• Title/Summary/Keyword: Korean endemic genus

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Complete mitochondrial genome of Rotunda rotundapex Miyata & Kishida 1990 (Lepidoptera: Bombycidae), which was named as Bombyx shini Park & Sohn 2002

  • Park, Jeong Sun;Kim, Min Jee;Kim, Iksoo
    • International Journal of Industrial Entomology and Biomaterials
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    • v.44 no.2
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    • pp.55-64
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    • 2022
  • Bombyx shini Park & Sohn, 2002 (Lepidoptera: Bombycidae), which was listed as an endemic species in South Korea has recently been renamed as the East Asian silk moth Rotunda rotundapex Miyata & Kishida, 1990 (Lepidoptera: Bombycidae). In this study, we sequenced the complete mitochondrial genome (mitogenome) of the R. rotundapex to announce genomic characteristics and to clarify its validity with a new name. The 15,294-bp long complete mitogenome comprises a typical set of genes [13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes] and one major noncoding, A + T-rich region, with an arrangement identical to that observed in most lepidopteran mitogenomes. The A/T content of the whole mitogenome was 79.22%; however, it varied among the regions/genes as follows: A + T-rich region, 91.62%; srRNA, 84.67%; lrRNA, 83.01%; tRNAs, 81.43%; and PCGs, 77.46%. Phylogenetic analyses of 35 species in the Bombycoidea superfamily showed the sister relationship between the families Sphingidae and Bombycidae s. str., with the higher nodal support [bootstrap support (BS) = 78%]. The Saturniidae was placed as the sister to the two families, but the nodal support for this relationship was low (BS = 53%). Current R. rotundapex was placed together with previously reported con-species with the highest nodal support, forming a separate clade from Bombyx, validating that B. shini can have a new genus name, Rotunda. However, the Korean R. rotundapex showed a substantial sequence divergence at 5.28% to that originated from an individual of type locality Taiwan in 1,459-bp of COI sequences. Considering such a high sequence divergence an additional study, which includes morphological and DNA barcoding data from further extensive distributional range maybe is needed for further robust taxonomic conclusion.

Distribution of Vascular Plants on the Mokdo, Gokdudo, Daehangdo and Bulgeundo Desert Island, Dadohae (다도해 무인도서 중 목도, 곡두도, 대항도, 불근도 관속식물의 분포 현황)

  • Oh, Hyun-Kyung;Beon, Mu-Sup
    • Korean Journal of Plant Resources
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    • v.20 no.1
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    • pp.28-37
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    • 2007
  • The flora of vascular plants of these sites were listed 272 taxa; 80 families, 193 genera, 234 species, 32 varieties, 5 forms and 1 hybrid. The naturalized plants were 12 taxa, and naturalization rate was 4.4%. Specific plants by floral region were total 54 taxa; 4 taxa in class IV, 10 taxa in class III, 5 taxa in class II, 35 taxa in class I. There is no taxa in class V. A peculiar point is that we found more than 30 Allium pseudojaponicum in Allium genus which is known as Japanese endemic plant. In Gokdudo, there is large Carex boottiana community, in Daehangdo, Machilus thunbergii community covers the whole island. In Bulgeundo, most of the hundreds of trees including Neolitsea sericea and Machilus thunbergii planted by Korea National Parks in 2003 have been damaged by rabbits.

Nested-PCR and a New ELISA-Based NovaLisa Test Kit for Malaria Diagnosis in an Endemic Area of Thailand

  • Thongdee, Pimwan;Chaijaroenkul, Wanna;Kuesap, Jiraporn;Na-Bangchang, Kesara
    • Parasites, Hosts and Diseases
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    • v.52 no.4
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    • pp.377-381
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    • 2014
  • Microscopy is considered as the gold standard for malaria diagnosis although its wide application is limited by the requirement of highly experienced microscopists. PCR and serological tests provide efficient diagnostic performance and have been applied for malaria diagnosis and research. The aim of this study was to investigate the diagnostic performance of nested PCR and a recently developed an ELISA-based new rapid diagnosis test (RDT), NovaLisa test kit, for diagnosis of malaria infection, using microscopic method as the gold standard. The performance of nested-PCR as a malaria diagnostic tool is excellent with respect to its high accuracy, sensitivity, specificity, and ability to discriminate Plasmodium species. The sensitivity and specificity of nested-PCR compared with the microscopic method for detection of Plasmodium falciparum, Plasmodium vivax, and P. falciparum/P. vivax mixed infection were 71.4 vs 100%, 100 vs 98.7%, and 100 vs 95.0%, respectively. The sensitivity and specificity of the ELISA-based NovaLisa test kit compared with the microscopic method for detection of Plasmodium genus were 89.0 vs 91.6%, respectively. NovaLisa test kit provided comparable diagnostic performance. Its relatively low cost, simplicity, and rapidity enables large scale field application.

Flora and Ecological Characteristics Before and After Construction of the Binae Marsh, Namhan River (남한강 비내늪의 공사전후 관속식물상과 생태적 특성)

  • You, Ju-Han;Ahn, Young-Sup;Lee, Cheol-Hee
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.15 no.4
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    • pp.61-80
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    • 2012
  • This study is to offer the basic data for restoration and conservation of wetland ecosystem by surveying and analysing the flora distributed in the Binae marsh, Namhan River, Chungju-si. The flora in the Binae marsh were verified 204 taxa including 48 families, 152 genera, 179 species, 23 varieties and 2 forms. In flora, pteridophyta were 2 taxa including 1 family, 1 genus and 2 species, among angiospermae, dicotyledonae were 153 taxa including 37 families, 110 genera, 138 species, 13 varieties and 2 forms and monocotyledonae were 49 taxa including 10 families, 41 genera, 39 species and 10 varieties. In the result of classifying the life form of flora, megaphanerophytes (M), nanophanerophytes (N) and chamaiphytes (Ch) were each 9 taxa (4.4%), 37 taxa (18.1%) of hemicryptophytes (H), 19 taxa (9.3%) of geophytes (G), 97 taxa (47.6%) of therophytes (Th) and 24 taxa (11.8%) of hydrophytes (HH). The rare plant designated by Korea Forest Service was 1 taxa (Aristolochia contorta), and the endemic plant was 1 taxa (Salix koriyanagi) too. The specific plants by floristic region were 6 taxa. From among these, the species of degree I were 5 taxa including Salix chaenomeloides, Aristolochia contorta, Artemisia selengensis, Cirsium pendulum and Vallisneria natans, and degree III was 1 taxa including Alisma orientale. The naturalized plants were 45 taxa and the invasive alien plants were 3 taxa including Sicyos angulatus, Ambrosia artemisiifolia and Ambrosia trifida. The naturalized index (NI) was about 22.1%, 16.1% of urbanized index (UI) and 27.3% of disturbed index (DI). The extinct species by construction were 17 taxa including Persicaria sagittata, Typha orientalis, Zizania latifolia and so forth. The new-occured species were 14 taxa including Brassica juncea, Thlaspi arvense, Carduus crispus and so forth. The important species among the extinct species were Aristolochia contorta, Alisma orientale and Vallisneria natans.

Two Cases of Paragonimiasis in Young Siblings Presenting with Pleural Effusion and Subcutaneous Nodules (흉막삼출과 피부결절로 발현한 초등학생 남매의 폐흡충증 2례)

  • Jeong, Moon Young;Baek, Hee Jo;Cho, Duck;Kim, Jin;Hwang, Chan Kyoo;Han, Dong Kyun;Ma, Jae Sook;Kook, Hoon
    • Clinical and Experimental Pediatrics
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    • v.48 no.12
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    • pp.1385-1388
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    • 2005
  • Paragonimiasis is the infestation of lung flukes of the trematode genus Paragonimus. This disease is common in Asia, and the southern part of Korea has been known as one of the endemic areas of Paragonimiasis westermanii in Korea. Human infection is associated with specific dietary habits, such as eating freshwater crawfish or crabs. In a 6 1/2-year-old boy with pleural effusion and eosinophilia, paragonimiasis was diagnosed by skin test, serologic exam, and histologic identification of the parasites in a skin lesion. The same diagnosis was entertained in his elder sister with silent pleural effusion. We describe herewith these rare cases of paragonimiasis in two siblings who had a history of eating cooked freshwater crabs.

Parvatrema chaii n. sp. (Digenea: Gymnophallidae) from mice experimentally infected with metacercariae collected from surf-clam, Mactra veneriformis

  • Sohn, Woon-Mok;Na, Byoung-Kuk;Ryang, Yong-Suk;Ching, Hilda Lei;Lee, Soon-Hyung
    • Parasites, Hosts and Diseases
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    • v.45 no.2 s.142
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    • pp.115-120
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    • 2007
  • Parvatrema chaii n. sp. (Digenea: Gymnophallidae) is described using the worms recovered from experimentally infected mice in Korea. The metacercariae were collected from surf-clams, Mactra veneriformis, from a tidal flat in Sochon-gun, Chungchongnam-do. The metacercariae were elliptical ($0.262{\times}0.132 mm$), and the genital pore had an anterior arch of 16-17 sensory papillae in scanning electron microscopic view, Adult worms were ovoid to foliate (0.275-0.303 by 0.140-0.150 mm), and their characteristic features included the presence of lateral lips, short esophagus, genital pore located some distance anterior to the ventral sucker, club-shaped seminal vesicle, a compact to slightly lobed vitellarium, elliptical eggs (0.018-0.020 by 0.010-0.013 mm), and absence of the ventral pit. This gymnophallid is classified as a member of the genus Parvatrema because of the location of the wide genital pore some distance from the ventral sucker, and the absence of the ventral pit. It differs from previously reported Parvatrema species, including the type species, P. borinquenae. In particular, the morphologies of the vitellarium and the genital pore with an anterior arch of 16-17 sensory papillae are unique features. Therefore, we propose it as a new species, Parvatrema chaii n. sp. (Digenea: Gymnophallidae).

The Flora of Subalpine Vascular Plants in Seseok Area of Jirisan National Park (지리산국립공원 세석지역의 아고산 관속식물상)

  • Noh, Il;Chung, Jae-Min;Cho, Min-Gi;Kim, Tae-Woon;Moon, Hyun-Shik
    • Journal of Climate Change Research
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    • v.8 no.3
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    • pp.201-211
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    • 2017
  • This study was conducted to investigate the vascular plants which can be an indicator of environmental change in Seseok of Jirisan National Park. The purpose of this study was to find out the basic information for the subalpine species. This study showed that the area had a total 295 taxa including 63 families, 177 genus, 252 species, 2 subspecies, 36 variants 5 forms and Pte-Q was 1.7. Among them, Korea endemic plants were 15 taxa such as Abies koreana. Rare plants were 14 taxa such as Viola diamantiaca. Naturalized plants consisted of 5 taxa such as Rumex crispus. The floristic regional indicator plants found in surveyed area were 72 taxa comprising 3 taxa of grade V, 7 taxa of grade IV and 24 taxa of grade III. In summary, The subalpine plants of the survey region consisted of 37 taxa including Abies koreana and Gymnadenia cucullata. As rare plants distributed in subalpine zone respond sensitively to climate change, accuracy distribution range, environmental characteristics of habitat and population dynamics of rare plants should be evaluated quantitatively.

A Cytotaxonamical study of Rubus (Rosaceae) in Korea (한국산 산딸기속(Rubus)의 세포분류학적 연구)

  • Yang, Ji Young;Pak, Jae-Hong
    • Korean Journal of Plant Taxonomy
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    • v.35 no.2
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    • pp.129-142
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    • 2005
  • Somatic chromosome numbers of 19 taxa of Korean Rubus was investigated. Subg. Anoplobatus (2 species), subg. Cylactis (1 species), subg. Idaeobatus (15 taxa) and subg. Malachobatus (1 species) are found in Korea. All taxa belonging to subg. Idaeobatus except for R. parvifolius which shows tetrapolid and hexaploid are diploid. The basic chromosome number of the genus was x=7. New chromosome numbers for 5 taxa were reported here: R. hongnoensis of Jeju-island endemic species, 2n=14; R. longisepalus, 2n=14; R. longisepalus var. tozawai, 2n=14; R. parvifolius, 2n=28; R. parvifolius var. taquetii, 2n=28. The rest 12 taxa except for R. coreanus Miq was well counted as 2n=14 and well consistent with previous reports from China and Japan. Our new chromosome level for R. parvifolius as 6x may indicate that speciation by polyploidization has occurred within Korean population. Unlikely to Japanese population (2n=42), Korean population of R. buergeri has same ploidy level with Taiwanese population as 2n=56.

A Taxonomic Revision of the Subfamily Gobiinae(Pisces, Gobiidae) from Korea (한국산 망둑어아과 어류의 분류학적 재검토)

  • KIM Ik-Soo;LEE Yong-Joo;KIM Yong-Uk
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.20 no.6
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    • pp.529-542
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    • 1987
  • Thirty three species belonging to twenty genera in the subfamily Gobiinae of Korea were reviewed and key to species and genera were provided. Among them twenty seven species captured during 1985-1987 were examined on the cephalic sensory canal systems for the taxonomic review, and classified into 4 groups based on the presence or absence of the canal and their canal pore patterns. It was confirmed that the pore patterns of preopercular and anterior ocular-scapular canal were important in the diagnosis of gobiid genera or species and in the discussion of the specialized species group. It was considered that the genus of Acentrogobius masago should be transferred to Pseudogobius from Acentrogobius, because A. masago was more similar to P. jausnicus than to A. pflaumi and its congeneric species in their cephalicc sensory canal systems. Some populations of Chaenogobius annularis and Acanthogobius lactipes showed the geographical variations in cephalic pit organs and the number of predorsal scales. The endemic gobiid species was not found the Korean waters, but some species showed a disjunct distributions between the west and the east coast waters in Korea. The south coast was inhabited by the abundant species including twenty seven species of seventeen genera. The genera of Acanthogobius, Chaenogobius, and Chasmichthys were considered to be the common genera in Korean waters.

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Distribution Characteristics and Dynamics of the Lindera sericea Population at Mt. Mudeung, Mt. Cheonbong and Mt. Chogye (무등산, 천봉산 및 조계산에서 털조장나무 개체군의 분포특성과 동태)

  • Lim, Dong-ok;Choi, Dea-hun;Yun, Hong-gyun
    • Korean Journal of Environment and Ecology
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    • v.29 no.4
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    • pp.570-579
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    • 2015
  • Lindera sericea, which belongs to genus Lindera in the Lauraceae family, is labeled under Least Concerned (LC) among Korean rare plants, floristics specific species IV grade and also flagpole species of the Mudeung National Park. It is distributed in Mt. Mudeung, Mt. Cheonbong and Mt. Chogye within gradients from $12^{\circ}$ to $51^{\circ}$. The slope area is from northeast to northwest sides and the altitude range of distribution site is between 220 m and 533 m. The vascular plants in the quadrate where Lindera sericea were studied were identified as a total of 72 taxa; 37 families, 54 genera, 66 species, 5 variants and 1 forma. Among the floristics specific species, IV grade species was Lindera sericea and III grade species were Stewartia pseudocamellia and Acer palmatum. Korean endemic species were Stewartia pseudocamellia and Carex okamotoi. As for the vegetation group, Quercus mongolica and Q. serratak - Lindera sericea, Styrax japonicus populations were found in Mt. Mudeung area where Lindera sericea appeared, Stewartia pseudocamellia-Lindera sericea and Sasa borealis populations were found in Mt. Cheonbong areas, Carpinus laxiflora - Lindera sericea and Sasa borealis populations were found in Mt. Chogye area, and Stewartia pseudocamellia-Lindera sericea and Sasa borealis populations were found in Songgwangsa area. A total number of 662 Lindera sericea individuals were examined. The number of trees with 1 trunk including younger individuals was 353 (53.32%), and the number of trees with 2 to 5 stems was 270 (40.79%). The number of trees with the greatest number of sprouts was 27. Of 662 trees in total, the total number of sprouts was 1,198. Among these, 699 trees (58.34%) were between 50 cm and 150 cm in height. The tallest tree was 585 cm. The most common root-collar diameter of sprouts (992, 82.81%) was under 1 cm, followed by the sprouts with collar diameter from 1.0 to 1.5 cm(156, 13.2%). Among them, the largest root-collar diameter was 3.2 cm. This Lindera sericea specimen had the tallest trunk (565 cm) which was torn lengthwise on one side. Its root and breast parts were decayed by 50% and 25 respectively. Some branches of the three trunks that were more than 4 m in length were dead in the apical portion. Therefore, it is proposed that the Korean Lindera sericea maintains an apical dominance tree type while showing morphological adaptation as a typical shrub because it autonomously decays some branches and trunks over a certain height while increasing the number of its sprouts.