• 제목/요약/키워드: Metabolic Enzymes

검색결과 372건 처리시간 0.029초

Dynamic Gene Expression Profiling of Escherichia coli in Carbon Source Transition from Glucose to Acetate

  • Oh Min-Kyu;Cha Mee-Jeong;Lee Sun-Gu;Rohlin Lars;Liao James C.
    • Journal of Microbiology and Biotechnology
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    • 제16권4호
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    • pp.543-549
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    • 2006
  • DNA microarray was used to study the transcription profiling of Escherichia coli adapting to acetate as a sole carbon source. Bacteria grown in glucose minimal media were used as a reference. The dynamic expression levels of 3,497 genes were monitored at seven time points during this adaptation. Among the central metabolic genes, the glycolytic and glucose phosphotransferase genes were repressed as the bacteria entered stationary phase, whereas the glyoxylate pathway, TCA cycle, and gluconeogenic genes were induced. Distinct induction or repression patterns were recognized among different pathway genes. For example, the repression of glycolytic genes and the induction of gluconeogenic ones started immediately after glucose was depleted. On the other hand, the regulation of the pentose phosphate pathway genes and glyoxylate genes gradually responded to the glucose depletion or was more related to growth in acetate. When the whole genome was considered, many of the CRP, FadR, and Cra regulons were immediately responsive to the glucose depletion, whereas the $\sigma^s$, Lrp, and IHF regulons were gradually responsive to the glucose depletion. The expression profiling also provided differential regulations between isoenzymes; for example, malic enzymes A (sfcA) and B (maeB). The expression profiles of three genes were confirmed with RT-PCR.

Mechanisms of Amyloid-β Peptide Clearance: Potential Therapeutic Targets for Alzheimer's Disease

  • Yoon, Sang-Sun;AhnJo, Sang-Mee
    • Biomolecules & Therapeutics
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    • 제20권3호
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    • pp.245-255
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    • 2012
  • Amyloid-${\beta}$ peptide ($A{\beta}$) is still best known as a molecule to cause Alzheimer's disease (AD) through accumulation and deposition within the frontal cortex and hippocampus in the brain. Thus, strategies on developing AD drugs have been focused on the reduction of $A{\beta}$ in the brain. Since accumulation of $A{\beta}$ depends on the rate of its synthesis and clearance, the metabolic pathway of $A{\beta}$ in the brain and the whole body should be carefully explored for AD research. Although the synthetic pathway of $A{\beta}$ is equally important, we summarize primarily the clearance pathway in this paper because the former has been extensively reviewed in previous studies. The clearance of $A{\beta}$ from the brain is accomplished by several mechanisms which include non-enzymatic and enzymatic pathways. Nonenzymatic pathway includes interstitial fluid drainage, uptake by microglial phagocytosis, and transport across the blood vessel walls into the circulation. Multiple $A{\beta}$-degrading enzymes (ADE) implicated in the clearance process have been identified, which include neprilysin, insulin-degrading enzyme, matrix metalloproteinase-9, glutamate carboxypeptidase II and others. A series of studies on $A{\beta}$ clearance mechanism provide new insight into the pathogenesis of AD at the molecular level and suggest a new target for the development of novel therapeutics.

큰실말에서 분리된 식이섬유가 고지방식이로 유도된 흰쥐의 콜레스테롤에 미치는 영향 (Effects of Cladosiphon Okamuranus Dietary Fiber on Cholesterol in High Fat Diet-Fed Rats)

  • 배귀정;손정현;이재화;정남옥;하배진
    • 한국식품위생안전성학회지
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    • 제29권4호
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    • pp.370-375
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    • 2014
  • Cladosiphon okamuranus is edible brown algae cultured commercially and massively at Okinawa coast. Dietary fiber occupying most of C. okamuranus isn't digested and absorbed by digestive enzymes of human. But it is known to prevent and treat constipation as metabolic disease. This study was to investigate the effects of dietary fiber extracted from C. okamuranus on the damage of liver and the blood cholesterol level in the high fat diet-fed rats. The effects were measured by the levels of aspartate aminotransferase (ALT), alanine aminotransferase (AST), total cholesterol (TC), triglyceride (TG), low density lipoprotein (LDL) and high density lipoprotein (HDL) in sera. The levels of ALT, AST, TC, TG and LDL were significantly reduced in the C. okamuranus-treated group compared with the high fat diet group. But HDL level was markedly increased. The results showed that the dietary fiber extracts from C. okamuranus have the inhibitive effects of cholesterol biosynthesis in the high fat diet-fed rats.

Liposoluble portion of the red alga Pyropia yezoensis protects alcohol induced liver injury in mice

  • Lee, Ji-Hyeok;Ahn, Ginne;Ko, Ju-Young;Kang, Nalae;Jung, Kyungsook;Han, Eui-Jeong;Kim, Gwang-Hoon;Kim, Hee Jeong;Choi, Cheol Soo;Jeon, You-Jin
    • ALGAE
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    • 제36권3호
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    • pp.219-229
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    • 2021
  • The hepatoprotective effect of liposoluble portion of Pyropia yezoensis (PYLP) was investigated against alcohol-induced liver injury in mice. Fatty acids were predominant in PYLP obtained from hexane fraction of 70% EtOH extract after ultrasonication. In particular, polyunsaturated fatty acids such as eicosapentaenoic acid and linoleic acid accounted for 56.91% of the total lipids. PYLP significantly reduced liver damage induced by the alcohol treatment in mice. PYLP treatment increased the activity of antioxidant enzymes including superoxide dismutase, catalase, and glutathion peroxidase by reducing thiobarbituric acid reactive substances. Histological observations showed that PYLP minimizes damage to living tissue induced by alcohol treatment by modulating the expression level of proteins involved in the anti-apoptotic signaling pathway. Our results suggest that PYLP, rich in polyunsaturated fatty acids extracted from the red alga P. yezoensis, will be useful as a potential liver protectant in the hangover industry.

Oral manifestation and root canal therapy of the patient with mucopolysaccharidosis

  • Yoon, Ji-Hye;Lee, Hyo-Il;Jang, Ji-Hyun;Choi, Sung-Hyeon;Chang, Hoon-Sang;Hwang, Yun-Chan;Hwang, In-Nam;Lee, Bin-Na;Oh, Won-Mann
    • Restorative Dentistry and Endodontics
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    • 제44권2호
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    • pp.14.1-14.7
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    • 2019
  • Mucopolysaccharidosis (MPS) is an inherited metabolic disorder caused by a deficiency in enzymes that participate in the degradation of glycosaminoglycans (GAGs) such as heparin sulfate and dermatan sulfate. Left untreated, patients show progressive mental and physical deterioration due to deposition of GAGs in organs. Death often occurs due to cardiac or respiratory failure before patients reach their early twenties. MPS has several oral and dental manifestations. An enlarged head, short neck, and open mouth associated with a large tongue are major characteristics of MPS patients. Dental complications can be severe, including unerupted dentition, dentigerous cyst-like follicles, malocclusions, condylar defects, and gingival hyperplasia. A 21-year-old female patient with MPS was described in this article, with special emphasis on oral manifestations and dental treatment.

Phosphate solubilization by phosphate solubilizing microorganisms: insight into the mechanisms

  • Buddhi Charana, Walpola;Kodithuwakku Kankanange Indika Upali, Arunakumara;Min Ho, Yoon
    • 농업과학연구
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    • 제49권3호
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    • pp.463-481
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    • 2022
  • Phosphorous (P) is considered to be one of the key essential elements demanded by crop plants. Approximately 70 - 90% of phosphatic fertilizers applied to crops are fixed in soil as Ca, Fe, and Al metal cations, which are insoluble and thus not readily available for plant uptake. Therefore, most soils are deficient in plant available P. This is usually rectified by applying phosphate fertilizers continuously, although this is not economically viable or environmentally acceptable. The present paper reviews the mechanisms involved with phosphate solubilization and mineralization by phosphate solubilizing microorganisms (PSMs) with the associated factors that determine the success. PSMs are effectively involved in mediating the bioavailability of soil P. Their contribution includes mineralization of organic P solubilization of inorganic P minerals, and storing sizable amounts of P in biomass through different mechanisms such as the production of organic and inorganic acids, H2S, siderophores, exopolysaccharides, and production of enzymes such as phosphatases, phytase, and phosphonatases/C-P lyases, which are capable of chelating the metal ions, forming complexes, and making plant available P. PSMs manifest a wide range of metabolic functions in different environments, resulting in significantly higher plant growth, enhanced soil properties, and increased biological activities. Therefore, development of bio-inoculants with efficient novel PSM strains and further investigations on exploring such strains from diverse ecological niches with multifunctional plant-growth-promoting traits are needed.

갈화가 에탄올을 투여한 흰쥐의 지질과산화와 알코올 대사효소의 활성도에 미치는 영향 (Effects of Flower of Pueraria lobata on Lipid Peroxidation and Activities of Alcohol Metabolic Enzymes in Alcohol-treated Rats)

  • 이정숙;김나영;이경희;김갑순;박희준;최종원;김석화
    • 한국식품영양과학회지
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    • 제29권5호
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    • pp.935-942
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    • 2000
  • 갈화(flower of Pueraria lobata) 분획 및 활성 성분의 급여가 아급성 알코올 중독된 흰쥐에서의 해독에 미치는 영향을 연구할 목적으로, 25% alcohol을 6주간 투여하여 아급성 알코올 중독상태를 유발한 흰쥐를 3주 더 사육하면서 혈액중 지질 함량의 변동, 알코올 대사계 효소의 활성을 비교 검퇀 결과는 다음과 같다. 알코올 단독 급여군은 대조군에 비하여 체중이 감소되었으며, 알코올-갈화 tectorigenin 급여군의 체중증가량은 대조군 수준에는 미치지 못하였으나, 알코올 단독 급여군보다는 유의적인 회복을 나타냈다. 알코올 단독 급여군의 총지방, 중성 지방, 인지질 함량이 대조군에 비하여 중가하엿고, 알코올-갈화 tcctorigcnin 급여군과 알코올-갈화 kaikasapomin III 급여군의 총지방, 주성지방 함량은 대조군 수준에는 미치지 못하였으나, 알코올 단독 급여군에 비하여 유의적으로 회복되었다. 알코올 단독 급여군의 total cholesterol, LDL-cholesterol, VLDL-cholesterol 함량, AI는 대조군에 비하여 증가하였고, 알코올-갈화 tectorigcnin, kaikasaponin III 급여군은 대조군 수준에는 미치지 못했으나, 알코올 단독 급여군에 버해 유의적으로 회복되았다. 알코올 단독 급여군의 HDL-cholcsterol의 함량은 대조군에 비하여 감소하던 것이 알코올-갈화 tectorigenin 급여군과 알코올-갈화 kaikasaponin III 급여군에서는 대조군 수준에서는 미치지 못하나, 알코올 단독 급여군에 비하여 증가하였다. 알코올 급여 시 cytochrome P 450, AH와 AD활성은 대조군에 비하여 증가했으나, 알코올-갈화 tectorigenin 급여군과 알코올-갈화 kaikasaponin III 급여군의 경우 알코올 단독 급여군보다 낮게 나타났다. 알코올 급여시 ADH활성이 증가하였으며 알코올-갈화 tectorigenin 급여군과 알코올-갈화 kaikasponin III 급여군은 알코올 단독 급여군보다 높게 나타났다. MEOS의 활성은 알코올 급여 시 대조군에 비하여 중가를 보였고, 알코올-갈화 tectorigenin 급여군에서는 알코올 단독 급여군보다 유의적인 증가를 나타냈다. Catalase의 활성은 각 군간의 유의적인 차이를 볼 수 없었다. ALDH의 활성은 알코올 단독 급여군은 대조군의 활성에 비하여 감소되었으나, 알코올-갈화 tectorigenin 급여군과 알코올-갈화 kaikasaponin III 급여군에서 알코올 단독 급여군보다 유의적인 활성증가를 보였다. 이상의 결과를 종합해 볼 때 갈화로부터 분리된 tectorigenin과 kaikasaponin III는 아급성 알코올 중독된 흰쥐 간의 free radical 생성계 효소를 억제시켜 알코올로 인한 간손상을 회복시키고, 알코올 대사 효소계에 관여하여 해독작용에 영향을 미침으로써 알코올 해독에 도움을 줄 수 있을 것으로 사료된다.

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Role of Citrate Synthase in Acetate Utilization and Protection from Stress-Induced Apoptosis

  • Lee, Yong-Joo;Kang, Hong-Yong;Maeng, Pil Jae
    • 한국미생물학회:학술대회논문집
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    • 한국미생물학회 2008년도 International Meeting of the Microbiological Society of Korea
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    • pp.39-41
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    • 2008
  • The yeast Saccharomyces cerevisiae has been shown to contain three isoforms of citrate synthase (CS). The mitochondrial CS, Cit1, catalyzes the first reaction of the TCA cycle, i.e., condensation of acetyl-CoA and oxaloacetate to form citrate [1]. The peroxisomal CS, Cit2, participates in the glyoxylate cycle [2]. The third CS is a minor mitochondrial isofunctional enzyme, Cit3, and related to glycerol metabolism. However, the level of its intracellular activity is low and insufficient for metabolic needs of cells [3]. It has been reported that ${\Delta}cit1$ strain is not able to grow with acetate as a sole carbon source on either rich or minimal medium and that it shows a lag in attaining parental growth rates on nonfermentable carbon sources [2, 4, 5]. Cells of ${\Delta}cit2$, on the other hand, have similar growth phenotype as wild-type on various carbon sources. Thus, the biochemical basis of carbon metabolism in the yeast cells with deletion of CIT1 or CIT2 gene has not been clearly addressed yet. In the present study, we focused our efforts on understanding the function of Cit2 in utilizing $C_2$ carbon sources and then found that ${\Delta}cit1$ cells can grow on minimal medium containing $C_2$ carbon sources, such as acetate. We also analyzed that the characteristics of mutant strains defective in each of the genes encoding the enzymes involved in TCA and glyoxylate cycles and membrane carriers for metabolite transport. Our results suggest that citrate produced by peroxisomal CS can be utilized via glyoxylate cycle, and moreover that the glyoxylate cycle by itself functions as a fully competent metabolic pathway for acetate utilization in S. cerevisiae. We also studied the relationship between Cit1 and apoptosis in S. cerevisiae [6]. In multicellular organisms, apoptosis is a highly regulated process of cell death that allows a cell to self-degrade in order for the body to eliminate potentially threatening or undesired cells, and thus is a crucial event for common defense mechanisms and in development [7]. The process of cellular suicide is also present in unicellular organisms such as yeast Saccharomyces cerevisiae [8]. When unicellular organisms are exposed to harsh conditions, apoptosis may serve as a defense mechanism for the preservation of cell populations through the sacrifice of some members of a population to promote the survival of others [9]. Apoptosis in S. cerevisiae shows some typical features of mammalian apoptosis such as flipping of phosphatidylserine, membrane blebbing, chromatin condensation and margination, and DNA cleavage [10]. Yeast cells with ${\Delta}cit1$ deletion showed a temperature-sensitive growth phenotype, and displayed a rapid loss in viability associated with typical apoptotic hallmarks, i.e., ROS accumulation, nuclear fragmentation, DNA breakage, and phosphatidylserine translocation, when exposed to heat stress. Upon long-term cultivation, ${\Delta}cit1$ cells showed increased potentials for both aging-induced apoptosis and adaptive regrowth. Activation of the metacaspase Yca1 was detected during heat- or aging-induced apoptosis in ${\Delta}cit1$ cells, and accordingly, deletion of YCA1 suppressed the apoptotic phenotype caused by ${\Delta}cit1$ mutation. Cells with ${\Delta}cit1$ deletion showed higher tendency toward glutathione (GSH) depletion and subsequent ROS accumulation than the wild-type, which was rescued by exogenous GSH, glutamate, or glutathione disulfide (GSSG). Beside Cit1, other enzymes of TCA cycle and glutamate dehydrogenases (GDHs) were found to be involved in stress-induced apoptosis. Deletion of the genes encoding the TCA cycle enzymes and one of the three GDHs, Gdh3, caused increased sensitivity to heat stress. These results lead us to conclude that GSH deficiency in ${\Delta}cit1$ cells is caused by an insufficient supply of glutamate necessary for biosynthesis of GSH rather than the depletion of reducing power required for reduction of GSSG to GSH.

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Growth, Feed Utilization and Blood Metabolic Responses to Different Amylose-amylopectin Ratio Fed Diets in Tilapia (Oreochromis niloticus)

  • Chen, Meng-Yao;Ye, Ji-Dan;Yang, Wei;Wang, Kun
    • Asian-Australasian Journal of Animal Sciences
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    • 제26권8호
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    • pp.1160-1171
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    • 2013
  • A feeding trial was conducted in tilapia to determine the growth performance, nutrient digestibility, digestive enzymes, and postprandial blood metabolites in response to different dietary amylose-amylopectin ratios. Five isonitrogenous and isolipidic diets containing an equal starch level with different amylose-amylopectin ratios of 0.11 (diet 1), 0.24 (diet 2), 0.47 (diet 3), 0.76 (diet 4) and 0.98 (diet 5) were formulated using high-amylose corn starch (as the amylose source) and waxy rice (as the amylopectin source). Each diet was hand-fed to six tanks of 15 fish each, three times a day over a 6-wk period. After the growth trial, a postprandial blood metabolic test was carried out. Fish fed diet 2 exhibited the highest percent weight gain and feed efficiency and protein efficiency ratio, whereas fish fed with diet 5 showed the lowest growth and feed utilization among treatments. The digestibility for starch in fish fed diet 1 and 2 was higher than those in fish fed with other diets (p<0.05). The highest activities for protease, lipase and amylase were found in fish fed the diet 2, diet 1, and diet 1 respectively among dietary treatments, while the lowest values for these indexes were observed in fish fed the diet 3, diet 5 and diet 4, respectively. The liver glycogen concentrations in fish fed diets 4 and 5 were found higher than in fish fed other diets (p<0.05). The feeding rate, hepatosomatic index, condition factor, and plasma parmeters (glucose, triglyceride, total cholesterol, high-density lipoprotein cholesterol, and low-density lipoprotein cholesterol) did not differ across treatments. In terms of postprandial blood responses, peak blood glucose and triglycerides were lower after 3 or 6 h in the fish fed with diets 3-5 than in the fish fed diet 1, but delayed peak blood total amino acid time was observed in fish fed with the diets 1 or 2. The lowest peak values for each of the three blood metabolites were observed in fish fed diet 5. The results indicate that high-dietary amylose-amylopectin ratio could compromise growth, but help in reducing the blood glucose stress on fish caused by postprandial starch load.

출산 후 경과한 날에 따른 한국인 산모의 모유 단백체 분석 (Proteomic analysis of Korean mothers' human milk at different lactation stages; postpartum 1, 3, and 6 weeks)

  • 박종문;이후근;송승현;한원호;김미정;이주현;강남미
    • 분석과학
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    • 제30권6호
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    • pp.348-354
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    • 2017
  • 이 연구는 출산 후 1, 3, 6주가 경과한 산모에서 얻은 모유의 단백체 발현 양상과 과 발현 단백질을 검출하는 것을 목적으로 하였다. 샷 건 정량 단백체 분석법을 이용하여 모유 중의 단백질을 동정하였고, 각 수유단계 간에 정량적 비교를 하였다. 각 주의 모유 샘플은 두 명의 산모로부터 얻어진 모유를 혼합하였고, 각 샘플 마다 3회 반복 실험을 하였다. Casein은 모유 내에 가장 많이 존재하는 단백질로서 실험의 정확성을 위하여 제거하였고, 트립신을 이용한 절편 화로 모유 단백질들을 펩타이드로 변환하였다. 처리된 펩타이드들은 역상 C18 미세관 크로마토그래피 및 이온-트랩 질량분석기를 이용하여 분석하였으며, Spectra Counting으로 단백질의 정량적 비교를 하였다. 각 샘플 당, 80-109 개의 단백질을 중복 제거한 후 동정하였다. 당화 단백질, metabolic enzyme, 및 lactoferrin, Carboxylic ester hydrolase, Clusterin을 포함하는 chaperon 효소들이 주로 검출되었다. 각 반복실험에서 재현성 있게 검출되는 63개의 단백질에 대한 정량적 비교분석 결과 25개의 단백질이 통계적으로 유의하게 수유단계에 따라 변화하는 것을 확인할 수 있었고, 특히 Ig lambda-7 chain C region과 Tenascin은 시간에 따라 현저하게 감소하였다. 향후 이와 같은 수유 단계에 따른 모유 내 단백의 변화가 생리적으로 가지는 의미에 관하여 추가적인 연구가 필요하다 생각된다.