysine을 비롯하여 총 6개 아미노산의 조성비가 M98에서 찰쌀보리에 비해 1.2~1.8배 높았다. Proline과 그것의 전구물질인 glutamic acid의 조성비는 M98에서 찰쌀보리에 비해 절반수준으로 낮았는데, glutamic acid를 전구물질로 하여 합성되는 arginine의 조성비는 M98에서 찰쌀보리보다 1.8배 높았다. 2. 찰쌀보리와 M98간의 종실 단백질을 이차원전기영동으로 분리한 결과, 총 70개 단백질 spot에서 발현양상의 차이가 확인되었다. 찰쌀보리에 비해 M98에서 발현양이 높은 단백질 spot은 44개였으며, 발현양이 낮은 단백질 spot은 18개였다. 나머지 8개 단백질 spot에서 7개의 발현은 찰쌀보리에서만 확인되었고, 1개의 발현은 M98에서만 확인되었다. 3. 찰쌀보리와 M98의 종실에서 발현양상 차이를 나타낸 총 53개의 단백질 spot을 선택하여 nESI-LC-MS/MS 방식으로 동정하였으며, 대부분의 단백질 spot은 종실의 다양한 생물학적 과정에 관여하는 단백질이었다. 특히, 28개 단백질 spot은 M98의 함몰배유 및 고-Lysine 형질과 연관된 단백질이었다. 4. 본 연구에서 밝혀진 M98 종실의 아미노산 조성 및 단백질 발현특성 정보는 향후 M98 유래 계통을 이용한 유전학적 검토 등을 통하여 고-Lysine 형질 연관 바이오마커 및 보리 신품종 개발에 유용한 정보로 활용될 수 있을 것으로 판단되었다.