• 제목/요약/키워드: Genetic evaluation

검색결과 893건 처리시간 0.028초

Global prevalence of classic phenylketonuria based on Neonatal Screening Program Data: systematic review and meta-analysis

  • Shoraka, Hamid Reza;Haghdoost, Ali Akbar;Baneshi, Mohammad Reza;Bagherinezhad, Zohre;Zolala, Farzaneh
    • Clinical and Experimental Pediatrics
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    • 제63권2호
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    • pp.34-43
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    • 2020
  • Phenylketonuria is a disease caused by congenital defects in phenylalanine metabolism that leads to irreversible nerve cell damage. However, its detection in the early days of life can reduce its severity. Thus, many countries have started disease screening programs for neonates. The present study aimed to determine the worldwide prevalence of classic phenylketonuria using the data of neonatal screening studies.The PubMed, Web of Sciences, Sciences Direct, ProQuest, and Scopus databases were searched for related articles. Article quality was evaluated using the Joanna Briggs Institute Critical Appraisal Evaluation Checklist. A random effect was used to calculate the pooled prevalence, and a phenylketonuria prevalence per 100,000 neonates was reported. A total of 53 studies with 119,152,905 participants conducted in 1964-2017 were included in this systematic review. The highest prevalence (38.13) was reported in Turkey, while the lowest (0.3) in Thailand. A total of 46 studies were entered into the meta-analysis for pooled prevalence estimation. The overall worldwide prevalence of the disease is 6.002 per 100,000 neonates (95% confidence interval, 5.07-6.93). The meta-regression test showed high heterogeneity in the worldwide disease prevalence (I2=99%). Heterogeneity in the worldwide prevalence of phenylketonuria is high, possibly due to differences in factors affecting the disease, such as consanguineous marriages and genetic reserves in different countries, study performance, diagnostic tests, cutoff points, and sample size.

CLUSTERING DNA MICROARRAY DATA BY STOCHASTIC ALGORITHM

  • Shon, Ho-Sun;Kim, Sun-Shin;Wang, Ling;Ryu, Keun-Ho
    • 대한원격탐사학회:학술대회논문집
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    • 대한원격탐사학회 2007년도 Proceedings of ISRS 2007
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    • pp.438-441
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    • 2007
  • Recently, due to molecular biology and engineering technology, DNA microarray makes people watch thousands of genes and the state of variation from the tissue samples of living body. With DNA Microarray, it is possible to construct a genetic group that has similar expression patterns and grasp the progress and variation of gene. This paper practices Cluster Analysis which purposes the discovery of biological subgroup or class by using gene expression information. Hence, the purpose of this paper is to predict a new class which is unknown, open leukaemia data are used for the experiment, and MCL (Markov CLustering) algorithm is applied as an analysis method. The MCL algorithm is based on probability and graph flow theory. MCL simulates random walks on a graph using Markov matrices to determine the transition probabilities among nodes of the graph. If you look at closely to the method, first, MCL algorithm should be applied after getting the distance by using Euclidean distance, then inflation and diagonal factors which are tuning modulus should be tuned, and finally the threshold using the average of each column should be gotten to distinguish one class from another class. Our method has improved the accuracy through using the threshold, namely the average of each column. Our experimental result shows about 70% of accuracy in average compared to the class that is known before. Also, for the comparison evaluation to other algorithm, the proposed method compared to and analyzed SOM (Self-Organizing Map) clustering algorithm which is divided into neural network and hierarchical clustering. The method shows the better result when compared to hierarchical clustering. In further study, it should be studied whether there will be a similar result when the parameter of inflation gotten from our experiment is applied to other gene expression data. We are also trying to make a systematic method to improve the accuracy by regulating the factors mentioned above.

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소아 결절성 경화증에서 나타나는 다양한 신증상들 (Various Renal Manifestations in Children with Tuberous Sclerosis Complex)

  • 임자현;박문성;배기수;김성환;신재일;박세진
    • Childhood Kidney Diseases
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    • 제18권2호
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    • pp.132-136
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    • 2014
  • 결절성 경화증은 과오종의 발생을 특징으로 하는 유전질환으로, 피부, 뇌, 심장, 눈, 폐, 구강, 신장 등의 다양한 장기들을 침범한다. 신장에서 관찰 가능한 다양한 병변들은 발생 빈도와 사망률이 높기 때문에 주의를 필요로 하며, 신장 증상의 이른 발생 시기를 고려하여 소아 연령에서부터 적절한 진단과 관리가 중요하다. 저자들은 소아 연령에서 발생한 거대 혈관근육지방종, 신세포암, 신경색, 신낭종, 그리고 신결석증 등이 동반된 결절성 경화증 4례를 경험하였기에 보고하는 바이다.

정신지체 및 발달지연으로 수용된 인구의 임상, 내분비 및 대사 질환 평가 (Clinical and Biochemical Evaluation of Institutionalized Population with Mental Retardation or Developmental Delay)

  • 김숙자;전영미;송웅주;김학성;조화연;길홍량;김승환
    • 대한유전성대사질환학회지
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    • 제12권2호
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    • pp.94-98
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    • 2012
  • Purpose: Developmental delay and mental retardation are frequently occurring disorders that present major socio-economic burden on the affected individual's family and society. Both can be congenital or acquired. However, a large number of people are institutionalized without exact diagnosis and, as a result, have not received proper care. Methods: 508 subjects with mental retardation or developmental delay from six institutions in Chung Buk Province were clinically evaluated and screened for metabolic and endocrinologic problems between 2000 and 2012. Results: Clinical genetic disorders were observed in 52 (10.2%) subjects. Cerebral palsy attributed to 21% of the institutionalized. 18 (3.5%) were diagnosed with metabolic disorders and 13 (2.6%) exhibited secondary endocrinologic dysfunction. Over 16% showed metabolic evidence of malnutrition. Conclusion: 21% and 3.5% of the population institutionalized due to mental retardation or developmental delay were afflicted by preventable cerebral palsy and metabolic disorders, respectively. Through early identification of the causes and early treatment, it may be possible to prevent, reduce, or alleviate the disability of many institutionalized individuals. Further research is imperative for establishing guidelines for diagnostic investigation for mental retardation.

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수집재래종대두의 자주빛무늬병(Cercospora kikuchii)에 대한 저항성검정 (Evaluation of Native Soybean Collection for Resistance to Purple Blotch)

  • 오정행;권신한
    • 한국응용곤충학회지
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    • 제20권3호
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    • pp.131-134
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    • 1981
  • 대두 자주빛무늬병에 대한 저항성인자원 선발을 위하여 한국에너지연구소, 방사선농학연색실이서 보존하고 있는 수집재내종을 자연감염율과 인공접종법에 의한 저항성검정을 실시하였다. 공시한 수집재래종 467 계통중 $28.9\%$$0.1\%$이하의 감염율을, 약 $13.4\% $$2\%$ 이상의 감염율을 보였으며 이 자연감염율은 결협초기의 기상조건과 밀접한 상관을 보였다. 종자접종에 의한 자반의 형성은 자연감염율과 정의 상관을 보여 일차적인 저항성 검정방법으로서 효과적이었으며 만숙대두계통은 병해도피에 의한 저항성을 보였다. 그리고 갈색무늬병균의 병원성과 관계되는 종자의 자반정도는 배양기의 착색정도와 높은 상관을 보였다.

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A case of isodicentric chromosome 15 presented with epilepsy and developmental delay

  • Kim, Jon Soo;Park, Jinyu;Min, Byung-Joo;Oh, Sun Kyung;Choi, Jin Sun;Woo, Mi Jung;Chae, Jong-Hee;Kim, Ki Joong;Hwang, Yong Seung;Lim, Byung Chan
    • Clinical and Experimental Pediatrics
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    • 제55권12호
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    • pp.487-490
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    • 2012
  • We report a case of isodicentric chromosome 15 (idic(15) chromosome), the presence of which resulted in uncontrolled seizures, including epileptic spasms, tonic seizures, and global developmental delay. A 10-month-old female infant was referred to our pediatric neurology clinic because of uncontrolled seizures and global developmental delay. She had generalized tonic-clonic seizures since 7 months of age. At referral, she could not control her head and presented with generalized hypotonia. Her brain magnetic resonance imaging scans and metabolic evaluation results were normal. Routine karyotyping indicated the presence of a supernumerary marker chromosome of unknown origin (47, XX +mar). An array-comparative genomic hybridization (CGH) analysis revealed amplification from 15q11.1 to 15q13.1. Subsequent fluorescence in situ hybridization analysis confirmed a idic(15) chromosome. Array-CGH analysis has the advantage in determining the unknown origin of a supernumerary marker chromosome, and could be a useful method for the genetic diagnosis of epilepsy syndromes associated with various chromosomal aberrations.

A New Isolation and Evaluation Method for Marine-Derived Yeast spp. with Potential Applications in Industrial Biotechnology

  • Zaky, Abdelrahman Saleh;Greetham, Darren;Louis, Edward J.;Tucker, Greg A.;Du, Chenyu
    • Journal of Microbiology and Biotechnology
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    • 제26권11호
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    • pp.1891-1907
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    • 2016
  • Yeasts that are present in marine environments have evolved to survive hostile environments that are characterized by high exogenous salt content, high concentrations of inhibitory compounds, and low soluble carbon and nitrogen levels. Therefore, yeasts isolated from marine environments could have interesting characteristics for industrial applications. However, the application of marine yeast in research or industry is currently very limited owing to the lack of a suitable isolation method. Current methods for isolation suffer from fungal interference and/or low number of yeast isolates. In this paper, an efficient and non-laborious isolation method has been developed and successfully isolated large numbers of yeasts without bacterial or fungal growth. The new method includes a three-cycle enrichment step followed by an isolation step and a confirmation step. Using this method, 116 marine yeast strains were isolated from 14 marine samples collected in the UK, Egypt, and the USA. These strains were further evaluated for the utilization of fermentable sugars (glucose, xylose, mannitol, and galactose) using a phenotypic microarray assay. Seventeen strains with higher sugar utilization capacity than the reference terrestrial yeast Saccharomyces cerevisiae NCYC 2592 were selected for identification by sequencing of the ITS and D1/D2 domains. These strains belonged to six species: S. cerevisiae, Candida tropicalis, Candida viswanathii, Wickerhamomyces anomalus, Candida glabrata, and Pichia kudriavzevii. The ability of these strains for improved sugar utilization using seawater-based media was confirmed and, therefore, they could potentially be utilized in fermentations using marine biomass in seawater media, particularly for the production of bioethanol and other biochemical products.

뇌전증 융합연구를 위한 MCS 녹아웃동물의 활용방안 (Evaluation of MCS Knockout Animal for Epilepsy Model)

  • 황규석;김옥희;김철희
    • 한국융합학회논문지
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    • 제7권2호
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    • pp.53-59
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    • 2016
  • 뇌전증은 뇌신경세포의 과흥분으로 인한 발작증상을 동반하는 질환이며, 최근 대단위 환자유전체 정보기술의 발달로 인해 뇌전증 발병의 원인으로서 유전자적 요인이 밝혀지고 있다. 본 연구에서는 지적장애 및 뇌전증 증상을 가지는 Miles-Carpenter syndrome (MCS)의 원인유전자에 대한 녹아웃동물을 활용하여 뇌전증 연구모델로 개발하고자 하였다. MCS 녹아웃 제브라피쉬는 억제성 GABA신경세포의 결손으로 인하여 비정상적으로 과다하게 움직이는 표현형을 나타내며, 이는 뇌전증 환자에서 보여지는 발작증상과 매우 유사한 것으로 판명되고 있다. 뇌전증 연구모델로 개발하기 위해, 기존에 알려진 뇌전증 치료제인 레티가빈을 MCS 녹아웃 제브라피쉬에 처리하여 약효를 평가하였으며 증상이 완화되는 것을 확인하였다. 이상의 결과들을 바탕으로 MCS 녹아웃동물이 향후 뇌전증 기전연구를 위한 동물모델로서의 융합적인 활용이 기대된다.

Analytical evaluation and experimental validation of energy harvesting using low-frequency band of piezoelectric bimorph actuator

  • Mishra, Kaushik;Panda, Subrata K.;Kumar, Vikash;Dewangan, Hukum Chand
    • Smart Structures and Systems
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    • 제26권3호
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    • pp.391-401
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    • 2020
  • The present article reports the feasibility of the electrical energy generation from ambient low-frequency vibration using a piezoelectric material mounted on a bimorph cantilever beam actuator. A corresponding higher-order analytical model is developed using MATLAB in conjunction with finite element method under low-frequency with both damped and undamped conditions. An alternate model is also developed to check the material and dimensional viability of both piezoelectric materials (mainly focussed to PVDF and PZT) and the base material. Also, Genetic Algorithm is implemented to find the optimum dimensions which can produce the higher values of voltage at low-frequency frequencies (≤ 100 Hz). The delamination constraints are employed to avoid inter-laminar stresses and to increase the fracture toughness. The delamination has been done using a Teflon sheet sandwiched in between base plates and the piezo material is stuck to the base plate using adhesives. The analytical model is tested for both homogenous and isotropic material characteristics of the base material and extended to investigate the effect of the different geometrical parameters (base plate dimensions, piezo layer dimensions and placement, delamination thickness and placement, excitation frequency) on the model responses of the bimorph cantilever beam. It has been observed that when the base material characteristics are homogenous, the efficiency of the model remains higher when compared to the condition when it is of isotropic material. The necessary convergence behaviour of the current numerical model has been established and checked for the accuracy by comparing with available published results. Finally, using the results obtained from the model, a prototype is fabricated for the experimental validation via a suitable circuit considering Glass fibre and Aluminium as the bimorph material.

미토콘드리아 Cytochrome b 유전자의 염기서열 분석을 이용한 한국산 총알고둥(복족강, 총앙고둥과)의 지리적 변이 및 오염.비오염지역간의 유전적 다양성 (Geographic Variation and Genetic Diversity between Polluted and Unpolluted Sites of Korean Littorina brevicula(Gastropoda, Littorinidae) Based on the Mitochondrial Cytochrome b Gene Sequence)

  • Suh, Jae-Hwa;Kim, Sook-Jung;Song, Jun-Im
    • Animal Systematics, Evolution and Diversity
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    • 제18권1호
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    • pp.75-84
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    • 2002
  • 한국산 총알고둥(Littorina brevicula)의 지리적 변이를 조사하기 위하여 동해안, 남해안, 서해안에서 총 11개 집단 106개체를 대상으로 미토콘드리아 DNA cytochrome b 유전자의 염기서열을 분석하였으며, 분석 결과 총 500 bp의 염기서열을 검출하였다 검출된 염기서열을 대상으로 염기치환 유무 및 치환 장소를 비교한 결과 13종류의 haplotype으로 구분되었으며, 그 중 LbA가 주 haplotype으로 나타났다. LbA의 평균 출현빈도는 0.877이었으며, 동해안은 0.82, 남해안 0.70, 서해안 1.00으로 각각 나타나 동해안 집단이 타 집단에 비해 haplotype의 다양성이 더 높았다. 특히 오염지역과 비오염지 역간의 비교에서는 8종류의 haplotype이 구분되었으며, 역시 LbA가 주 haplotype으로 나타났다.