• Journal of Plant Biotechnology
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• 제36권2호
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• pp.106-114
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• 2009

Genetic components introduced into approved GM crops are a key subject for safety assessment and provide a basis for the development of detection methods for GM crops. In order to understand the genetic components in approved GM crops comprehensively, we screened the genetic vector maps of GM crops that had been approved for commercialization around the world. A total of 64 varieties from 5 major GM crop species (maize, canola, cotton, soybean, and tomato) were subjected to analysis. The genetic components included genes, promoters, terminators, and selection marker. This survey may be useful for researchers who develop GM crops and methods for detecting GM crops.

• 통합자연과학논문집
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• 제8권2호
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• pp.117-127
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• 2015

Lentil (Lens culinaris Medik.) is one of the important legumes and cheaper source of protein in Bangladesh that displays great biological diversity. Isozyme, one of the most important protein markers to detect genetic polymorphism in lentil, whereas we considered thirteen-isozyme in six varieties viz., BARI masur-1, BARI masur-2, BARI masur-3, BARI masur-4, BARI masur-5 and BARI masur-6. The highest polymorphism was found in tyrosinase isozyme system. UPGMA analysis revealed that the highest similarity between BARI masur-5 and BARI masur-6 whereas, the highest genetic distance between BARI masur-1 and BARI masur-5 reflecting higher intervarietal variation. Principal component analysis (PCA) also revealed the similar results that of unweighted pair group method with arithmetic mean (UPGMA). The first, second and third PCs contributed 81.58%, 11.19% and 4.94% variation respectively, with cumulative variation of the first three PCs was 75.45%. Consequently, Isozyme could clearly assed the genetic diversity at intervarietal levels and these two varieties can be considered as valuable gene resources for future breeding and conservation programs.

• Journal of Ecology and Environment
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• 제36권3호
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• pp.205-210
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• 2013

Cicuta virosa L. (Apiaceae) is a perennial emergent plant designated as an endangered species in South Korea. According to the former records, only four natural habitats remain in South Korea. A former study suggested that three of four populations (Pyeongchang: PC, Hoengseong: HS, Gunsan: GS) would be classified as different ecotypes based on their different morphological characteristics and life cycle under different environmental conditions. To evaluate this suggestion, we estimated genetic diversity in each population and distance among three populations by random amplification of polymorphic DNA. Seven random primers generated a total of 61 different banding positions, 36 (59%) of them were polymorphic. Nei's gene diversity and the Shannon diversity index increased in the order of PC < HS < GS, which is the same order of population size. In the two-dimensional (2D) plot of first two principal components in principal component analysis with the presence of 61 loci, individuals could be grouped as three populations easily (proportion of variance = 0.6125). Nei's genetic distance for the three populations showed the same tendency with the geographical distance within three populations. And it is also similar to the result of discriminant analysis with the morphological or life-cycle factors from the previous study. From the results, we concluded that three different populations of C. virosa should be classified as ecotypes based on not only morphology and phenology but genetic differences in terms of diversity and distance as well.

• 한국농림기상학회지
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• 제19권4호
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• pp.203-214
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• 2017

본 연구에서는 진주, 수원, 춘천의 정보로만 추정한 유전 모수(New1~New3)와 지역 조합으로 추정한 유전 모수(New4~New7), NICS (2010)와 Kim et al. (2004)의 유전 모수의 개화시기 및 잠재수량의 예측력을 평가하여 기존의 유전 정보와 새로운 유전 정보에 대한 불확실 정도를 알고 다음 후속 연구에 활용 가능성을 알아보고자 수행했다. 결과적으로, 개별 및 지역조합 유전 모수에서 모수 추정 지점 혹은 참여한 지점의 유전 모수의 평가 지표들은 비교적 좋은 결과를 보여 주었지만 뚜렷하게 나타나지 않았다. 대구, 밀양, 전주에서 New7 유전 모수의 개화시기의 예측력은 NICS (2010)나 Kim et al. (2004)의 유전 모수의 개화 시기 예측력보다 개선되지 않았다. 그러나 New7 유전 모수의 잠재수량의 예측력은 큰 차이는 아니지만 NICS (2010)나 Kim et al. (2004)의 유전 모수의 잠재 수량 예측력보다 개선되는 현상을 보였다. 예를 들면, 밀양에서 NICS (2010)와 Kim et al. (2004)의 유전 모수의 잠재수량 결정계수가 0.00과 0.01로 전혀 예측력이 없는 것으로 평가하였지만 New7 유전 모수의 잠재수량 결정계수는 0.31로 나타났다. 반면, 전주에서 NICS (2010)과 Kim et al. (2004)의 유전 모수의 잠재수량 결정계수는 0.66과 0.41로 평가되었는데, New7 유전 모수의 잠재수량 결정계수는 0.00으로 예측력이 없는 것으로 평가되었다. 새로운 유전 모수의 예측력(New1~New7)이 기존의 유전 모수(NICS (2010)과 Kim et al. (2004))의 예측력보다 크게 개선되지는 않았지만, 평가 결과가 좋은 지역 조합 유전 모수를 지역별 개화시기 및 잠재수량을 예측하는 데에는 활용할 수 있을 것으로 판단된다.

• 한국지능시스템학회논문지
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• 제8권6호
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• pp.58-69
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• 1998

This paper introduces a novel neuro-fuzzy system based on the polynomial fuzzy neural network(PFNN) architecture. The PFNN consists of a set of if-then rules with appropriate membership functions whose parameters are optimized via a hybrid genetic algorithm. A polynomial neural network is employed in the defuzzification scheme to improve output performance and to select appropriate rules. A performance criterion for model selection, based on the Group Method of DAta Handling is defined to overcome the overfitting problem in the modeling procedure. The hybrid genetic optimization method, which combines a genetic algorithm and the Simplex method, is developed to increase performance even if the length of a chromosome is reduced. A novel coding scheme is presented to describe fuzzy systems for a dynamic search rang in th GA. For a performance assessment of the PFNN inference system, three well-known problems are used for comparison with other methods. The results of these comparisons show that the PFNN inference system outperforms the other methods while it exhibits exceptional robustness characteristics.

• Geomechanics and Engineering
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• 제15권4호
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• pp.937-945
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• 2018

A probabilistic study of a reinforced earth wall in a frictional soil using the surface response methodology (RSM) is presented. A deterministic model based on numerical simulations is used (Abdelouhab et al. 2011, 2012b) and the serviceability limit state (SLS) is considered in the analysis. The model computes the maximum horizontal displacement of the wall. The response surface methodology is utilized for the assessment of the Hasofer-Lind reliability index and is optimized by the use of a genetic algorithm. The soil friction angle and the unit weight are considered as random variables while studying the SLS. The assumption of non-normal distribution for the random variables has an important effect on the reliability index for the practical range of values of the wall horizontal displacement.

• 대한전기학회:학술대회논문집
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• 대한전기학회 1995년도 추계학술대회 논문집 학회본부
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• pp.64-66
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• 1995

This paper presents a new approach to evaluate optimal basic reliability indices of electric distribution systems using genetic algorithm. The use of optimal reliability evaluation is an important aspect of distribution system planning and operation to determine adequacy reliability level of each area. In this paper, the reliability model is based on the analytical method, connecting component failure to load point outage in each section. The proposed method applies genetic algorithm to calculate the optimal values of basic reliability indices, ie. failure rate and repair time, for a load point in the power distribution system, subject to minimizing interruption cost. Test results for the model system are reported in the paper compared with a direct optimization method(gradient projection).

• Structural Engineering and Mechanics
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• 제71권4호
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• pp.329-339
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• 2019

Assessment of failure probability, especially for a complex structure, requires a considerable number of calls to the numerical model. Reliability methods have been developed to decrease the computational time. In this approach, the original numerical model is replaced by a surrogate model which is usually explicit and much faster to evaluate. The current paper proposed an efficient reliability method based on Monte Carlo simulation (MCS) and multi-gene genetic programming (MGGP) as a robust variant of genetic programming (GP). GP has been applied in different fields; however, its application to structural reliability has not been tested. The current study investigated the performance of MGGP as a surrogate model in structural reliability problems and compares it with other surrogate models. An adaptive Metropolis algorithm is utilized to obtain the training data with which to build the MGGP model. The failure probability is estimated by combining MCS and MGGP. The efficiency and accuracy of the proposed method were investigated with the help of five numerical examples.

• 한국자원식물학회지
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• 제25권6호
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• pp.762-772
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• 2012

The objective of this study was to analyze the genetic diversity using SSR marker and investigate the fatty acid composition of perilla (P. frutescens var. frutescens) germplasm. Genetic diversity among 95 accessions, which consisted of 29 weedy types and 66 landrace accessions, was evaluated based on 12 SSR markers carrying 91 alleles. The mean values of observed ($H_O$) and expected heterozygosities ($H_E$) were 0.574 and 0.640, respectively, indicating a considerable amount of polymorphism within this collection. A genetic distance-based phylogeny grouped into two distinct groups, which were the landrace, moderate and weedy type, genetic distance (GD) value was 0.609. The physicochemical traits about crude oil contents and fatty acid compositions were analyzed using GC. Among tested germplasm, the total average oil contents (%) showed a range from 28.57 to 49.67 %. Five fatty acids and their contents in the crude oils are as follows: ${\alpha}$-linolenic acid (41.12%-51.81%), linoleic acid (15.38%-16.43%), oleic acid (18.93%-27.28%), stearic acid (2.56%-4.01%), and palmitic acid (7.38%-10.77%). The average oil content of wild types was lower than landrace, and the oil content of middle genotype accessions was higher than other germplasm, but no significant variation between landrace and wild types was shown. Nevertheless, IT117174, landrace of Korea, was highest in crude oil content (47.11%) and linolenic acid composition (64.58%) among the used germplasm. These traits of the selected accessions will be helped for new functional plant breeding in perilla crop.

• Asian-Australasian Journal of Animal Sciences
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• 제21권3호
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• pp.331-339
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• 2008

The genetic structure and diversity of 15 Chinese indigenous chicken breeds was investigated using 29 microsatellite markers. The total number of birds examined was 542, on average 36 birds per breed. A total of 277 alleles (mean number 9.55 alleles per locus, ranging from 2 to 25) was observed. All populations showed high levels of heterozygosity with the lowest estimate of 0.440 for the Gushi chickens, and the highest one of 0.644 observed for Wannan Three-yellow chickens. The global heterozygote deficit across all populations (FIT) amounted to 0.180 (p<0.001). About 16% of the total genetic variability originated from differences between breeds, with all loci contributing significantly to this differentiation. An unrooted consensus tree was constructed using the Neighbour-Joining method and pair-wise distances based on marker estimated kinships. Two main groups were found. The heavy-body type populations grouped together in one cluster while the light-body type populations formed the second cluster. The STRUCTURE software was used to assess genetic clustering of these chicken breeds. Similar to the phylogenetic analysis, the heavy-body type and light-body type populations separated first. Clustering analysis provided an accurate representation of the current genetic relations among the breeds. Remarkably similar breed rankings were obtained with all methods.