• 제목/요약/키워드: ITS sequencing

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SPEEDUP applications in control and optimization of process plant

  • Mushin, D.A.;Ward, P.S.;Pantelides, C.C;Macchietto, S.
    • 제어로봇시스템학회:학술대회논문집
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    • 제어로봇시스템학회 1989년도 한국자동제어학술회의논문집; Seoul, Korea; 27-28 Oct. 1989
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    • pp.841-843
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    • 1989
  • Aspects of modelling, performance monitoring, control and optimisation are discussed, with particular reference to the application of SPEEDUP. A new facility is described which allows SPEEDUP to operate in conjunction with other systems and several examples are briefly given of its power and flexibility. In particular, its use in on-line applications alongside plant management and distributed control systems is described and how it can be used in scheduling/sequencing problems in investigating batch and cyclic problems.

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Genotyping of a Korean isolate of Toxoplasma gondii by multilocus PCR-RFLP and microsatellite analysis

  • Quan, Juan-Hua;Kim, Tae-Yun;Choi, In-Uk;Lee, Young-Ha
    • Parasites, Hosts and Diseases
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    • 제46권2호
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    • pp.105-108
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    • 2008
  • Although the Korean isolate KI-1 of Toxoplasma gondii has been considered to be a virulent type I lineage because of its virulent clinical manifestations, its genotype is unclear. In the present study, genotyping of the KI-1 was performed by multilocus PCR-RFLP and microsatellite sequencing. For 9 genetic markers (c22-8, c29-2, L358, PK1, SAG2, SAG3, GRA6, BTUB, and Apico), the KI-1 and RH strains exhibited typical PCR-RFLP patterns identical to the type I strains. DNA sequencing of tandem repeats in 5 microsatellite markers (B17, B18, TUB2, W35, and TgM-A) of the KI-1 also revealed patterns characteristic of the type I. These results provide strong genetic evidence that KI-1 is a type I lineage of T. gondii.

Characterization of the complete mitochondrial genome of Mauritian sardinella, Sardinella jussieu (Lacepède, 1803), collected in the Banten Bay, Indonesia

  • Sektiana, Sinar Pagi;Andriyono, Sapto;Kim, Hyun-Woo
    • Fisheries and Aquatic Sciences
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    • 제20권10호
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    • pp.26.1-26.9
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    • 2017
  • Fishes in genus Sardinella are small pelagic species, which plays an important role in marine ecosystem as the first consumer. Those species are also commercially important, whose total catch reaches 278,600 tons in 2011 in Indonesia, but their identification has been difficult for their morphological similarity. In this study, we reported Sardinella jussieu for the first time in Indonesian coastal area (Banten Bay, Indonesia, $6^{\circ}\;0^{\prime}\;50.00^{{\prime}{\prime}}\;S-106^{\circ}\;10^{\prime}\;21.00^{{\prime}{\prime}}\;E$). We were able to confirm the species by both its morphological characteristics including the black spot at dorsal fin origin, the dusky pigmentation at caudal fin, 31 total scute numbers, and DNA sequence identity in the GenBank database by the molecular analysis. Its total mitochondrial genome was determined by the combination of next-generation sequencing and typical PCR strategy. The total mitochondrial genome of Sardinella jussieu (16,695 bp) encoded 13 proteins, 2 ribosomal RNAs, 22 transfer RNAs, and the putative control region. All protein-coding genes started with ATG and typical stop codon and ended with TAA or TAG except for ND4 in which AGA is used. Phylogenetic analyses of both COI region and full mitochondrial genome showed that S. jussieu is most closely related to Sardinella albella and Sardinella gibbosa

Complete mitochondrial genome of Nyctalus aviator and phylogenetic analysis of the family Vespertilionidae

  • Lee, Seon-Mi;Lee, Mu-Yeong;Kim, Sun-sook;Kim, Hee-Jong;Jeon, Hye Sook;An, Junghwa
    • Journal of Species Research
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    • 제8권3호
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    • pp.313-317
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    • 2019
  • Bats influence overall ecosystem health by regulating species diversity and being a major source of zoonotic viruses. Hence, there is a need to elucidate their migration, population structure, and phylogenetic relationship. The complete mitochondrial genome is widely used for studying the genome-level characteristics and phylogenetic relationship of various animals due to its high mutation rate, simple structure, and maternal inheritance. In this study, we determined the complete mitogenome sequence of the bird-like noctule (Nyctalus aviator) by Illumina next-generation sequencing. The sequences obtained were used to reconstruct a phylogenic tree of Vespertilionidae to elucidate the phylogenetic relationship among its members. The mitogenome of N. aviator is 16,863-bp long with a typical vertebrate gene arrangement, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative control region. Overall, the nucleotide composition is as follows: 32.3% A, 24.2% C, 14.3% G, and 29.2% T, with a slight AT bias (61.5%). The base composition of the 13 PCGs is as follows: 30.3% A, 13.4% G, 31.0% T, and 25.2% C. The phylogenetic analysis, based on 13 concatenated PCG sequences, infers that N. aviator is closely related to N. noctula with a high bootstrap value (100%).

Production of Bacterial Cellulose by Gluconacetobacter hansenii PJK Isolated from Rotten Apple

  • Park, Joong-Kon;Park, Youn-Hee;Jung, Jae-Yong
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제8권2호
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    • pp.83-88
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    • 2003
  • A cellulose-producing strain isolated from rotten apples was identified as Gluconacetobacter hansenii based on its physiological properties and the 16S rDNA complete sequencing method, and specifically named Gluconacetobacter hansenii PJK. The amount of bacterial cellulose (BC) produced by G. hansenii PJK in a shaking incubator was 1.5 times higher than that produced in a static culture. The addition of ethanol to the medium during cultivation enhanced the productivity of bacterial cellulose, plus the supplementation of 1% ethanol into the culture medium made the produced BC aggregate into a big lump and thus protected the bacterial-cellulose-producing G. hansenii PJK cells in the shear stress field from being converted into non-cellulose-producing (Cel) mutants. Cells subcultured three times in a medium containing ethanol retained their ability to produce BC without any loss in the production yield.

진화프로그램에 기반을 둔 혼합모델 조립라인의 투입순서를 위한 대화형 다목적 의사결정 기법 (An Interactive Multi-objective Decision Making Technique for Sequencing Mixed Model Assembly Lines Based on Evolution Programs)

  • 김여근;이수연
    • 대한산업공학회지
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    • 제25권3호
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    • pp.310-320
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    • 1999
  • A mixed model assembly line (MMAL) is a special type of production line where a variety of product models similar in product characteristics are assembled. Determining the model sequence is an important problem for the efficient use of MMALs. This paper considers interactive multiobjective decision making problems for MMAL sequencing. Evolution program is employed as an underlying framework. In this study, a way of approximating the linear utility function is first studied. To improve its search efficiency to the solution space preferred by a decision maker, some modifications of a standard evolution program are made: operating several subpopulations instead of a single population and merging two or more subpopulations to a single subpopulation, and using a Pareto pool. Extensive computational experiments are carried out to verify the performance of the proposed approach. The computational results show that our approach is promising in solution quality.

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자동공정설계(自動工程設計)에서 가공작업(加工作業)의 선정(選定) 및 순서결정(順序決定) 기법(技法)의 개발(開發) (An Automated Process Selection and Sequencing Method in Computer-Aided Process Planning)

  • 조규갑;김인호;노형민
    • 대한산업공학회지
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    • 제15권2호
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    • pp.45-55
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    • 1989
  • This paper deals with development of a computer-aided process selection and sequencing technique and its software for metal cutting processes of rotational parts. The process selection procedure consists of selection for proper machining operations and machine tools suitable for the selected operations. Machining operations are selected based on machining surface features and machine tools are selected by employing a conversion table which converts machining operations into machine tools. The process sequence is determined by the proper manipulation of the precedence relation matrix. A computer program for the proposed technique is developed by using Turbo-Pascal on IBM PC/AT compatible system. The proposed technique works well to real problems.

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A Dynamic Programming Model for the Project-Sequencing Problem

  • Yoo, Byeong-Woo
    • 대한산업공학회지
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    • 제5권1호
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    • pp.67-82
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    • 1979
  • For many capacity expansion problems, distinct capacity types must be specified to identify capacity at different locations or capacities with different costs and operating characteristics. In this study, a project-sequencing model is developed that allows operating costs to influence the timing decisions for project establishment. Under certain conditions, the power expansion formulation is derived that may be solved through the dynamic programming approach, and its first application to planning in electric power systems is selected to investigate an optimal policy and to show the impact of requiring system to service more than one type of demand. Several sample testing results indicate that in some systems the efficiency of the large nuclear plants is higher than that of smell ones that it may overcome the effects of the drop in reliability.

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효소적으로 증폭된 DNA의 염기배열법과 16S like 리보좀 유전자의 증폭 및 염기배열결정에의 응용 (Sequencing of Enzymatically Amplified DNA and Its Application to 16S Like Ribosomal Gene Amplification and Sequencing)

  • 이재동;주우홍
    • 생명과학회지
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    • 제2권2호
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    • pp.108-119
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    • 1992
  • 근년에 개발된 효소적인 DNA증폭법을 이용하면 일차구조상의 단편적인 정보만 알면 단 수시간내 해석에 필요한 양의 DNA가 증폭되어 cDNA의 염기배열결정의 신속화, 간편화가 가능하게 되었다. 그러므로 유전자증폭법으로써 PCR법에 관해 기술한다. 그리고 리보좀 RNA는 분자시계로서 생물의 계통을 논하는 데에 있어서는 최적의 조건을 갖춘 고분자화합물이다. 이에 PCR법을 이용한 16S like 리보좀DNA의 증폭법을 다루고, PCR증폭산물의 염기배열결정법에 대해 서술한다. 또한 인위적인 leading error 등을 배제하고 신속한 자동해독과 시간적인 절약이 자동 DNA sequencer의 개발과 시판으로 가능하게 되어 cDNA의 형광색소표식 염기배열결정법에 대해서도 서술한다.

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Distinct Mechanisms of DNA Sensing Based on N-Doped Carbon Nanotubes with Enhanced Conductance and Chemical Selectivity

  • Kim, Han Seul;Lee, Seung Jin;Kim, Yong-Hoon
    • 한국진공학회:학술대회논문집
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    • 한국진공학회 2014년도 제46회 동계 정기학술대회 초록집
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    • pp.415.1-415.1
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    • 2014
  • Carrying out first-principles calculations, we study N-doped capped carbon nanotube (CNT) electrodes applied to DNA sequencing. While we obtain for the face-on nucleobase junction configurations a conventional conductance ordering where the largest signal results from guanine according to its high highest occupied molecular orbital (HOMO) level, we extract for the edge-on counterparts a distinct conductance ordering where the low-HOMO thymine provides the largest signal. The edge-on mode is shown to operate based on a novel molecular sensing mechanism that reflects the chemical connectivity between N-doped CNT caps that can act both as electron donors and electron acceptors and DNA functional groups that include the hyperconjugated thymine methyl group[1].

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