• Title/Summary/Keyword: Generalized linear mixed model

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Use of Generalized Linear Mixed Model for Pest Density in Repeated Measurement Data

  • Park, Heung-Sun;Cho, Ki-Jong
    • Proceedings of the Korean Statistical Society Conference
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    • 2003.05a
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    • pp.69-74
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    • 2003
  • The estimation of pest density is a prime concern of Integrated Pest Management (IPM) because the success of artificial intervention such as spraying pestcides or natural enemies depends on pest density. Also, the spatial pattern of pest population within plants or plots has been studies in various ways. In this study, we applied generalized linear mixed model to Tetranychus urticae Koch , two-spotted spider mite count in glasshouse grown roses. For this analysis, the subject-specific as well as pupulation-averaged approaches are used.

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The LMI mixed ${H_2}/H_{\infty}$ control of inverted pendulum system using LFR (도립진자 시스템의 LFR에 의한 LMI 혼합 ${H_2}/H_{\infty}$ 제어)

  • 박종우;이상철;이상효
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.25 no.7A
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    • pp.967-977
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    • 2000
  • In this paper, we apply a mixed $H_2/H_{\infty}$ control to a generalized plant of inverted pendulum system represented by an LFR(Linear Fractional Representation). First, in order to obtain the generalized plant, the linear model of the inverted pendulum represented by an LFR(Linear fractional Representation) is derived. In LFR, we consider system uncertainties as three nonlinear components and a pendulum mass uncertainty. Augmenting the LFR model by adding weighting functions, we get a generalized plant. And then, we design a mixed $H_2/H_{\infty}$ controller for the generalized plant. In order to design the mixed $H_2/H_{\infty}$ controller, we use the LMI technique. To evaluate control performances and robust stability of the mixed $H_2/H_{\infty}$ controller designed, we compare it with the $H_{\infty}$ controller through the simulation and experiment. In the result, with the fewer feedback information, the mixed $H_2/H_{\infty}$ controller shows the better control performances and robust stability than the $H_{\infty}$ controller in the sense of pendulum angle.

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Maximum likelihood estimation of Logistic random effects model (로지스틱 임의선형 혼합모형의 최대우도 추정법)

  • Kim, Minah;Kyung, Minjung
    • The Korean Journal of Applied Statistics
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    • v.30 no.6
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    • pp.957-981
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    • 2017
  • A generalized linear mixed model is an extension of a generalized linear model that allows random effect as well as provides flexibility in developing a suitable model when observations are correlated or when there are other underlying phenomena that contribute to resulting variability. We describe maximum likelihood estimation methods for logistic regression models that include random effects - the Laplace approximation, Gauss-Hermite quadrature, adaptive Gauss-Hermite quadrature, and pseudo-likelihood. Applications are provided with social science problems by analyzing the effect of mental health and life satisfaction on volunteer activities from Korean welfare panel data; in addition, we observe that the inclusion of random effects in the model leads to improved analyses with more reasonable inferences.

Gamma Mixed Model to Improve Sib-Pair Linkage Analysis (감마 혼합 모형을 통한 반복 측정된 형제 쌍 연관 분석 사례연구)

  • Kim, Jeonghwan;Suh, Young Ju;Won, Sungho;Nah, Jeung Weon;Lee, Woojoo
    • The Korean Journal of Applied Statistics
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    • v.28 no.2
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    • pp.221-230
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    • 2015
  • Traditionally, sib-pair linkage analysis with repeated measures has employed linear mixed models, but it suffers from the lack of power to find genetic marker loci associated with a phenotype of interest. In this paper, we use a gamma mixed model to improve sib-pair linkage analysis and compare it with a linear mixed model in terms of power and Type I error. We illustrate that the use of gamma mixed model can achieve higher power than linear mixed model with Genetic Analysis Workshop 13 data.

Cumulative Sums of Residuals in GLMM and Its Implementation

  • Choi, DoYeon;Jeong, KwangMo
    • Communications for Statistical Applications and Methods
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    • v.21 no.5
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    • pp.423-433
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    • 2014
  • Test statistics using cumulative sums of residuals have been widely used in various regression models including generalized linear models(GLM). Recently, Pan and Lin (2005) extended this testing procedure to the generalized linear mixed models(GLMM) having random effects, in which we encounter difficulties in computing the marginal likelihood that is expressed as an integral of random effects distribution. The Gaussian quadrature algorithm is commonly used to approximate the marginal likelihood. Many commercial statistical packages provide an option to apply this type of goodness-of-fit test in GLMs but available programs are very rare for GLMMs. We suggest a computational algorithm to implement the testing procedure in GLMMs by a freely accessible R package, and also illustrate through practical examples.

The $H_2/ H_\infty$ control of inverted pendulum system using linear fractional representation (도립진자 시스템에 선형 분수 표현법을 이용한 $H_2/ H_\infty$ 제어)

  • 곽칠성;최규열
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.3 no.4
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    • pp.875-885
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    • 1999
  • This paper presents an application of LMI-based techniques to the mixed $H_2/ H_\infty$ control of an inverted pendulum. The linear model of the inverted pendulum represented by an LFR(Linear Fractional Representation) model of uncertainties is derived. Considered uncertainties are three nonlinear components and a parameter uncertainty Augmenting the LFR model by adding weighting functions, we get a generalized plant, for which we design a mixed $H_2/ H_\infty$ controller using the LMI technique. To evaluate control performances and robust stability of the mixed $H_2/ H_\infty$ controller designed, we compare it with the $ H_\infty$controller through the simulation and experiment. The mixed $H_2/ H_\infty$ controller shows the better control performances and robust stability than the $H_\infty$controller in the sense of pendulum angle.

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Review of Mixed-Effect Models (혼합효과모형의 리뷰)

  • Lee, Youngjo
    • The Korean Journal of Applied Statistics
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    • v.28 no.2
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    • pp.123-136
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    • 2015
  • Science has developed with great achievements after Galileo's discovery of the law depicting a relationship between observable variables. However, many natural phenomena have been better explained by models including unobservable random effects. A mixed effect model was the first statistical model that included unobservable random effects. The importance of the mixed effect models is growing along with the advancement of computational technologies to infer complicated phenomena; subsequently mixed effect models have extended to various statistical models such as hierarchical generalized linear models. Hierarchical likelihood has been suggested to estimate unobservable random effects. Our special issue about mixed effect models shows how they can be used in statistical problems as well as discusses important needs for future developments. Frequentist and Bayesian approaches are also investigated.

Negative binomial loglinear mixed models with general random effects covariance matrix

  • Sung, Youkyung;Lee, Keunbaik
    • Communications for Statistical Applications and Methods
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    • v.25 no.1
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    • pp.61-70
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    • 2018
  • Modeling of the random effects covariance matrix in generalized linear mixed models (GLMMs) is an issue in analysis of longitudinal categorical data because the covariance matrix can be high-dimensional and its estimate must satisfy positive-definiteness. To satisfy these constraints, we consider the autoregressive and moving average Cholesky decomposition (ARMACD) to model the covariance matrix. The ARMACD creates a more flexible decomposition of the covariance matrix that provides generalized autoregressive parameters, generalized moving average parameters, and innovation variances. In this paper, we analyze longitudinal count data with overdispersion using GLMMs. We propose negative binomial loglinear mixed models to analyze longitudinal count data and we also present modeling of the random effects covariance matrix using the ARMACD. Epilepsy data are analyzed using our proposed model.

Genetic Parameter Estimation with Normal and Poisson Error Mixed Models for Teat Number of Swine

  • Lee, C.;Wang, C.D.
    • Asian-Australasian Journal of Animal Sciences
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    • v.14 no.7
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    • pp.910-914
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    • 2001
  • The teat number of a sow plays an important role for weaning pigs and has been utilized in selection of swine breeding stock. Various linear models have been employed for genetic analyses of teat number although the teat number can be considered as a count trait. Theoretically, Poisson error mixed models are more appropriate for count traits than Normal error mixed models. In this study, the two models were compared by analyzing data simulated with Poisson error. Considering the mean square errors and correlation coefficients between observed and fitted values, the Poisson generalized linear mixed model (PGLMM) fit the data better than the Normal error mixed model. Also these two models were applied to analyzing teat numbers in four breeds of swine (Landrace, Yorkshire, crossbred of Landrace and Yorkshire, crossbred of Landrace, Yorkshire, and Chinese indigenous Min pig) collected in China. However, when analyzed with the field data, the Normal error mixed model, on the contrary, fit better for all the breeds than the PGLMM. The results from both simulated and field data indicate that teat numbers of swine might not have variance equal to mean and thus not have a Poisson distribution.

Hurdle Model for Longitudinal Zero-Inflated Count Data Analysis (영과잉 경시적 가산자료 분석을 위한 허들모형)

  • Jin, Iktae;Lee, Keunbaik
    • The Korean Journal of Applied Statistics
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    • v.27 no.6
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    • pp.923-932
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    • 2014
  • The Hurdle model can to analyze zero-inflated count data. This model is a mixed model of the logit model for a binary component and a truncated Poisson model of a truncated count component. We propose a new hurdle model with a general heterogeneous random effects covariance matrix to analyze longitudinal zero-inflated count data using modified Cholesky decomposition. This decomposition factors the random effects covariance matrix into generalized autoregressive parameters and innovation variance. The parameters are modeled using (generalized) linear models and estimated with a Bayesian method. We use these methods to carefully analyze a real dataset.