• Title/Summary/Keyword: HisRS

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Polymorphisms in DNA Repair Genes and Risk of Glioma and Meningioma

  • Luo, Ke-Qin;Mu, Shi-Qing;Wu, Zhong-Xue;Shi, Yi-Ni;Peng, Ji-Cai
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.1
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    • pp.449-452
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    • 2013
  • Polymorphisms in DNA repair genes have been shown to influence DNA repair processes and to modify cancer susceptibility. Here we conducted a case-control study to assess the role of potential SNPs of DNA repair genes on the risk of glioma and meningioma. We included 297 cases and 458 cancer-free controls. Genotyping of XRCC1 Gln399Arg, XRCC1 Arg194Trp, XRCC2 Arg188His, XRCC3 Thr241Met, XRCC4 Ala247Ser, ERCC1 Asn118Asp, ERCC2 Lys751Gln and ERCC5 Asp1558His were performed in a 384-well plate format on the Sequenom MassARRAY platform. XRCC1 Arg194Trp (rs1799782) and ERCC2 Asp312Asn rs1799793 did not follow the HWE in control group, and genotype distributions of XRCC1 Gln399Arg rs25487, XRCC2 Arg188His rs3218536 and ERCC2 Asp312Asn rs1799793 were significantly different between cases and controls (P<0.05). We found XRCC1 399G/G, XRCC1 194 T/T and XRCC3 241T/T were associated with a higher risk when compared with the wild-type genotype. For ERCC5 Asp1558His, we found G/G genotype was associated with elevated susceptibility. In conclusion, our study has shown that XRCC1 Gln399Arg, XRCC1 Arg194Trp, XRCC3 Thr241Met and ERCC5 Asp1558His are associated with risk of gliomas and meningiomas. This finding could be useful in identifying the susceptibility genes for these cancers.

A VLSI Design of Modified Transform RS Decoder (개선된 변환영역 RS 복호기의 VLSI 설계)

  • 박혁찬;박종진국일호조원경
    • Proceedings of the IEEK Conference
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    • 1998.06a
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    • pp.281-284
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    • 1998
  • In this paper, a RS(Reed-Solomon) docoder is designed in the transform domain instead of most time domain. The transform RS decoder have simpler structure for error-correction procedure but because of his larger chip area, the time domain RS decoder is popular currently. To solve this proplem, the nomal basis representation and the conjugate property is utilized. Therefore the chip area can be reduced for the stucture of syndrome delay, nomalization and inverse transform circuit. These modified structures have been implemented using VHDL and synthesized on 0.8${\mu}{\textrm}{m}$ CMOS technology. The results have been compared with other structure for chip area and performance.

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Structural Basis for the Antibiotic Resistance of Eukaryotic Isoleucyl-tRNA Synthetase

  • Chung, Scisung;Kim, Sulhee;Ryu, Sung Ho;Hwang, Kwang Yeon;Cho, Yunje
    • Molecules and Cells
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    • v.43 no.4
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    • pp.350-359
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    • 2020
  • Pathogenic aminoacyl-tRNA synthetases (ARSs) are attractive targets for anti-infective agents because their catalytic active sites are different from those of human ARSs. Mupirocin is a topical antibiotic that specifically inhibits bacterial isoleucyl-tRNA synthetase (IleRS), resulting in a block to protein synthesis. Previous studies on Thermus thermophilus IleRS indicated that mupirocin-resistance of eukaryotic IleRS is primarily due to differences in two amino acids, His581 and Leu583, in the active site. However, without a eukaryotic IleRS structure, the structural basis for mupirocin-resistance of eukaryotic IleRS remains elusive. Herein, we determined the crystal structure of Candida albicans IleRS complexed with Ile-AMP at 2.9 A resolution. The largest difference between eukaryotic and prokaryotic IleRS enzymes is closure of the active site pocket by Phe55 in the HIGH loop; Arg410 in the CP core loop; and the second Lys in the KMSKR loop. The Ile-AMP product is lodged in a closed active site, which may restrict its release and thereby enhance catalytic efficiency. The compact active site also prevents the optimal positioning of the 9-hydroxynonanoic acid of mupirocin and plays a critical role in resistance of eukaryotic IleRS to anti-infective agents.

Improved Authentication Protocol for Privacy Protection in RFID Systems (프라이버시 보호를 위한 개선된 RFID 인증 프로토콜)

  • Oh, Sejin;Lee, Changhee;Yun, Taejin;Chung, Kyungho;Ahn, Kwangseon
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.38C no.1
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    • pp.12-18
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    • 2013
  • In 2012, Woosik Bae proposed a DAP3-RS(Design of Authentication Protocol for Privacy Protection in RFID Systems) using the hash function and AES(Advanced Encryption Standard) algorithm to hide Tag's identification and to generates variable data in every session. He argued that the DAP3-RS is safe from spoofing attack, replay attack, traffic analysis and etc. Also, the DAP3-RS resolved problem by fixed metaID of Hash-Lock protocol using AES algorithm. However, unlike his argue, attacker can pass authentication and traffic analysis using by same data and fixed hash value on the wireless. We proposed authentication protocol based on AES algorithm. Also, our protocol is secure and efficient in comparison with the DAP3-RS.

Molecular Docking Study of Aminoacyl-tRNA Synthetases with Ligand Molecules from Four Different Scaffolds

  • Bharatham, Nagakumar;Bharatham, Kavitha;Lee, Yu-No;Kim, Song-Mi;Lazar, Prettina;Baek, A-Young;Park, Chan-In;Eum, Hee-Sung;Ha, Hyun-Joon;Yun, Sae-Young;Lee, Won-Koo;Kim, Sung-Hoon;Lee, Keun-Woo
    • Bulletin of the Korean Chemical Society
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    • v.31 no.3
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    • pp.606-610
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    • 2010
  • Aminoacyl-tRNA synthetases (aaRSs) play vital roles in protein biosynthesis of living organisms and are interesting antibacterial drug targets. In order to find out new inhibitor candidate molecules as antibacterial agent, the binding modes of the candidate molecules were investigated at the active sites of aaRSs by molecular docking study. The docking simulations were performed with 48 compounds from four different scaffolds into the eight different aaRSs. The results show that scaffolds 3 and 4 compounds have consistently better binding capabilities, specifically for HisRS (E. coli) and IleRS (S. aureus). The binding modes of the best compounds with the proteins were well compatible with those of two ligands in crystal structures. Therefore, we expect that the final compounds we present may have reasonable aaRS inhibitory activity.

Spectrofluorometric Characteristics of the N-Terminal Domain of Riboflavin Synthase (아미노-말단 리보플라빈 생성효소 단백질의 형광 특성)

  • Kim, Ryu-Ryun;Yi, Jeong-Hwan;Nam, Ki-Seok;Ko, Kyung-Won;Lee, Chan-Yong
    • Korean Journal of Microbiology
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    • v.47 no.1
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    • pp.14-21
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    • 2011
  • Riboflavin synthase catalyzes the formation of one molecule of each riboflavin and 5-amino-6-ribitylamino-2,4-pyrimidinedione by the transfer of a 4-carbon moiety between two molecules of the substrates, 6,7-dimetyl-8-ribityllumazine. The most remarkable feature is the sequence similarity between the N-terminal half (1-97) and the C-terminal half domain (99-213). To investigate the structure and fluorescent characteristics of the N-terminal half of riboflavin synthase (N-RS) in Escherichia coli, more than 10 mutant genes coding for the mutated N-terminal domain of riboflavin synthase were generated by polymerase chain reaction. The genes coding for the proteins were inserted into pQE vector designed for easy purification of protein by 6X-His tagging system, expressed, and the proteins were purified. Almost all mutated N-terminal domain of riboflavin synthases bind to 6,7-dimethyl-8-ribityllumazine and riboflavin as fluorescent ligands. However, N-RS C47D and N-RS ET66,67DQ mutant proteins show colorless, indicating that fluorescent ligands were dissociated during purification. In addition, most mutated proteins show low fluorescent intensity comparing to N-RS wild type, whereas N-RS C48S posses stronger fluorescent intensity than that of wild type protein. Based on this result, N-RS C48S can be used as the tool for high throughput screening system for searching for the compound with inhibitory effect for the riboflavin synthase.

A novel mutation in XLRS1 gene in X-linked juvenile retinoschisis

  • Kim, Da Hyun;Heo, Sun Hee;Seo, Go Hun;Oh, Arum;Kim, Taeho;Kim, Gu-Hwan;Yoon, Young Hee;Yoo, Han-Wook;Lee, Beom Hee
    • Journal of Genetic Medicine
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    • v.15 no.1
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    • pp.13-16
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    • 2018
  • X-linked juvenile retinoschisis (XLRS) is characterized by the progressive loss of visual acuity and vitreous hemorrhage. XLRS is caused by a mutation of retinoschisin 1 (RS1) gene at Xp22.13. In the current report, a 2-year-old Korean patient with XLRS was described. The germline deletion of exon 1 was identified in the RS1 gene. Considering X-linked inheritance pattern, validation of a carrier state of a patient's mother is important for the genetic counseling of other family members and for the future reproductive plan. To confirm the carrier state of his mother, the multiplex ligation-dependent probe amplification analysis was done using peripheral leukocytes and found the heterozygous deletion of exon 1 in his mother.

Design of Mobile Telemedicine System using RFID based on Embedded Linux (임베디드 리눅스 환경에서 RFID 기반의 Mobile Telemedicine System 구현)

  • Yun, Chan-Young
    • Proceedings of the Korea Contents Association Conference
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    • 2006.05a
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    • pp.479-482
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    • 2006
  • Mobile Telemedicine uses common technologies that provide a conduit for information exchange between physicians nurses and patients. In addition to patient records, medical professionals will obtain vital signs and other reference data through Ubiquitous Sensor networks(USN). In this paper about a design and implementation of RFID reader platform that received RFID tag information from patients tags, transmit the data to SBC(Single board computer) based on Intel PXA255 ARM CPU and SBC transmit the data to MySQL server in hospital using by Wireless Internet. his system that based on Embedded Linux is composed of RFID module, ARM processor, RS-232 interface, and Wireless LAN. This paper also provides a brief overview and concept of RFID reader, and proposes the design and implementations of the RFID reader platform used QT and MySQL based on Embedded Linux.

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고려의 관학과 효경

  • 전준우
    • Journal of Korean Library and Information Science Society
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    • v.3
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    • pp.79-88
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    • 1976
  • In Ecorea Lrynasty, the authority all officers a compulsary obligatic.~ to learn the Nyo-I~.'z~\ulcorneruzngd er the custody of a super1 iscr o; Letters wino -1 a\ulcorner the ~ejponsible officer to train ci~ril senants. The Nyo-Kjli ilg was possible to interpret the pious love of ci I illans to the~re lders as a mutual ethics between the parental ber~ec;~lc nce and the filial piety of inferiors which n-as far superior to the traditional cthic; that was laid on an firm obligation of inieri~rs to tEei:- elders. The filial piety as a lovc for elders mean2 a mutual harrn~n:a~n d show\ulcorner a berieiolent conduct as an influence of a political morality. Thc heaer-o!erLt conduct was developed as a political morality of Confucius originated from the filial piety of Confucius based on a moral policj . Such a kenerolent conduct is to become a main spring to effect a mutual tie betn-een the king and his people as a national system of the Confucian theory. In i*

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Efficient Resource Recommendation System for Cloud Market Computing (클라우드 마켓 컴퓨팅을 위한 효율적인 리소스 추천시스템)

  • Han, Seung-Min;Huh, Eui-Nam;Youn, Chang-Woo
    • Journal of Internet Computing and Services
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    • v.11 no.3
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    • pp.121-129
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    • 2010
  • In recent years, Cloud computing is gaining much popularity as it can efficiently utilize the computing resources and hence can contribute to the issue of green IT. So to make the Cloud services commercialized, Cloud markets are necessary and are being developed. As the increasing numbers of various Cloud services are rapidly evolving in the Cloud market, how to select the best and optimal services will be a great challenge. In this paper we present a Cloud service selection framework in the Cloud market that uses a recommender system (RS) which helps a user to select the best services from different Cloud providers (CP) that matches his/her requirements. The RS recommends a service based on the QoS and Virtual Machine (VM) factors of difference CPs. The experimental results show that our Cloud service recommender system (CSRS) can effectively recommend a good combination of Cloud services to consumers.