• Title/Summary/Keyword: G-Index

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Network Graph Analysis of Gene-Gene Interactions in Genome-Wide Association Study Data

  • Lee, Sungyoung;Kwon, Min-Seok;Park, Taesung
    • Genomics & Informatics
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    • v.10 no.4
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    • pp.256-262
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    • 2012
  • Most common complex traits, such as obesity, hypertension, diabetes, and cancers, are known to be associated with multiple genes, environmental factors, and their epistasis. Recently, the development of advanced genotyping technologies has allowed us to perform genome-wide association studies (GWASs). For detecting the effects of multiple genes on complex traits, many approaches have been proposed for GWASs. Multifactor dimensionality reduction (MDR) is one of the powerful and efficient methods for detecting high-order gene-gene ($G{\times}G$) interactions. However, the biological interpretation of $G{\times}G$ interactions identified by MDR analysis is not easy. In order to aid the interpretation of MDR results, we propose a network graph analysis to elucidate the meaning of identified $G{\times}G$ interactions. The proposed network graph analysis consists of three steps. The first step is for performing $G{\times}G$ interaction analysis using MDR analysis. The second step is to draw the network graph using the MDR result. The third step is to provide biological evidence of the identified $G{\times}G$ interaction using external biological databases. The proposed method was applied to Korean Association Resource (KARE) data, containing 8838 individuals with 327,632 single-nucleotide polymorphisms, in order to perform $G{\times}G$ interaction analysis of body mass index (BMI). Our network graph analysis successfully showed that many identified $G{\times}G$ interactions have known biological evidence related to BMI. We expect that our network graph analysis will be helpful to interpret the biological meaning of $G{\times}G$ interactions.

An Intelligent Decision Support System for Selecting Promising Technologies for R&D based on Time-series Patent Analysis (R&D 기술 선정을 위한 시계열 특허 분석 기반 지능형 의사결정지원시스템)

  • Lee, Choongseok;Lee, Suk Joo;Choi, Byounggu
    • Journal of Intelligence and Information Systems
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    • v.18 no.3
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    • pp.79-96
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    • 2012
  • As the pace of competition dramatically accelerates and the complexity of change grows, a variety of research have been conducted to improve firms' short-term performance and to enhance firms' long-term survival. In particular, researchers and practitioners have paid their attention to identify promising technologies that lead competitive advantage to a firm. Discovery of promising technology depends on how a firm evaluates the value of technologies, thus many evaluating methods have been proposed. Experts' opinion based approaches have been widely accepted to predict the value of technologies. Whereas this approach provides in-depth analysis and ensures validity of analysis results, it is usually cost-and time-ineffective and is limited to qualitative evaluation. Considerable studies attempt to forecast the value of technology by using patent information to overcome the limitation of experts' opinion based approach. Patent based technology evaluation has served as a valuable assessment approach of the technological forecasting because it contains a full and practical description of technology with uniform structure. Furthermore, it provides information that is not divulged in any other sources. Although patent information based approach has contributed to our understanding of prediction of promising technologies, it has some limitations because prediction has been made based on the past patent information, and the interpretations of patent analyses are not consistent. In order to fill this gap, this study proposes a technology forecasting methodology by integrating patent information approach and artificial intelligence method. The methodology consists of three modules : evaluation of technologies promising, implementation of technologies value prediction model, and recommendation of promising technologies. In the first module, technologies promising is evaluated from three different and complementary dimensions; impact, fusion, and diffusion perspectives. The impact of technologies refers to their influence on future technologies development and improvement, and is also clearly associated with their monetary value. The fusion of technologies denotes the extent to which a technology fuses different technologies, and represents the breadth of search underlying the technology. The fusion of technologies can be calculated based on technology or patent, thus this study measures two types of fusion index; fusion index per technology and fusion index per patent. Finally, the diffusion of technologies denotes their degree of applicability across scientific and technological fields. In the same vein, diffusion index per technology and diffusion index per patent are considered respectively. In the second module, technologies value prediction model is implemented using artificial intelligence method. This studies use the values of five indexes (i.e., impact index, fusion index per technology, fusion index per patent, diffusion index per technology and diffusion index per patent) at different time (e.g., t-n, t-n-1, t-n-2, ${\cdots}$) as input variables. The out variables are values of five indexes at time t, which is used for learning. The learning method adopted in this study is backpropagation algorithm. In the third module, this study recommends final promising technologies based on analytic hierarchy process. AHP provides relative importance of each index, leading to final promising index for technology. Applicability of the proposed methodology is tested by using U.S. patents in international patent class G06F (i.e., electronic digital data processing) from 2000 to 2008. The results show that mean absolute error value for prediction produced by the proposed methodology is lower than the value produced by multiple regression analysis in cases of fusion indexes. However, mean absolute error value of the proposed methodology is slightly higher than the value of multiple regression analysis. These unexpected results may be explained, in part, by small number of patents. Since this study only uses patent data in class G06F, number of sample patent data is relatively small, leading to incomplete learning to satisfy complex artificial intelligence structure. In addition, fusion index per technology and impact index are found to be important criteria to predict promising technology. This study attempts to extend the existing knowledge by proposing a new methodology for prediction technology value by integrating patent information analysis and artificial intelligence network. It helps managers who want to technology develop planning and policy maker who want to implement technology policy by providing quantitative prediction methodology. In addition, this study could help other researchers by proving a deeper understanding of the complex technological forecasting field.

Macroalgal Community Structure on the Subtidal of Southern Six Islands, Korea (남해안 6개 도서의 조하대 해조류 군집구조)

  • Heo, Jin suk;Yoo, Hyun Il;Park, Eun jung;Ha, Dong Soo
    • Korean Journal of Environmental Biology
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    • v.35 no.4
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    • pp.595-603
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    • 2017
  • The macroalgal community structure was examined at the subtidal zones of six study sites, on the Southern coast of Korea from between May and August 2015. A total of 132 seaweeds, comprising 10 green, 28 brown and 94 red Seaweed, were identified. The seaweed biomass was $80.32g\;dry\;wt.\;m^{-2}$ in average, and it was maximal at Geomundo ($166.94g\;dry\;wt.\;m^{-2}$) and minimal at Byeongpungdo ($14.52g\;dry\;wt.\;m^{-2}$). On the basis of the biomass, the Ecklonia cava was a representative species, distributed widely in the subtidal zone of the three islands (Yeoseodo, Geomundo, Baekdo). Also, the Sargassum sp. was dominant at Sejondo and Hongdo. The turbidity and light transmittance was divided into two groups. The seaweed community structure of group A (Byeongpungdo, Sejondo, Geomundo) was characterized by high turbidity, low light transmittance and a lower habitat depth than were observed in group B (Hongdo, Baekdo, Yeoseodo). As the water depth increased, the biomass decreased due to the lowered light transmittance. In Byeongpungdo and Sejondo, which showed high turbidity and low light transmittance, the degree of seaweed coverage was decreased with the depth of water. The ESGII ratio of the Ecological Status Group was higher than fourty percentage in Byeongpungdo and Baekdo. Community indices were as follows: dominance index (DI) 0.35-0.90, richness index (R) 7.03-17.93, evenness index (J′) 0.22-0.60, and diversity index (H′) 0.79-2.18. The Macroalgal zonation of the subtidal zone was calculated by the Ecklonia cava and Brown algal population on five islands(Byeongpungdo, Yeoseodo, Geomundo, Beakdo, Hongdo). On the other hand, Undaria pinnatifida and Sargassum sp. dominated at Sejondo. Additionally, the biomass ratio and the species richness of green algae was lower in group A. These differences in the seaweed community structure may have resulted from the effects of turbidity and light transmittance.

An association between diet quality index for Koreans (DQI-K) and total mortality in Health Examinees Gem (HEXA-G) study

  • Lim, Jiyeon;Lee, Yunhee;Shin, Sangah;Lee, Hwi-Won;Kim, Claire E;Lee, Jong-koo;Lee, Sang-Ah;Kang, Daehee
    • Nutrition Research and Practice
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    • v.12 no.3
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    • pp.258-264
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    • 2018
  • BACKGROUND/OBJECTIVES: Diet quality scores or indices, based on dietary guidelines, are used to summarize dietary intake into a single numeric variable. The aim of this study was to examine the association between the modified diet quality index for Koreans (DQI-K) and mortality among Health Examinees-Gem (HEXA-G) study participants. SUBJECTS/METHODS: The DQI-K was modified from the original diet quality index. A total of 134,547 participants (45,207 men and 89,340 women) from the HEXA-G study (2004 and 2013) were included. The DQI-K is based on eight components: 1) daily protein intake, 2) percent of energy from fat, 3) percent of energy from saturated fat, 4) daily cholesterol intake, 5) daily whole-grain intake, 6) daily fruit intake, 7) daily vegetable intake, and 8) daily sodium intake. The association between all-cause mortality and the DQI-K was examined using Cox proportional hazard regression models. Hazard ratios and confidence intervals were estimated after adjusting for age, gender, income, smoking status, alcohol drinking, body mass index, and total energy intake. RESULTS: The total DQI-K score was calculated by summing the scores of the eight components (range 0-9). In the multivariable adjusted models, with good diet quality (score 0-4) as a reference, poor diet quality (score 5-9) was associated with an increased risk of all-cause mortality (hazard ratios = 1.23, 95% confidence intervals = 1.06-1.43). Moreover, a one-unit increase in DQI-K score resulted in a 6% higher mortality risk. CONCLUSIONS: A poor diet quality DQI-K score was associated with an increased risk of mortality. The DQI-K in the present study may be used to assess the diet quality of Korean adults.

Randomized Double-blind Human Trial to Evaluate Efficacy and Safety of Rhus verniciflua Stokes (Lacca Sinica Exsiccata) and Eucommia ulmoides Oliver (Eucommiae Cortex) Extract Combination (ILF-RE) on Improvement of Liver Function (옻나무-두충추출혼합물(ILF-RE)의 간기능 개선에 대한 유효성 및 안전성을 평가하기 위한 무작위배정 이중눈가림 인체적용시험)

  • Youn, Young;Baek, Hyang-Im;Jin, Hee-Yeon;Jeong, Da-Young;Shen, Lei;Joo, Jong-Cheon;Park, Soo-Jung
    • The Korea Journal of Herbology
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    • v.35 no.1
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    • pp.45-55
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    • 2020
  • Objectives : The purpose of this study is to determine whether Rhus verniciflua Stokes with Latin name Lacca Sinica Exsiccata, and Eucommia ulmoides Oliver with Latin name Eucommiae Cortex Extract Combination (ILF-RE) improves laboratory test results in participants with liver function disorder. Methods : This study was conducted at Woosuk university Korean medicine hospital where participants with high serum alanine transaminase (ALT) levels from 45 to 135 U/L were enrolled. Subjects received ILF-RE 3.6 g (1.2 g/day as ILF-RE) or placebo 3.6 g for 12 weeks. It was confirmed that urushiol was not detected in ILF-RE. The primary outcomes were the decrement degree of serum ALT and gamma-glutamyl transferase (GGT) levels between two groups. The secondary outcomes were the decrement degree of serum aspartate transaminase (AST), alkaline phosphatase (ALP), lactate dehydrogenase (LD), total bilirubin, total cholesterol, triglyceride (TG) and fatty liver index (FLI) levels between two groups. Adverse events, skin prick tests, laboratory tests, and vital signs were observed and analyzed to confirm the safety of ILF-RE.1) Results : In the ILF-RE group, the liver function index ALT, GGT, lipid metabolism index TG, and fatty liver index FLI were significantly decreased compared to the placebo group. There was no significant difference in ILF-RE group in terms of adverse events, severe adverse events, skin prick test, laboratory test, and vital signs compared with placebo group. Conclusions : ILF-RE was found to be effective in improving liver function. In addition, no clinically significant adverse events or body changes were observed during this study.

A Study on the Compatibilization of Blends Based on Poly(phenylene ether) and Polyamide (Poly(phenylene ether)/Polyamide 블렌드의 상용화에 관한 연구)

  • 김형수;임종철
    • Polymer(Korea)
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    • v.25 no.3
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    • pp.441-449
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    • 2001
  • Compatibilization of blends based on poly(phenylene ether) (PPE) and polyamide (PA) has been practiced with the incorporation of a copolymer formed by grafting polystyrene onto polybutadiene latex (g-BS) which is further functionalized with maleic anhydride (MAH) (g-BS*) to impart reactivity with amine groups of PA. The major focus has been placed on the effect of the various structural factors in g-BS8 on the phase morphology and mechanical performance of the blends. For the balance of impact strength and heat resistance, it was important to locate g-BS n particles inside of the PPE phase, which was accomplished by the proper control of the molecular weight and amount of PS in g-BS*. For g-BS*'s having constant molecular weight and amount of PS, the reduction of MAH content or increase of rubber particle size in g-BS* resulted in the increase of domain size and consequently loss in mechanical properties. Based on the comparison made with the conventional PPE/PA blend comprising MAH grafted PPE as a compatibilizer, it was confirmed that the comparable level of mechanical performance can be achieved by an appropriate g-BS* type material with improved whiteness index.

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Effects of Dietary Inclusion of Distillers Dried Grain as a Partial Replacement for Fish Meal on Growth Performance of Juvenile Rockfish Sebastes schlegeli (배합사료의 어분 대체원으로 막걸리부산물 첨가가 조피볼락 치어의 성장에 미치는 영향)

  • Bae, Ki-Min;Lee, Sang-Min
    • Journal of Fisheries and Marine Sciences Education
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    • v.27 no.2
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    • pp.390-398
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    • 2015
  • A feeding experiment was conducted to determine the use of distillers dried grain (DDG) as a partial replacement for fish meal in the diet for juvenile rockfish, Sebastes schlegeli. Four iso-nitrogenous (50% crude protein) and iso-caloric (4.3 kcal/g) diets (designated as DDG0, DDG7, DDG14, and DDG21) were formulated to contain 0, 7, 14, and 21% DDG. Triplicate groups of juvenile rockfish (initial body weight, $10.2{\pm}0.2g$) were fed one of the experimental diets to visual satiety twice a day (09:00 and 17:00) for 8 weeks. At the end of the feeding trial, survival of rockfish was above 97% and not affected by dietary DDG levels (P>0.05). Weight gain, feed efficiency and daily feed intake of juvenile rockfish were significantly decreased with increase of dietary DDG levels (P<0.05). Condition factor, hepatosomatic index and visceralsomatic index of juvenile rockfish were not significantly affected by dietary DDG levels (P>0.05). No significant differences were observed in the contents of moisture, crude protein, crude lipid and ash of the whole body and dorsal muscle in juvenile rockfish fed the experimental diets (P>0.05). Therefore dietary inclusion of DDG as a replacement for fish meal could depress the growth of juvenile rockfish.

Effects of extrusion cooking on physicochemical properties of white and red ginseng (powder)

  • Gui, Ying;Ryu, Gi-Hyung
    • Journal of Ginseng Research
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    • v.38 no.2
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    • pp.146-153
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    • 2014
  • A systematic comparison of the physicochemical properties of white ginseng (WG), extruded white ginseng (EWG), red ginseng (RG), and extruded red ginseng (ERG) was performed. The aim of the present study was to identify the effects of the physicochemical properties of ginseng by extrusion cooking. The highest value of the water absorption index (WAI) was 3.64 g/g obtained from EWG, and the highest value of the water solubility index (WSI) was 45.27% obtained from ERG. The ERG had a better dispersibility compared with other samples. Extrusion cooking led to a significant increase in acidic polysaccharide and total sugar content but resulted in a decrease in crude fat and reducing sugar contents. Enzyme treatment led to a sharp increase in acidic polysaccharide content, especially the cellulose enzyme. Extrusion cooking led to a significant increase in 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity and reducing power, and the increases in WG and RG were 13.56% (0.038) and 3.56% (0.026), respectively. The data of this study provide valuable information about the effects of extrusion on quality changes of EWG and ERG.