• Title/Summary/Keyword: Flexible dynamics

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A Novel Strategy for Thermostability Improvement of Trypsin Based on N-Glycosylation within the Ω-Loop Region

  • Guo, Chao;Liu, Ye;Yu, Haoran;Du, Kun;Gan, Yiru;Huang, He
    • Journal of Microbiology and Biotechnology
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    • v.26 no.7
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    • pp.1163-1172
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    • 2016
  • The Ω-loop is a nonregular and flexible structure that plays an important role in molecular recognition, protein folding, and thermostability. In the present study, molecular dynamics simulation was carried out to assess the molecular stability and flexibility profile of the porcine trypsin structures. Two Ω-Loops (fragment 57-67 and fragment 78-91) were confirmed to represent the flexible region. Subsequently, glycosylation site-directed mutations (A73S, N84S, and R104S) were introduced within the Ω-loop region and its wing chain based on its potential N-glycosylation sites (Asn-Xaa-Ser/Thr consensus sequences) and structure information to improve the thermostability of trypsin. The result demonstrated that the half-life of the N84S mutant at 50℃ increased by 177.89 min when compared with that of the wild-type enzyme. Furthermore, the significant increase in the thermal stability of the N84S mutant has also been proven by an increase in the Tm values determined by circular dichroism. Additionally, the optimum temperatures of the wild-type enzyme and the N84S mutant were 75℃ and 80℃, respectively. In conclusion, we obtained the thermostability-improved enzyme N84S mutant, and the strategy used to design this mutant based on its structural information and N-linked glycosylation modification could be applied to engineer other enzymes to meet the needs of the biotechnological industry.

Multi-flexible Dynamic Modeling and Wheel Load Analysis of a Rubber Tired Gantry Crane in Container Cargo Working (컨테이너 하역작업 시 갠트리 크레인의 유연다물체 동역학 모델링 및 윤하중 해석)

  • Kim, Jungyun;Kim, Jingon
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.27 no.5
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    • pp.379-384
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    • 2014
  • This article describes the dynamic behaviors of a rubber tired gantry crane(RTGC) under typical load conditions which are used in the design of gantry cranes. In order to investigate the dynamic characteristics of an RTGC, we developed a finite element crane model for its huge structure. The finite element model was validated with the modal test results, e.g., natural frequencies and normal modes. And other components of RTGC were converted into detailed 3D CAD models and finally transformed to rigid body models in a dynamic simulation program ADAMS. The load conditions considered in this paper were a normal operating condition(OP1) and container hanging condition with no external loads. As a result, we could find there was large influence of crane's vibration owing to its structural stiffness and deformation. And the vibration of crane could made the movements of RTGC, which occurs crash or malfunction of crane works.

A Numerical Study on the Effect of a Microfin with a Flexible Up-down Movement on Heat Transfer using a Fluid-structure Interaction (FSI) Method (양방향 유체-고체 연성해석을 통한 표면 위 미세날개의 진동이 열전달에 미치는 영향 분석)

  • Park, Ki-Hong;Min, June-Kee;Kim, Jin-Kyu;Kang, Seok-Hoon;Kim, Seong-Jin;Park, Sang-Hu
    • Journal of the Korean Society for Precision Engineering
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    • v.28 no.8
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    • pp.975-983
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    • 2011
  • A microfin on a heated surface and its effects of the heat transfer has been investigated. The thickness of the fin is about 8 micrometer to allow the flexible up-down motion of the fin. Two-way complete FSI (Fluid-Structure Interaction) method has been applied for the analysis. Firstly, the deformation of a microfin due to the pulsating flow is evaluated using structure analysis. The flow and temperature patterns are predicted by CFD (Computational Fluid Dynamics) method. At each time step, using the pressure force and temperature distribution from CFD, the deformation of the wing is evaluated by FEM. Also in order to estimate the resonance probability, the natural frequency of the wing structure is calculated by modal analysis. The proposed numerical procedure was validated through experiment using a single fin. Through this work, we show that the increase of 40% in heat transfer capacity using the microfin has been compared with that of flat plate case.

Numerical Analysis for Nonlinear Static and Dynamic Responses of Floating Crane with Elastic Boom (붐(Boom)의 탄성을 고려한 해상크레인의 비선형 정적/동적 거동을 위한 수치 해석)

  • Cha, Ju-Hwan;Park, Kwang-Phil;Lee, Kyu-Yeul
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.34 no.4
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    • pp.501-509
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    • 2010
  • A floating crane is a crane-mounted ship and is used to assemble or to transport heavy blocks in shipyards. In this paper, the static and dynamic response of a floating crane and a heavy block that are connected using elastic booms and wire ropes are described. The static and dynamic equations of surge, pitch, and heave for the system are derived on the basis of flexible multibody system dynamics. The equations of motion are fully coupled and highly nonlinear since they involve nonlinear mass matrices, elastic stiffness matrices, quadratic velocity vectors, and generalized external forces. A floating frame of reference and nodal coordinates are employed to model the boom as a flexible body. The nonlinear hydrostatic force, linear hydrodynamic force, wire-rope force, and mooring force are considered as the external forces. For numerical analysis, the Hilber-Hughes-Taylor method for implicit integration is used. The dynamic responses of the cargo are analyzed with respect to the results obtained by static and numerical analyses.

Arrangement Plan of Buoyancy Modules for the Stable Operation of the Flexible Riser in a Deep-Seabed Mining System (심해저 채광 시스템에서 유연관의 안정적인 운용을 위한 부력재 배치 설계)

  • Oh, Jae-Won;Min, Cheon-Hong;Lee, Chang-Ho;Hong, Sup;Bae, Dae-Sung;Lim, Jun-Hyun;Kim, Hyung-Woo
    • Ocean and Polar Research
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    • v.37 no.2
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    • pp.119-125
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    • 2015
  • This paper focuses on the efficient arrangement plan of buoyancy modules, which plan is used to secure the safe operation and structural stability of a marine riser. The marine riser is connected between a vessel and seabed devices. The movement of the vessel and the seabed devices are affected by the motion of the riser. The riser of a deep-seabed integrated mining system exerts a strong influence on the healthy transfer of minerals. So, buoyancy modules must be equipped to compensate for the problem which is the structure stability and the dynamic motion. Installation locations and quantities of the buoyancy modules are determined by real sea experiments. But this is not easy to do because in real sea experimental conditions the cost is expensive as well as being, time-consuming and dangerous. Therefore, the locations and quantities should be determined by numerical simulation. This method is called simulation-based design. The dynamic analysis models of the riser and the buoyancy modules are built into the commercial software of DAFUL.

Development of Analytical Model of Spindle and Rack Gear Systems for Knuckle Boom Crane (굴절식 크레인의 스핀들과 랙 기어 응력 해석 모델 개발)

  • An, Junwook;Lee, Kwang Hee;Gyu, Yusung;Jo, Je Sang;Lee, Chul Hee
    • Journal of Drive and Control
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    • v.14 no.2
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    • pp.23-29
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    • 2017
  • In this study, a flexible multi-body dynamic simulation model of a knuckle boom crane is developed to evaluate the stress of spindle and rack gears under dynamic working conditions. It is difficult to predict potential critical damage to a knuckle boom crane if only the static condition is considered during the development process. To solve this issue, a severe working scenario (high speed with heavy load) was simulated as a boundary condition for testing the integrity of the dynamic simulation model. The crane gear model is defined as a flexible body so contact analysis was performed. The functional motion of a knuckle boom crane is generated by applying forces at each end of the rack gear, which was converted from hydraulic pressure measured for the experiment. The bending and contact stress of gears are theoretically calculated to validate the simulation model. In the simulation, the maximum stress of spindle and rack gears are observed when the crane abruptly stops. Peak impact force is produced at the contact interface between pinion and rack gears due to the inertia force of the boom. However, the maximum stress (bending/contact) of spindle and rack are under the yield stress, which is safe from damage. By using the developed simulation model, the experiment process is expected to be minimized.

Levitation Control Simulation of a Maglev Vehicle Considering Guideway Flexibility (가이드웨이 유연성이 고려된 자기부상열차 부상제어 시뮬레이션)

  • Han, Jong-Boo;Lim, Jaewon;Kim, Chang-Hyun;Han, Hyung-Suk;Kim, Sung-Soo
    • Journal of the Korean Society for Railway
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    • v.18 no.1
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    • pp.15-24
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    • 2015
  • In magnetic levitation vehicles, the clearance between the magnet and track should be maintained within an allowable range through a feedback control loop. The flexibility of the guideway would introduce additional modes in the overall suspension system, resulting in dynamic interaction between the guideway vibration and the electromagnetic suspension control system. This dynamic interaction can be a serious problem, particularly at very low speeds or standstill, and may cause airgap instability. To optimize the overall system dynamics, an integrated dynamic model including mechanical and electrical parts and a flexible guideway as well as a control loop was developed. With the proposed model, airgap simulations at standstill were performed while varying the control gains, specifically with the aim of understanding the effects of gains of the PID controller on the airgap variation. The findings may be used to achieve a stable levitation controller design.

Design Optimization and Endurance Assessment of Weld Area for LCD Robot Frame (LCD 로봇 주요 프레임에 대한 설계 최적화 및 용접부 수명평가)

  • Han, Sung Wook;Kang, Yun Sik;Kim, Teahyun;Kim, Sang Hyun
    • Transactions of the KSME C: Technology and Education
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    • v.5 no.2
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    • pp.89-95
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    • 2017
  • LCD robot vertical frame lets a arm assembly with glass substrate move up and down, so it must have high stiffness and strength. We applied new manufacturing process by using design optimization process such as topology and size optimization in order to satisfy the request of high stiffness and light weight. The proposed model should be evaluated for endurance strength. Therefore fatigue assessment for weak point of aluminum welding area of vertical frame studied with hot spot stress approach. And the actual stress measuring from test was compared and evaluated with the dynamic stress calculated from multi-body dynamics considering flexible body.

Static and dynamic characterization of a flexible scaled joined-wing flight test demonstrator

  • Carregado, Jose;Warwick, Stephen;Richards, Jenner;Engelsen, Frode;Suleman, Afzal
    • Advances in aircraft and spacecraft science
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    • v.6 no.2
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    • pp.117-144
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    • 2019
  • High Altitude and Long Endurance (HALE) aircraft are capable of providing intelligence, surveillance and reconnaissance (ISR) capabilities over vast geographic areas when equipped with advanced sensor packages. As their use becomes more widespread, the demand for additional range, endurance and payload capability will increase and designers are exploring non-conventional configurations to meet the increasing demands. One such configuration is the joined-wing concept. A joined-wing aircraft is one that typically connects a front and aft wings in a diamond shaped planform. One such example is the Boeing SensorCraft configuration. While the joined-wing configuration offers potential benefits regarding aerodynamic efficiency, structural weight, and sensing capabilities, structural design requires careful consideration of elastic buckling resulting from the aft wing supporting, in compression, part of the forward wing structural loading. It has been shown already that this is a nonlinear phenomenon, involving geometric nonlinearities and follower forces that tend to flatten the entire configuration, leading to structural overload due to the loss of the aft wing's ability to support the forward wing load. Severe gusts are likely to be the critical design condition, with flight control system interaction in the form of Gust Load Alleviation (GLA) playing a key role in minimizing the structural loads. The University of Victoria Center for Aerospace Research (UVic-CfAR) has built a 3-meter span scaled and flexible wing UAV based on the Boeing SensorCraft design. The goal is to validate the nonlinear structural behavior in flight. The main objective of this research work is to perform Ground Vibration Tests (GVT) to characterize the dynamic properties of the scaled flight vehicle. Results from the experimental tests are used to characterize the modal dynamics of the aircraft, and to validate the numerical models. The GVT results are an important step towards a safe flight test program.

Aerodynamic and Aeroelastic Tool for Wind Turbine Applications

  • Viti, Valerio;Coppotelli, Giuliano;De Pompeis, Federico;Marzocca, Pier
    • International Journal of Aeronautical and Space Sciences
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    • v.14 no.1
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    • pp.30-45
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    • 2013
  • The present work focuses on the unsteady aerodynamics and aeroelastic properties of a small-medium sized wind-turbine blade operating under ideal conditions. A tapered/twisted blade representative of commercial blades used in an experiment setup at the National Renewable Energy Laboratory is considered. The aerodynamic loads are computed using Computational Fluid Dynamics (CFD) techniques. For this purpose, FLUENT$^{(R)}$, a commercial finite-volume code that solves the Navier-Stokes and the Reynolds-Averaged Navier-Stokes (RANS) equations, is used. Turbulence effects in the 2D simulations are modeled using the Wilcox k-w model for validation of the CFD approach. For the 3D aerodynamic simulations, in a first approximation, and considering that the intent is to present a methodology and workflow philosophy more than highly accurate turbulent simulations, the unsteady laminar Navier-Stokes equations were used to determine the unsteady loads acting on the blades. Five different blade pitch angles were considered and their aerodynamic performance compared. The structural dynamics of the flexible wind-turbine blade undergoing significant elastic displacements has been described by a nonlinear flap-lag-torsion slender-beam differential model. The aerodynamic quasi-steady forcing terms needed for the aeroelastic governing equations have been predicted through a strip-theory based on a simple 2D model, and the pertinent aerodynamic coefficients and the distribution over the blade span of the induced velocity derived using CFD. The resulting unsteady hub loads are achieved by a first space integration of the aeroelastic equations by applying the Galerkin's approach and by a time integration using a harmonic balance scheme. Comparison among two- and three- dimensional computations for the unsteady aerodynamic load, the flap, lag and torsional deflections, forces and moments are presented in the paper. Results, discussions and pertinent conclusions are outlined.