• Title/Summary/Keyword: Domain combination

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Cloning and Expression of a Yeast Cell Wall Hydrolase Gene (ycl) from Alkalophilic Bacillus alcalophilus subsp. YB380

  • Ohk, Seung-Ho;Yeo, Ik-Hyun;Yu, Yun-Jung;Kim, Byong-Ki;Bai, Dong-Hoon
    • Journal of Microbiology and Biotechnology
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    • v.11 no.3
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    • pp.508-514
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    • 2001
  • A stuructural gene (ycl) encoding novel yeast cell wall hydrolase, YCL, was cloned from alkalophilic Bacillus alcalophilus subsp. YB380 by PCR, and transformed into E. coli JM83. Based on the N-terminal and internal amino acid sequences of the enzyme, primers were designed for PCr. The positive clone that harbors 1.8 kb of the yeast cell wall hydrolase gene was selected by the colony hybridization method with a PCR fragment as a probe. According to the computer analysis, this gene contained a 400-base-paired N-terminal domain of the enzyme. Based on nucletide homology of the cloned gene, a 850 bp fragment was amplified and the C-terminal domain of the enzyme was sequenced. With a combination of the two sequences, a full nucleotide sequence for YCL was obtained. This gene, ycl, consisted of 1,297 nucleotides with 27 nucleotides with 27 amino acids of signal sequence, 83 redundant amino acids of prosequence, and 265 amino acids of the mature protein. This gene was then cloned into the pJH27 shuttle vector and transformed into the Bacillus subtilis DB104 to express the enzyme. It was confirmed that the expressed cell wall hydrolase that was produced by Bacillus subtilis DB104 was the same as that of the donor strain, by Western blot using polyclonal antibody (IgY) prepared from White Leghorn hen. Purified yeast cell wall hydrolase and expressed recombinant protein showed a single band at the same position in the Western blot analysis.

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Development of a Fatigue Damage Model of Wideband Process using an Artificial Neural Network (인공 신경망을 이용한 광대역 과정의 피로 손상 모델 개발)

  • Kim, Hosoung;Ahn, In-Gyu;Kim, Yooil
    • Journal of the Society of Naval Architects of Korea
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    • v.52 no.1
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    • pp.88-95
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    • 2015
  • For the frequency-domain spectral fatigue analysis, the probability density function of stress range needs to be estimated based on the stress spectrum only, which is a frequency domain representation of the response. The probability distribution of the stress range of the narrow-band spectrum is known to follow the Rayleigh distribution, however the PDF of wide-band spectrum is difficult to define with clarity due to the complicated fluctuation pattern of spectrum. In this paper, efforts have been made to figure out the links between the probability density function of stress range to the structural response of wide-band Gaussian random process. An artificial neural network scheme, known as one of the most powerful system identification methods, was used to identify the multivariate functional relationship between the idealized wide-band spectrums and resulting probability density functions. To achieve this, the spectrums were idealized as a superposition of two triangles with arbitrary location, height and width, targeting to comprise wide-band spectrum, and the probability density functions were represented by the linear combination of equally spaced Gaussian basis functions. To train the network under supervision, varieties of different wide-band spectrums were assumed and the converged probability density function of the stress range was derived using the rainflow counting method and all these data sets were fed into the three layer perceptron model. This nonlinear least square problem was solved using Levenberg-Marquardt algorithm with regularization term included. It was proven that the network trained using the given data set could reproduce the probability density function of arbitrary wide-band spectrum of two triangles with great success.

Study on the Structural System Condensation Using Multi-level Sub-structuring Scheme in Large-scale Problems (대형 시스템에서의 다단계 부분구조 기법을 이용한 시스템 축소기법에 관한 연구)

  • Baek, Sung-Min;Cho, Maeng-Hyo;Kim, Hyun-Gi
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.21 no.3
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    • pp.281-285
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    • 2008
  • Eigenvalue reduction schemes approximate the lower eigenmodes that represent the global behavior of the structures. In the previous study, we proposed a two-level condensation scheme (TLCS) for the construction of a reduced system. And we have improved previous TLCS with combination of the iterated improved reduced system method (IIRS) to increase accuracy of the higher modes intermediate range. In this study, we apply previous improved TLCS to multi-level sub-structuring scheme. In the first step, the global system is recursively partitioned into a hierarchy of sub-domain. In second step, each uncoupled sub-domain is condensed by the improved TLCS. After assembly process of each reduced sub-eigenvalue problem, eigen-solution is calculated by Lanczos method (ARPACK). Finally, Numerical examples demonstrate performance of proposed method.

A MOM-based algorithm for moving force identification: Part I - Theory and numerical simulation

  • Yu, Ling;Chan, Tommy H.T.;Zhu, Jun-Hua
    • Structural Engineering and Mechanics
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    • v.29 no.2
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    • pp.135-154
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    • 2008
  • The moving vehicle loads on a bridge deck is one of the most important live loads of bridges. They should be understood, monitored and controlled before the bridge design as well as when the bridge is open for traffic. A MOM-based algorithm (MOMA) is proposed for identifying the timevarying moving vehicle loads from the responses of bridge deck in this paper. It aims at an acceptable solution to the ill-conditioning problem that often exists in the inverse problem of moving force identification. The moving vehicle loads are described as a combination of whole basis functions, such as orthogonal Legendre polynomials or Fourier series, and further estimated by solving the new system equations developed with the basis functions. A number of responses have been combined, some numerical simulations on single axle, two axle and multiple-axle loads, being either constant or timevarying, have been carried out and compared with the existing time domain method (TDM) in this paper. The illustrated results show that the MOMA has higher identification accuracy and robust noise immunity as well as producing an acceptable solution to ill-conditioning cases to some extent when it is used to identify the moving force from bridge responses.

A study on the development of integrated class data using the mathematical linkage found in the study of Mendel (1865) ('Mendel(1865)의 연구에서 발견한 수학적 연결고리'를 이용한 통합 수업 자료 개발에 관한 연구)

  • Lee, Dong Gun
    • The Mathematical Education
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    • v.58 no.3
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    • pp.383-401
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    • 2019
  • This study started with the idea that it is necessary to focus on common concepts and ideas among the subjects when conducting integrated education in high school. This is a preliminary study for developing materials that can be taught in mathematics in the context of already learning scientific concepts in high school. For this purpose, Mendel 's law of genetics was studied among the contents of biological subjects which are known to have relatively little connection with mathematics. The more common links between the two subjects are, the better, in order to integrate math and other subjects and develop materials for teaching. Therefore, in this study, we investigated not only the probability domain but also the concept of statistical domain. We have been wondering if there is a more abundant idea to connect between 'Mendel's law' and 'probability and statistics'. Through these anxieties, we could find that concepts such as 'likely equality' and 'permutation and combination' including 'a large number of laws' can be a link between two subjects. Based on this, we were able to develop class materials that correspond to classes. This study is expected to help with research related to development of integrated education support materials, focusing on mathematics.

Double Duobinary MSK Modeling of the SOQPSK-TG Signal (SOQPSK-TG 신호의 이중 듀오바이너리 MSK 모델링)

  • Kim, KyunHoi;Eun, Changsoo
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.49 no.11
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    • pp.945-951
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    • 2021
  • The SOQPSK-TG is a modulated signal for aeronautical telemetry with a very good bandwidth efficiency. In this paper, the frequency waveform filter of the SOQPSK-TG is linearly approximated and modeled with a duobinary precoder and a modified frequency waveform filter having a phase transition period of about 1Tb. In combination with the existing precoder, the SOQPSK-TG is modeled by a double duobinary MSK. Comparing the SOQPSK-TG signal and the newly modeled double duobinary MSK signal in time domain and frequency domain, it is confirmed that the two signals are almost identical and there is virtually no performance difference. Moreover, we can attain 0.1 dB BER performance improvement compared to the existing cosine filter when the filter of the IQ-detector is implemented with a cosine sum filter taking into account the change in the modulation index by the new double doubinary precoder.

A Corpus-based English Syntax Academic Word List Building and its Lexical Profile Analysis (코퍼스 기반 영어 통사론 학술 어휘목록 구축 및 어휘 분포 분석)

  • Lee, Hye-Jin;Lee, Je-Young
    • The Journal of the Korea Contents Association
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    • v.21 no.12
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    • pp.132-139
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    • 2021
  • This corpus-driven research expounded the compilation of the most frequently occurring academic words in the domain of syntax and compared the extracted wordlist with Academic Word List(AWL) of Coxhead(2000) and General Service List(GSL) of West(1953) to examine their distribution and coverage within the syntax corpus. A specialized 546,074 token corpus, composed of widely used must-read syntax textbooks for English education majors, was loaded into and analyzed with AntWordProfiler 1.4.1. Under the parameter of lexical frequency, the analysis identified 288(50.5%) AWL word forms, appeared 16 times or more, as well as 218(38.2%) AWL items, occurred not exceeding 15 times. The analysis also indicated that the coverage of AWL and GSL accounted for 9.19% and 78.92% respectively and the combination of GSL and AWL amounted to 88.11% of all tokens. Given that AWL can be instrumental in serving broad disciplinary needs, this study highlighted the necessity to compile the domain-specific AWL as a lexical repertoire to promote academic literacy and competence.

Sp1-Induced SETDB1 Overexpression Transcriptionally Inhibits HPGD in a β-Catenin-Dependent Manner and Promotes the Proliferation and Metastasis of Gastric Cancer

  • Fan, Yaguan;Yang, Libo;Ren, Yi;Wu, Yunhua;Li, Linhai;Li, Lihua
    • Journal of Gastric Cancer
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    • v.22 no.4
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    • pp.319-338
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    • 2022
  • Purpose: Gastric cancer (GC) has high morbidity and mortality, the cure rate of surgical treatment and drug chemotherapy is not ideal. Therefore, development of new treatment strategies is necessary. We aimed to identify the mechanism underlying Sp1 regulation of GC progression. Methods and Methods: The levels of Sp1, β-catenin, SET domain bifurcated 1 (SETDB1), and 15-hydroxyprostaglandin dehydrogenase (HPGD) were detected by quantitative reverse transcription polymerase chain reaction and western blot analysis. The targets of SETDB1 were predicted by AnimalTFDB, and dual-luciferase reporter assay was used for confirming the combination of Sp1, β-catenin, and SETDB1. HGC27 or AGS cells (1×106 cells/mouse) were injected into mice via the caudal vein for GC model establishment. The level of Ki67 was detected using immunohistochemistry, and hematoxylin and eosin staining was performed for evaluating tumor metastasis in mice with GC. Results: HPGD was inhibited, while the protein levels of Sp1, β-catenin, and SETDB1 were up-regulated in GC tissues and cell lines. HPGD overexpression or SETDB1 silencing inhibited the proliferation, invasion, and migration of GC cells, and Sp1 regulated the proliferation, invasion, and migration of GC cells in a β-catenin-dependent manner. Furthermore, HPGD served as a target of SETDB1, and it was negatively regulated by SETDB1; additionally, Sp1 and β-catenin bound to the SETDB1 promoter and negatively regulated HPGD expression. We proved that Sp1 regulated GC progression via the SETDB1/HPGD axis. Conclusions: Our findings revealed that Sp1 transcriptionally inhibited HPGD via SETDB1 in a β-catenin-dependent manner and promoted the proliferation and metastasis of GC cells.

Methodology for Deriving Required Quality of Product Using Analysis of Customer Reviews (사용자 리뷰 분석을 통한 제품 요구품질 도출 방법론)

  • Yerin Yu;Jeongeun Byun;Kuk Jin Bae;Sumin Seo;Younha Kim;Namgyu Kim
    • Journal of Information Technology Applications and Management
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    • v.30 no.2
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    • pp.1-18
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    • 2023
  • Recently, as technology development has accelerated and product life cycles have been shortened, it is necessary to derive key product features from customers in the R&D planning and evaluation stage. More companies want differentiated competitiveness by providing consumer-tailored products based on big data and artificial intelligence technology. To achieve this, the need to correctly grasp the required quality, which is a requirement of consumers, is increasing. However, the existing methods are centered on suppliers or domain experts, so there is a gap from the actual perspective of consumers. In other words, product attributes were defined by suppliers or field experts, but this may not consider consumers' actual perspective. Accordingly, the demand for deriving the product's main attributes through reviews containing consumers' perspectives has recently increased. Therefore, we propose a review data analysis-based required quality methodology containing customer requirements. Specifically, a pre-training language model with a good understanding of Korean reviews was established, consumer intent was correctly identified, and key contents were extracted from the review through a combination of KeyBERT and topic modeling to derive the required quality for each product. RevBERT, a Korean review domain-specific pre-training language model, was established through further pre-training. By comparing the existing pre-training language model KcBERT, we confirmed that RevBERT had a deeper understanding of customer reviews. In addition, all processes other than that of selecting the required quality were linked to the automation process, resulting in the automation of deriving the required quality based on data.

Fatigue Life Optimization of Spot Welding Nuggets Considering Vibration Mode of Vehicle Subframe (서브프레임의 진동모드를 고려한 점용접 너깃의 피로수명 최적설계)

  • Lee, Sang-Beom;Lee, Hyuk-Jae
    • The Journal of the Acoustical Society of Korea
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    • v.28 no.7
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    • pp.646-652
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    • 2009
  • In this paper, welding pitch optimization technique of vehicle subframe is presented considering the fatigue life of spot welding nuggets. Fatigue life of spot welding nuggets is estimated by using the frequency-domain fatigue analysis technique. The input data, which are used in the fatigue analysis, are obtained by performing the dynamic analysis of vehicle model passing through the Belgian road profile and also the modal frequency response analysis of finite element model of vehicle subframe. According to the fatigue life result obtained from the frequency-domain fatigue analysis, the design points to optimize the weld pitch distance are determined. For obtaining the welding pitch combination to maximize the fatigue life of the spot welding nuggets, 4-factor, 3-level orthogonal array experimental design is used. This study shows that the optimized subframe improves the fatigue life of welding nugget with minimum fatigue life about 65.8 % as compared with the baseline design.