Browse > Article
http://dx.doi.org/10.5012/bkcs.2012.33.10.3298

A Multidimensional System for Phosphopeptide Analysis Using TiO2 Enrichment and Ion-exchange Chromatography with Mass Spectrometry  

Cho, Kun (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Yoo, Ji-Sun (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Kim, Eun-Min (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Kim, Jin-Young (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Kim, Young-Hwan (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Oh, Han-Bin (Department of Chemistry, Sogang University)
Yoo, Jong-Shin (Division of Mass Spectrometry Research, Korea Basic Science Institute)
Publication Information
Abstract
Although offline enrichment of phosphorylated peptides is widely used, enrichment for phosphopeptides using $TiO_2$ is often performed manually, which is labor-intensive and can lead to irreproducible results. To address the problems associated with offline enrichment and to improve the effectiveness of phosphopeptide detection, we developed an automated online enrichment system for phosphopeptide analysis. A standard protein mixture comprising BSA, fetuin, crystalline, ${\alpha}$-casein and ${\beta}$-casein, and ovalbumin was assessed using our new system. Our multidimensional system has four main parts: a sample pump, a 20-mm $TiO_2$-based column, a weak anion-exchange, and a strong cation-exchange (2:1 WAX:SCX) separation column with LC/MS. Phosphorylated peptides were successfully detected using the $TiO_2$-based online system with little interference from nonphosphorylated peptides. Our results confirmed that our online enrichment system is a simple and efficient method for detecting phosphorylated peptides.
Keywords
Phosphorylated peptides; $TiO_2$; Online enrichment; Strong cation-exchange; Weak anion-exchange;
Citations & Related Records

Times Cited By Web Of Science : 0  (Related Records In Web of Science)
연도 인용수 순위
  • Reference
1 Liao, P. C.; Huang, Z. H.; Allison, J. Anal. Biochem. 1994, 219, 9.   DOI   ScienceOn
2 Annan, R. S.; Carr, S. A. Anal. Chem. 1996, 68, 3413.   DOI   ScienceOn
3 Nuwaysir, L.; Stults, J. T. J. Am. Soc. Mass Spectrom. 1993, 4, 662.   DOI   ScienceOn
4 Shi, S. D. H.; Hemling, M. E.; Carr, S. A.; Horn, D. M.; Lindh, I.; McLafferty, F. W. Anal. Chem. 2001, 73, 19.   DOI   ScienceOn
5 Stensballe, A.; Jensen, O. N.; Olsen, J. V.; Haselmann, K. F.; Zubarev, R. A. Rapid Commun. Mass Spectrom. 2000, 14, 1793.   DOI
6 Pinkse, M. W.; Mohammed, S.; Gouw, J. W.; van Breukelen, B.; Vos, H. R.; Heck, A. J. J. Proteome. Res. 2008, 7, 687.   DOI   ScienceOn
7 Pinkse, M. W.; Uitto, P. M.; Hilhorst, M. J.; Ooms, B.; Heck, A. J. Anal. Chem. 2004, 76, 3935   DOI   ScienceOn
8 Liang, X.; Fonnum, G.; Hajivandi, M.; Stene, T.; Kjus, N. H.; Ragnhildstveit, E.; Amshey, J. W.; Predki, P.; Pope, R. M. J. Am. Soc. Mass Spectrom. 2007, 18, 1932.   DOI   ScienceOn
9 Hennrich, M. L.; Groenewold, V.; Kops, G. J. P. L.; Heck, A. J. R.; Mohammed, S. Anal. Chem. 2011, 83, 7137.   DOI   ScienceOn
10 Gauci, S.; Helbig, A. O.; Slijper, M.; Krijgsveld, J.; Heck, A. J. R.; Mohammed, S. Anal. Chem. 2009, 81, 4493.   DOI   ScienceOn
11 Motoyama, A.; Xu, T.; Ruse, C. I.; Wohlschlegel, J. A.; Yates, J. R. Anal. Chem. 2007, 79, 3623.   DOI   ScienceOn
12 Oda, Y.; Nagasu, T.; Chait, B. T. Nat. Biotechnol. 2001, 19, 379.   DOI   ScienceOn
13 Trinidad, J. C.; Thalhammer, A.; Specht, C. G.; Schoepfer, R.; Burlingame, A. L. J. Neurochem. 2005, 92, 1306.   DOI   ScienceOn
14 Thompson, A. J.; Hart, S. R.; Franz, C.; Barnouin, K.; Ridley, A.; Cramer, R. Anal. Chem. 2003, 75, 3232.   DOI   ScienceOn
15 Tao, W. A.; Wollscheid, B.; Brien, R. O.; Eng, J. K. Nat. Methods 2005, 2, 591.   DOI   ScienceOn
16 Mclachlin, D. T.; Chait, B. T. Anal. Chem. 2003, 75, 6826.   DOI   ScienceOn
17 Thaler, F.; Valsasna, B.; Baldi, R.; Xie, J. Anal. Bioanal. Chem. 2003, 376, 366.
18 Qian, W. J.; Goshe, M. B.; Camp, D. G.; Yu, L. R.; Tang, K.; Smith, R. D. Anal. Chem. 2003, 75, 5441.   DOI   ScienceOn
19 Pinkse, M. W.; Uitto, P. M.; Hilhorst, M. J.; Ooms, B.; Heck, A. J. Anal. Chem. 2004, 76, 3935.   DOI   ScienceOn
20 Larsen, M. R.; Thingholm, T. E.; Jensen, O. N.; Roepstorff, P.; Jorgensen, T. J. Mol. Cell Proteom. 2005, 4, 873.   DOI   ScienceOn
21 Kweon, H. K.; Hakansson, K. Anal. Chem. 2006, 78, 1743.   DOI   ScienceOn
22 Beausoleil, S. A.; Jedrychowski, M.: Schwartz, D.; Elias, J. E.; Villen, J.; Li, J.; Cohn, M. A.; Cantley, L. C.; Gygi, S. P. Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 12130.   DOI   ScienceOn
23 Lim, K. B.; Kassel, D. B. Anal. Biochem. 2006, 354, 213.   DOI   ScienceOn
24 Chen, C. T.; Chen, Y. C. Anal. Chem. 2005, 77, 5912.   DOI   ScienceOn
25 Neville, D. C.; Rozanas, C. R.; Price, E. M.; Gruis, D. B.; Verkman, A. S.; Townsend, R. R. Protein Sci. 1997, 6, 2436.
26 Zhou, W.; Merrick, B. A.; Khaledi, M. G.; Tomer, K. B. J. Am. Soc. Mass Spectrom. 2000, 11, 273.   DOI   ScienceOn
27 Yip, T. T.; Hutchens, T. W. FEBS Lett. 1992, 308, 149.   DOI   ScienceOn
28 Hunter, T. Cell 1995, 80, 225.   DOI   ScienceOn
29 Mann, M.; Jensen, N. Nat. Biotech. 2003, 21, 255.   DOI   ScienceOn
30 Johnson, S. A.; Hunter, T. Nat. Methods 2005, 2, 17.   DOI   ScienceOn
31 Conrads, T. P.; Issaq, H. J.; Veenstra, T. D. Biochem. Biophys. Res. Commun. 2002, 290, 885.   DOI   ScienceOn
32 Parekh, R. B.; Rohlff, C. Curr. Opin. Biotechnol. 1997, 8, 718.   DOI   ScienceOn
33 Jaffe, H.; Vinade, L.; Dosemeci, A. Biochem. Biophys. Res. Commun. 2004, 321, 210.   DOI   ScienceOn
34 Walsh, C. T.; Garneau-Ysodikova, C.; Gatto, G. J. Angew. Chem. Int. Ed. Engl. 2005, 44, 7342.   DOI   ScienceOn
35 Seet, B. T.; Dikic, I.; Zhou, M. M.; Pawson, T. Nature Reviews 2006, 7, 473.
36 McCarthy, J. E. Microbiol. Mol. Biol. Rev. 1998, 62, 1492.
37 Delom, F.; Chevet, E. Proteome Sci. 2006, 4, 15.   DOI
38 Peng, J.; Kim, M. J.; Cheng, D.; Duong, D. M.; Gygi, S. P.; Sheng, M. J. Biol. Chem. 2004, 279, 21003.   DOI   ScienceOn
39 Venter, J. C.; Adams, M. D.; Myers, E. W.; Li, P. W.; Mural, R. J.; Sutton, G. G.; Smith, H. O.; Yandell, M.; Evans, C. A.; Holt, R. A. Science 2001, 291, 1304.   DOI   ScienceOn