• 제목/요약/키워드: Mass Science

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Unusual Applications of Kendrick Plots: Recalibration and Tolerance

  • Thierry N. J. Fouquet;Orlando Cabarcos
    • Mass Spectrometry Letters
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    • 제14권4호
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    • pp.173-177
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    • 2023
  • Kendrick plots offer an alternative visualization of mass spectral data which reveals ion series and patterning by turning a mass spectrum into a map, plotting the fractional mass (wrongly called mass defect) as a function of mass-to-charge ratios and ion abundances. Although routinely used for polymer mass spectrometry, two unreported applications of these Kendrick plots are proposed using the program "kendo2": the graphical recalibration of a mass spectrum via the simulation of a theoretical fractional mass and a multi-segment fit; and the rapid evaluation of scan-to-scan variation of accurate mass measurements used as tolerances for the blank subtraction of UPLC-MS data files. Both applications are compatible with any type of high-resolution MS data including LC/GC-MS(/MS).

Properties of Galaxies in Cosmic Filaments around the Virgo Cluster

  • Lee, Youngdae;Kim, Suk;Rey, Soo-Chang;Chung, Jiwon
    • 천문학회보
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    • 제45권1호
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    • pp.64.2-64.2
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    • 2020
  • We present the properties of galaxies in filaments around the Virgo cluster with respect to their vertical distance from the filament spine. Using the NASA-Sloan Atlas and group catalogs, we select galaxies that do not belong to groups in filaments. The filament member galaxies are then defined as those located within 3.5 scale length from the filament spine. The filaments are mainly (~86%) composed of low-mass dwarf galaxies of logh2M∗/M⊙ < 9 dominantly located on the blue cloud in color-magnitude diagrams. We observe that the g - r color and stellar mass of galaxies correlate with their vertical distance from the filament spine in which the color becomes red and stellar mass decreases with increasing vertical filament distance. The galaxies were divided into two subsamples in different stellar mass ranges, with lower-mass (logh2M∗/M⊙ ≤ 8) galaxies showing a clear negative g-r color gradient, whereas higher-mass (logh2M∗/M⊙ > 8) galaxies have a flat distribution against the vertical filament distance. We observe a negative EW(Hα) gradient for higher-mass galaxies, whereas lower-mass galaxies show no distinct variation in EW(Hα) against the vertical filament distance. In contrast, the NUV - r color distribution of higher-mass galaxies shows no strong dependence on the vertical filament distance, whereas the lower-mass galaxies show a distinct negative NUV - r color gradient. We do not witness clear gradients of HI fraction in either the higher- or lower-mass subsamples. We propose that the negative color and stellar mass gradients of galaxies can be explained by mass assembly from past galaxy mergers at different vertical filament distances. In addition, galaxy interactions might be responsible for the contrasting features of EW(Hα) and NUV - r color distributions between the higher- and lower-mass subsamples. The HI fraction distributions of the two subsamples suggest that ram-pressure stripping and gas accretion could be ignorable processes in the Virgo filaments.

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나노물질을 이용한 질량분석 기술 개발동향 (Mass spectrometry based on nanomaterials)

  • 박종민;노주윤;김문주;변재철
    • 세라미스트
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    • 제21권3호
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    • pp.249-269
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    • 2018
  • In conventional MALDI-TOF mass spectrometry, analyte molecules are known to be ionized by mixing with organic matrix molecules. As the organic matrix molecules are made into small fragments, they generate unreproducible mass peaks such that MALDI-TOF mass spectrometry is nearly impossible in the low mass-to-charge (m/z) range (< 1000). Additionally, the dried sample mixed with matrix were made as inhomogeneous crystal on metal plate. When the laser radiation was made on the sample crystal, the amount of generated sample ion was observed to be quite different according to the radiation point. Therefore, the quantitative analysis was very difficult even for the sample spots at the same concentration for the conventional MALDI-TOF mass spectrometry. In this work, we present laser desorption/ionization (LDI) mass spectrometry based on solid-matrices for the quantitative analysis of small molecules in the low m/z range by using MALDI-TOF mass spectrometry: (1) Carbon based nanostructures; (2) Semiconductor based nanomaterials; (3) Metal based nanostructures.

복부흉터에 발생한 자궁내막종 (A Case of Endometrioma at the Abdominal Scar)

  • 이태민;김유진;김선구;이세일
    • Archives of Plastic Surgery
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    • 제37권6호
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    • pp.843-846
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    • 2010
  • Purpose: Plastic surgeon can easily misdiagnose the mass on the postoperative scar as hypertrophic scar. We present a case of endometrioma at abdominal scar after cesarean section. Methods: A 36 year-old female visited with a protruding, rubbery hard mass on her abdominal scar. The mass grew slowly after cesarean section performed 7 years ago. She has felt intermittent pain, not with menstrual cycle, for 2 months. The ultrasonography showed a solid irregular, ill defined mass with heterogenous echogenicity. The MRI finding is suggestive of malignant soft tissue tumor with deep fascial invasion. Incisional biopsy showed acanthosis, melanophage, lymphoplasmacytic infiltration. So we excised mass elliptically, we could see chocolatelike discharge from the mass, adhering to external oblique muscle fascia. The mass confirmed histologically as an endometrioma. Results: The mass was completely removed and did not recurr. The patient does not complain more about pain or any discomfort. Conclusion: Plastic surgeons should be aware of the possibility of endometrioma when the patient present with mass on her abdominal scar after surgery of the pelvis and abdomen.

A Multidimensional System for Phosphopeptide Analysis Using TiO2 Enrichment and Ion-exchange Chromatography with Mass Spectrometry

  • Cho, Kun;Yoo, Ji-Sun;Kim, Eun-Min;Kim, Jin-Young;Kim, Young-Hwan;Oh, Han-Bin;Yoo, Jong-Shin
    • Bulletin of the Korean Chemical Society
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    • 제33권10호
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    • pp.3298-3302
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    • 2012
  • Although offline enrichment of phosphorylated peptides is widely used, enrichment for phosphopeptides using $TiO_2$ is often performed manually, which is labor-intensive and can lead to irreproducible results. To address the problems associated with offline enrichment and to improve the effectiveness of phosphopeptide detection, we developed an automated online enrichment system for phosphopeptide analysis. A standard protein mixture comprising BSA, fetuin, crystalline, ${\alpha}$-casein and ${\beta}$-casein, and ovalbumin was assessed using our new system. Our multidimensional system has four main parts: a sample pump, a 20-mm $TiO_2$-based column, a weak anion-exchange, and a strong cation-exchange (2:1 WAX:SCX) separation column with LC/MS. Phosphorylated peptides were successfully detected using the $TiO_2$-based online system with little interference from nonphosphorylated peptides. Our results confirmed that our online enrichment system is a simple and efficient method for detecting phosphorylated peptides.

Extramedullary Plasmacytoma on Unilateral Upper Eyelid in a Shih-Tzu Dog

  • Junyeong Ahn;Jeong-Seop Oh;Hyelin Kim;Nayoung Lee;Kangmoon Seo;Seonmi Kang
    • 한국임상수의학회지
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    • 제40권2호
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    • pp.158-163
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    • 2023
  • A 9-year-old spayed female Shih-Tzu was presented with a mass on the upper eyelid of the right eye (OD). The eyelid mass continued to enlarge along the eyelid margin and the eyelid skin. Throughout the follow-up examinations, the mass did not affect the palpebral conjunctiva OD. Until 9 months since the mass was first identified, the dog did not show any clinical signs related to the mass. However, after 11 months, the owner complained of the dog's discomfort on OD and decided on surgical excision of the mass. There were no abnormalities in the complete blood count and serum chemistry profiles. The pentagonal resection was performed to completely remove the mass in the eyelid. There were no suspicious findings of metastasis on whole-body computed tomography scan immediately before the surgery. On histopathology and immunohistochemistry for multiple myeloma oncogene-1, the eyelid mass was diagnosed as extramedullary plasmacytoma (EMP). Surgical margin of the mass was clearly cut. No recurrence was observed during the 5-month follow-up. EMPs on the eyelid have rarely been reported in dogs. Although EMP is a benign tumor, the mass showed invasive growth and grew toward the skin rather than the palpebral conjunctiva. No recurrence occurred when surgically removed with clean margins.

기체크로마토그래피/질량분석법을 이용한 생체시료 중 Polybrominated Biphenyls의 분석법 (Determination of Polybrominated Biphenyls in Biota Samples Using Gas Chromatography/Mass Spectrometry)

  • 홍종기;백인걸;김협;김도균;서정주;서종복;박현미;이강봉
    • 분석과학
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    • 제13권5호
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    • pp.666-674
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    • 2000
  • 본 연구는 기체크로마토그래피-질량분석법을 이용한 생물시료 중 polybrominated biphenyls(PBBs)의 분석법을 설명하였다. 생물 시료 중 PBB류는 40mL 아세톤과 80mL의 헥산 혼합용매에서 초음파추출기 20분간 교반하여 추출하였다. 추출액 중 존재하는 지질성분은 농축 황산용액으로 분해한 후 PBB류는 Florisil 컬럼으로 정제하였다. PBB류를 정량분석하기 위하여 정제액은 GC/MS-selected ion monitoring 방법에 의해 분석하였다. 본 실험 조건하에서 전반적인 PBB류의 추출율은 77-111%로 나타났다.

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기체 크로마토그래피/질량분석기를 이용한 생물시료 중 알킬 페놀류, 클로로페놀류 및 비스페놀 A의 분석법 (Analytical Determination of Alkylphenols, Chlorophenols and Bisphenol A in Biota Samples using Gas Chromatography/Mass Spectrometry)

  • 홍종기;김협;백인걸;김도균;서정주;서종복;정봉철;표희수;김경례;김용화
    • 분석과학
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    • 제13권4호
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    • pp.484-493
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    • 2000
  • 생물시료 중 존재하는 알킬페놀류, 클로로페놀류 및 비스페놀 A의 동시분석을 기체크로마토그래피-질량분석기-선택이온검색법에 의해 수행하였다. 시료 중 페놀류는 유기용매로 추출하고 정제과정은 Florisil과 silica 컬럼을 비교분석하였다. 회수율 실험은 각 생물시료에 1-ppm 정도를 첨가하여 수행하였다. 이들의 회수율은 83-116% 정도로 나타났고, 표준편차는 약 2.4-11.9%로 나타났다. 페놀류의 검출한계를 증진시키기 위하여, trimeaylsilyl(TMS) 유도체 방법을 도입하였다. 유도체화 시키지 않은 페놀과 TMS 유도체화된 페놀류의 기체크로마토그래피 성질을 연구하였다.

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Applications of Stochastic Process in the Quadrupole Ion traps

  • Chaharborj, Sarkhosh Seddighi;Kiai, Seyyed Mahmod Sadat;Arifina, Norihan Md;Gheisari, Yousof
    • Mass Spectrometry Letters
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    • 제6권4호
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    • pp.91-98
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    • 2015
  • The Brownian motion or Wiener process, as the physical model of the stochastic procedure, is observed as an indexed collection random variables. Stochastic procedure are quite influential on the confinement potential fluctuation in the quadrupole ion trap (QIT). Such effect is investigated for a high fractional mass resolution Δm/m spectrometry. A stochastic procedure like the Wiener or Brownian processes are potentially used in quadrupole ion traps (QIT). Issue examined are the stability diagrams for noise coefficient, η=0.07;0.14;0.28 as well as ion trajectories in real time for noise coefficient, η=0.14. The simulated results have been obtained with a high precision for the resolution of trapped ions. Furthermore, in the lower mass range, the impulse voltage including the stochastic potential can be considered quite suitable for the quadrupole ion trap with a higher mass resolution.

Superconducting Tunnel Junction Detectors for Mass Spectrometry

  • Ohkubo, M.;Zen, N.;Kitazume, T.;Ukibe, M.;Shiki, S.;Koike, M.
    • Progress in Superconductivity
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    • 제14권2호
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    • pp.77-81
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    • 2012
  • With conventional mass spectrometry (MS), ions are separated according to mass/charge (m/z) ratios. We must speculate the z values to obtain the m values. Superconducting tunnel junction (STJ) detectors can solve this problem, and true mass spectrometry becomes possible instead of m/z spectrometry. The STJ detectors were installed in MS instruments with a variety of ion sources. As an example, we report fragmentation analysis of a non-covalent protein complex of hemoglobin.